Works matching DE "FUNGAL genomes"

Results: 380

The trends in the spread of simple sequence repeats in the genomes of Schizophyllum commune.

Published in:

Mycologia, 2023, v. 115, n. 3, p. 288, doi. 10.1080/00275514.2023.2186742

By:

Boiko, Sergiy M.

Publication type:

Article

Genetic differentiation and phylogenetic potential of Ty3/Gypsy LTR retrotransposon markers in soil and plant pathogenic fungi.

Published in:

Journal of Basic Microbiology, 2020, v. 60, n. 6, p. 508, doi. 10.1002/jobm.201900487

By:

Chadha, Sonia;
Sharma, Mradul

Publication type:

Article

Scytalidium candidum 3C is a new name for the Geotrichum candidum Link 3C strain.

Published in:

Journal of Basic Microbiology, 2018, v. 58, n. 10, p. 883, doi. 10.1002/jobm.201800066

By:

Pavlov, Ivan Yu.;
Bobrov, Kirill S.;
Sumacheva, Anastasiya D.;
Masharsky, Alexey E.;
Polev, Dmitrii E.;
Zhurishkina, Elena V.;
Kulminskaya, Anna A.

Publication type:

Article

Coconut oil induced production of a surfactant-compatible lipase from Aspergillus tamarii under submerged fermentation.

Published in:

Journal of Basic Microbiology, 2017, v. 57, n. 2, p. 114, doi. 10.1002/jobm.201600478

By:

Das, Arijit;
Bhattacharya, Sourav;
Shivakumar, Srividya;
Shakya, Sujina;
Sogane, Swathi Shankar

Publication type:

Article

Metabolomic Analysis of The Chemical Diversity of South Africa Leaf Litter Fungal Species Using an Epigenetic Culture-Based Approach.

Published in:

Molecules, 2021, v. 26, n. 14, p. 4262, doi. 10.3390/molecules26144262

By:

Serrano, Rachel;
González-Menéndez, Víctor;
Martínez, Germán;
Toro, Clara;
Martín, Jesús;
Genilloud, Olga;
Tormo, José R.

Publication type:

Article

Discovery of New Secondary Metabolites by Epigenetic Regulation and NMR Comparison from the Plant Endophytic Fungus Monosporascus eutypoides.

Published in:

Molecules, 2020, v. 25, n. 18, p. 4192, doi. 10.3390/molecules25184192

By:

Guo, Zhe;
Zou, Zhong-Mei

Publication type:

Article

Linking Genes to Molecules in Eukaryotic Sources: An Endeavor to Expand Our Biosynthetic Repertoire.

Published in:

Molecules, 2020, v. 25, n. 3, p. 625, doi. 10.3390/molecules25030625

By:

Ganley, Jack G.;
Derbyshire, Emily R.

Publication type:

Article

Improving candidate Biosynthetic Gene Clusters in fungi through reinforcement learning.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3984, doi. 10.1093/bioinformatics/btac420

By:

Almeida, Hayda;
Tsang, Adrian;
Diallo, Abdoulaye Baniré

Publication type:

Article

FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2936, doi. 10.1093/bioinformatics/btx353

By:

Byoungnam Min;
Grigoriev, Igor V.;
In-Geol Choi

Publication type:

Article

Filling annotation gaps in yeast genomes using genome-wide contact maps.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2105, doi. 10.1093/bioinformatics/btu162

By:

Marie-Nelly, Hervé;
Marbouty, Martial;
Cournac, Axel;
Liti, Gianni;
Fischer, Gilles;
Zimmer, Christophe;
Koszul, Romain

Publication type:

Article

De novo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads.

Published in:

Bioinformatics, 2014, v. 30, n. 1, p. 40, doi. 10.1093/bioinformatics/btt590

By:

Hernandez, David;
Tewhey, Ryan;
Veyrieras, Jean-Baptiste;
Farinelli, Laurent;
Østerås, Magne;
François, Patrice;
Schrenzel, Jacques

Publication type:

Article

TRFolder-W: a web server for telomerase RNA structure prediction in yeast genomes.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2696, doi. 10.1093/bioinformatics/bts506

By:

Zhang, Dong;
Xue, Xingran;
Malmberg, Russell L.;
Cai, Liming

Publication type:

Article

Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06681-w

By:

Steindorff, Andrei S.;
Aguilar-Pontes, Maria Victoria;
Robinson, Aaron J.;
Andreopoulos, Bill;
LaButti, Kurt;
Kuo, Alan;
Mondo, Stephen;
Riley, Robert;
Otillar, Robert;
Haridas, Sajeet;
Lipzen, Anna;
Grimwood, Jane;
Schmutz, Jeremy;
Clum, Alicia;
Reid, Ian D.;
Moisan, Marie-Claude;
Butler, Gregory;
Nguyen, Thi Truc Minh;
Dewar, Ken;
Conant, Gavin

Publication type:

Article

Predicting Lifestyle from Positive Selection Data and Genome Properties in Oomycetes.

Published in:

Pathogens, 2021, v. 10, n. 7, p. 807, doi. 10.3390/pathogens10070807

By:

Gómez-Pérez, Daniel;
Kemen, Eric

Publication type:

Article

High-Resolution Core Gene-Associated Multiple Nucleotide Polymorphism (cgMNP) Markers for Strain Identification in the Wine Cap Mushroom Stropharia rugosoannulata.

Published in:

Microorganisms, 2025, v. 13, n. 7, p. 1685, doi. 10.3390/microorganisms13071685

By:

Liu, Fei;
Cao, Bin;
Dai, Hongmei;
Li, Guojie;
Li, Shoumian;
Gao, Wei;
Zhao, Ruilin

Publication type:

Article

Systematic analyses reveal uniqueness and origin of the CFEM domain in fungi.

Published in:

Scientific Reports, 2015, p. 13032, doi. 10.1038/srep13032

By:

Zhang, Zhen-Na;
Wu, Qin-Yi;
Zhang, Gui-Zhi;
Zhu, Yue-Yan;
Murphy, Robert W.;
Liu, Zhen;
Zou, Cheng-Gang

Publication type:

Article

Shed Light in the DaRk LineagES of the Fungal Tree of Life—STRES.

Published in:

Life (2075-1729), 2020, v. 10, n. 12, p. 362, doi. 10.3390/life10120362

By:

Selbmann, Laura;
Benkő, Zsigmond;
Coleine, Claudia;
de Hoog, Sybren;
Donati, Claudio;
Druzhinina, Irina;
Emri, Tamás;
Ettinger, Cassie L.;
Gladfelter, Amy S.;
Gorbushina, Anna A.;
Grigoriev, Igor V.;
Grube, Martin;
Gunde-Cimerman, Nina;
Karányi, Zsolt Ákos;
Kocsis, Beatrix;
Kubressoian, Tania;
Miklós, Ida;
Miskei, Márton;
Muggia, Lucia;
Northen, Trent

Publication type:

Article

Discovering the hidden function in fungal genomes.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52568-z

By:

Gervais, Nicholas C.;
Shapiro, Rebecca S.

Publication type:

Article

Discovery of fungal onoceroid triterpenoids through domainless enzyme-targeted global genome mining.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48771-7

By:

Tang, Jia;
Matsuda, Yudai

Publication type:

Article

DNA isolation from Aspergillus flavus: Optimal method selection.

Published in:

Croatian Journal of Food Science & Technology, 2018, v. 10, n. 2, p. 157, doi. 10.17508/CJFST.2018.10.2.02

By:

ŠARKANJ, BOJAN;
BOŠNJAK, ZINKA;
PERIĆ, MAGDALENA;
KOVAČ, TIHOMIR;
DŽIJAN, SNJEŽANA

Publication type:

Article

Phylogenetic analysis of the Tc1/mariner superfamily reveals the unexplored diversity of pogo-like elements.

Published in:

Mobile DNA, 2020, v. 11, n. 1, p. 1, doi. 10.1186/s13100-020-00212-0

By:

Dupeyron, Mathilde;
Baril, Tobias;
Bass, Chris;
Hayward, Alexander

Publication type:

Article

Variable genome evolution in fungi after transposon-mediated amplification of a housekeeping gene.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0177-0

By:

Dhillon, Braham;
Kema, Gert H. J.;
Hamelin, Richard C.;
Bluhm, Burt H.;
Goodwin, Stephen B.

Publication type:

Article

Intraspecific Variation of Transposable Elements Reveals Differences in the Evolutionary History of Fungal Phytopathogen Pathotypes.

Published in:

Genome Biology & Evolution, 2023, v. 15, n. 12, p. 1, doi. 10.1093/gbe/evad206

By:

Nakamoto, Anne A;
Joubert, Pierre M;
Krasileva, Ksenia V

Publication type:

Article

Positive Selection of Transcription Factors Is a Prominent Feature of the Evolution of a Plant Pathogenic Genus Originating in the Miocene.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 8, p. 1, doi. 10.1093/gbe/evab167

By:

Derbyshire, Mark C;
Harper, Lincoln A;
Lopez-Ruiz, Francisco J

Publication type:

Article

Dynamics in Secondary Metabolite Gene Clusters in Otherwise Highly Syntenic and Stable Genomes in the Fungal Genus Botrytis.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 12, p. 2491, doi. 10.1093/gbe/evaa218

By:

Valero-Jiménez, Claudio A;
Steentjes, Maikel B F;
Slot, Jason C;
Shi-Kunne, Xiaoqian;
Scholten, Olga E;
Kan, Jan A L van

Publication type:

Article

Origin and Evolution of Fusidane-Type Antibiotics Biosynthetic Pathway through Multiple Horizontal Gene Transfers.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 10, p. 1830, doi. 10.1093/gbe/evaa163

By:

Li, Xiangchen;
Cheng, Jian;
Liu, Xiaonan;
Guo, Xiaoxian;
Liu, Yuqian;
Fan, Wenjing;
Lu, Lina;
Ma, Yanhe;
Liu, Tao;
Tao, Shiheng;
Jiang, Huifeng

Publication type:

Article

Complex Evolutionary Origins of Specialized Metabolite Gene Cluster Diversity among the Plant Pathogenic Fungi of the Fusarium graminearum Species Complex.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 11, p. 3106, doi. 10.1093/gbe/evz225

By:

Tralamazza, Sabina Moser;
Rocha, Liliana Oliveira;
Oggenfuss, Ursula;
Corrêa, Benedito;
Croll, Daniel

Publication type:

Article

Evidence of Extensive Intraspecific Noncoding Reshuffling in a 169-kb Mitochondrial Genome of a Basidiomycetous Fungus.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 10, p. 2774, doi. 10.1093/gbe/evz181

By:

Lee, Hsin-Han;
Ke, Huei-Mien;
Lin, Chan-Yi Ivy;
Lee, Tracy J;
Chung, Chia-Lin;
Tsai, Isheng J

Publication type:

Article

Positively Selected Effector Genes and Their Contribution to Virulence in the Smut Fungus Sporisorium reilianum.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 2, p. 629, doi. 10.1093/gbe/evy023

By:

Schweizer, Gabriel;
Münch, Karin;
Mannhaupt, Gertrud;
Schirawski, Jan;
Kahmann, Regine;
Dutheil, Julien Y.

Publication type:

Article

Whole-Genome Sequencing and In Silico Analysis of Two Strains of Sporothrix globosa.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 11, p. 1, doi. 10.1093/gbe/evw230

By:

Lilin Huang;
Wenchao Gao;
Giosa, Domenico;
Giuseppe Criseo;
Jing Zhang;
Tailong He;
Xiaowen Huang;
Jiufeng Sun;
Yao Sun;
Jiamin Huang;
Yunqing Zhang;
Brankovics, Balazs;
Scordino, Fabio;
D'Alessandro, Enrico;
van Diepeningen, Anne;
de Hoog, Sybren;
Huaiqiu Huang;
Romeo, Orazio

Publication type:

Article

The Genome of the Fungal-Interactive Soil Bacterium Burkholderia terrae BS001—A Plethora of Outstanding Interactive Capabilities Unveiled.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 7, p. 1652, doi. 10.1093/gbe/evu126

By:

Haq, Irshad Ul;
Graupner, Katharina;
Nazir, Rashid;
van Elsas, Jan Dirk

Publication type:

Article

Fungal Cytochrome P450 Monooxygenases: Their Distribution, Structure, Functions, Family Expansion, and Evolutionary Origin.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 7, p. 1620, doi. 10.1093/gbe/evu132

By:

Chen, Wanping;
Lee, Mi-Kyung;
Jefcoate, Colin;
Kim, Sun-Chang;
Chen, Fusheng;
Yu, Jae-Hyuk

Publication type:

Article

Ecology Drives the Distribution of Specialized Tyrosine Metabolism Modules in Fungi.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 1, p. 121, doi. 10.1093/gbe/evt208

By:

Greene, George H.;
McGary, Kriston L.;
Rokas, Antonis;
Slot, Jason C.

Publication type:

Article

Chaperones Divide Yeast Proteins into Classes of Expression Level and Evolutionary Rate.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 618, doi. 10.1093/gbe/evs025

By:

Bogumil, David;
Landan, Giddy;
Ilhan, Judith;
Dagan, Tal

Publication type:

Article

A New Database (GCD) on Genome Composition for Eukaryote and Prokaryote Genome Sequences and Their Initial Analyses.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 501, doi. 10.1093/gbe/evs026

By:

Kryukov, Kirill;
Sumiyama, Kenta;
Ikeo, Kazuho;
Gojobori, Takashi;
Saitou, Naruya

Publication type:

Article

Intron Gains and Losses in the Evolution of Fusarium and Cryptococcus Fungi.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 1148, doi. 10.1093/gbe/evs091

By:

Croll, Daniel;
McDonald, Bruce A.

Publication type:

Article

Reconstruction of Oomycete Genome Evolution Identifies Differences in Evolutionary Trajectories Leading to Present-Day Large Gene Families.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 3, p. 199, doi. 10.1093/gbe/evs003

By:

Seidl, Michael F.;
Van den Ackerveken, Guido;
Govers, Francine;
Snel, Berend

Publication type:

Article

Causes and Consequences of Genome Expansion in Fungi.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 1, p. 13, doi. 10.1093/gbe/evr124

By:

Kelkar, Yogeshwar D.;
Ochman, Howard

Publication type:

Article

FUNGAL GENOMIC PROJECTS, METAGENOMICS AND GENE ANALYSES.

Published in:

Jundishapur Journal of Microbiology, 2013, p. 14

By:

Kazemi, Abdolhassan

Publication type:

Article

Genome assembly of two California isolates of Seiridium cardinale (BM-138-000494 and BM-138-000479).

Published in:

Journal of Plant Pathology, 2024, v. 106, n. 3, p. 1389, doi. 10.1007/s42161-024-01665-5

By:

Scali, Edoardo;
Rocca, Gianni Della;
Danti, Roberto;
Garbelotto, Matteo;
Barberini, Sara;
Emiliani, Giovanni

Publication type:

Article

Transcriptome and proteome analyses of proteases in biotroph fungal pathogen Cladosporium fulvum.

Published in:

Journal of Plant Pathology, 2020, v. 102, n. 2, p. 377, doi. 10.1007/s42161-019-00433-0

By:

Karimi Jashni, Mansoor;
van der Burgt, Ate;
Battaglia, Evy;
Mehrabi, Rahim;
Collemare, Jérôme;
de Wit, Pierre J. G. M.

Publication type:

Article

Dynamic genome-scale metabolic modeling of the yeast Pichia pastoris.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0408-2

By:

Saitua, Francisco;
Torres, Paulina;
Pérez-Correa, José Ricardo;
Agosin, Eduardo

Publication type:

Article

The complete mitochondrial genome of the Dutch elm disease fungus Ophiostoma novo-ulmi subsp. novo-ulmi.

Published in:

Canadian Journal of Microbiology, 2018, v. 64, n. 5, p. 339, doi. 10.1139/cjm-2017-0605

By:

Abboud, Talal George;
Zubaer, Abdullah;
Wai, Alvan;
Hausner, Georg

Publication type:

Article

Identification and characterization of GEO1, a new class II hydrophobin from Geosmithia spp.

Published in:

Canadian Journal of Microbiology, 2012, v. 58, n. 8, p. 965, doi. 10.1139/w2012-069

By:

Bettini, Priscilla P.;
Frascella, Arcangela;
Comparini, Cecilia;
Carresi, Lara;
Pepori, Alessia L.;
Pazzagli, Luigia;
Cappugi, Gianni;
Scala, Felice;
Scala, Aniello

Publication type:

Article

Classification and evolutionary analysis of the basic helix-loop-helix gene family in the green anole lizard, Anolis carolinensis.

Published in:

Molecular Genetics & Genomics, 2013, v. 288, n. 7/8, p. 365, doi. 10.1007/s00438-013-0755-7

By:

Liu, Ake;
Wang, Yong;
Zhang, Debao;
Wang, Xuhua;
Song, Huifang;
Dang, Chunwang;
Yao, Qin;
Chen, Keping

Publication type:

Article

Halogenation in Fungi: What Do We Know and What Remains to Be Discovered?

Published in:

Molecules, 2022, v. 27, n. 10, p. 3157, doi. 10.3390/molecules27103157

By:

Cochereau, Bastien;
Meslet-Cladière, Laurence;
Pouchus, Yves François;
Grovel, Olivier;
Roullier, Catherine

Publication type:

Article

C7-prenylation of tryptophanyl and O-prenylation of tyrosyl residues in dipeptides by an Aspergillus terreus prenyltransferase.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 4, p. 1719, doi. 10.1007/s00253-014-5999-6

By:

Wunsch, Carsten;
Zou, Hui-Xi;
Linne, Uwe;
Li, Shu-Ming

Publication type:

Article

Aspergillus niger RhaR, a regulator involved in l-rhamnose release and catabolism.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 12, p. 5531, doi. 10.1007/s00253-014-5607-9

By:

Gruben, Birgit;
Zhou, Miaomiao;
Wiebenga, Ad;
Ballering, Joost;
Overkamp, Karin;
Punt, Peter;
Vries, Ronald

Publication type:

Article

Genomic structural variations contribute to trait improvement during whole-genome shuffling of yeast.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 7, p. 3059, doi. 10.1007/s00253-013-5423-7

By:

Zheng, Dao-Qiong;
Chen, Jie;
Zhang, Ke;
Gao, Ke-Hui;
Li, Ou;
Wang, Pin-Mei;
Zhang, Xiao-Yang;
Du, Feng-Guang;
Sun, Pei-Yong;
Qu, Ai-Min;
Wu, Shuang;
Wu, Xue-Chang

Publication type:

Article

Genome sequence of a novel endornavirus from the phytopathogenic fungus Alternaria brassicicola.

Published in:

Archives of Virology, 2015, v. 160, n. 7, p. 1827, doi. 10.1007/s00705-015-2426-y

By:

Shang, Hong-Hong;
Zhong, Jie;
Zhang, Ru-Jia;
Chen, Chuan-Yuan;
Gao, Bi-Da;
Zhu, Hong-Jian

Publication type:

Article