Works matching AU Stunnenberg, Hendrik G.


Results: 101
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    FACIL: Fast and Accurate Genetic Code Inference and Logo.

    Published in:
    Bioinformatics, 2011, v. 27, n. 14, p. 1929, doi. 10.1093/bioinformatics/btr316
    By:
    • Dutilh, Bas E.;
    • Jurgelenaite, Rasa;
    • Szklarczyk, Radek;
    • van Hijum, Sacha A.F.T.;
    • Harhangi, Harry R.;
    • Schmid, Markus;
    • de Wild, Bart;
    • Françoijs, Kees−Jan;
    • Stunnenberg, Hendrik G.;
    • Strous, Marc;
    • Jetten, Mike S.M.;
    • Op den Camp, Huub J.M.;
    • Huynen, Martijn A.
    Publication type:
    Article
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    Characterization of genome-wide p53-binding sites upon stress response.

    Published in:
    Nucleic Acids Research, 2008, v. 36, n. 11, p. 3639, doi. 10.1093/nar/gkn232
    By:
    • Smeenk, Leonie;
    • van Heeringen, Simon J.;
    • Koeppel, Max;
    • van Driel, Marc A.;
    • Bartels, Stefanie J. J.;
    • Akkers, Robert C.;
    • Denissov, Sergei;
    • Stunnenberg, Hendrik G.;
    • Lohrum, Marion
    Publication type:
    Article
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    Antiviral responses induced by Tdap-IPV vaccination are associated with persistent humoral immunity to Bordetella pertussis.

    Published in:
    Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46560-w
    By:
    • Gillard, Joshua;
    • Suffiotti, Madeleine;
    • Brazda, Peter;
    • Venkatasubramanian, Prashanna B.;
    • Versteegen, Pauline;
    • de Jonge, Marien I.;
    • Kelly, Dominic;
    • Bibi, Sagida;
    • Pinto, Marta Valente;
    • Simonetti, Elles;
    • Babiceanu, Mihaela;
    • Kettring, Andrew;
    • Teodosio, Cristina;
    • de Groot, Ronald;
    • Berbers, Guy;
    • Stunnenberg, Hendrik G.;
    • Schanen, Brian;
    • Fenwick, Craig;
    • Huynen, Martijn A.;
    • Diavatopoulos, Dimitri A.
    Publication type:
    Article
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    The Organoid Cell Atlas.

    Published in:
    2021
    By:
    • Bock, Christoph;
    • Boutros, Michael;
    • Camp, J. Gray;
    • Clarke, Laura;
    • Clevers, Hans;
    • Knoblich, Juergen A.;
    • Liberali, Prisca;
    • Regev, Aviv;
    • Rios, Anne C.;
    • Stegle, Oliver;
    • Stunnenberg, Hendrik G.;
    • Teichmann, Sarah A.;
    • Treutlein, Barbara;
    • Vries, Robert G. J.
    Publication type:
    Letter
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    Saturation analysis for whole-genome bisulfite sequencing data.

    Published in:
    Nature Biotechnology, 2016, v. 34, n. 7, p. 691, doi. 10.1038/nbt.3524
    By:
    • Libertini, Emanuele;
    • Heath, Simon C;
    • Hamoudi, Rifat A;
    • Gut, Marta;
    • Ziller, Michael J;
    • Herrero, Javier;
    • Czyz, Agata;
    • Ruotti, Victor;
    • Stunnenberg, Hendrik G;
    • Frontini, Mattia;
    • Ouwehand, Willem H;
    • Meissner, Alexander;
    • Gut, Ivo G;
    • Beck, Stephan
    Publication type:
    Article
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    CBX2 shapes chromatin accessibility promoting AML via p38 MAPK signaling pathway.

    Published in:
    Molecular Cancer, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12943-022-01603-y
    By:
    • Del Gaudio, Nunzio;
    • Di Costanzo, Antonella;
    • Liu, Ning Qing;
    • Conte, Lidio;
    • Dell'Aversana, Carmela;
    • Bove, Guglielmo;
    • Benedetti, Rosaria;
    • Montella, Liliana;
    • Ciardiello, Fortunato;
    • Carafa, Vincenzo;
    • Ambrosino, Concetta;
    • Tucci, Valeria;
    • Conte, Mariarosaria;
    • Martens, Joost H. A.;
    • Stunnenberg, Hendrik G.;
    • Nebbioso, Angela;
    • Altucci, Lucia
    Publication type:
    Article
    16

    Genome-Wide Profiling of Liver X Receptor, Retinoid X Receptor, and Peroxisome Proliferator-Activated Receptor a in Mouse Liver Reveals Extensive Sharing of Binding Sites.

    Published in:
    Molecular & Cellular Biology, 2012, v. 32, n. 4, p. 12, doi. 10.1128/MCB.06175-11
    By:
    • Boergesen, Michael;
    • Pedersen, Thomas Åskov;
    • Gross, Barbara;
    • van Heeringen, Simon J.;
    • Hagenbeek, Dik;
    • Bindesbøll, Christian;
    • Caron, Sandrine;
    • Lalloyer, Fanny;
    • Steffensen, Knut R.;
    • Nebb, Hilde I .;
    • Gustafsson, Jan-Åke;
    • Stunnenberg, Hendrik G.;
    • Staels, Bart;
    • Mandrup, Susanne
    Publication type:
    Article
    17

    Correction to: Rewiring of glucose metabolism defines trained immunity induced by oxidized low-density lipoprotein.

    Published in:
    2020
    By:
    • Keating, Samuel T.;
    • Groh, Laszlo;
    • Thiem, Kathrin;
    • Bekkering, Siroon;
    • Li, Yang;
    • Matzaraki, Vasiliki;
    • van der Heijden, Charlotte D. C. C.;
    • van Puffelen, Jelmer H.;
    • Lachmandas, Ekta;
    • Jansen, Trees;
    • Oosting, Marije;
    • de Bree, L. Charlotte J.;
    • Koeken, Valerie A. C. M.;
    • Moorlag, Simone J. C. F. M.;
    • Mourits, Vera P.;
    • van Diepen, Janna;
    • Stienstra, Rinke;
    • Novakovic, Boris;
    • Stunnenberg, Hendrik G.;
    • van Crevel, Reinout
    Publication type:
    Correction Notice
    18

    Rewiring of glucose metabolism defines trained immunity induced by oxidized low-density lipoprotein.

    Published in:
    Journal of Molecular Medicine, 2020, v. 98, n. 6, p. 819, doi. 10.1007/s00109-020-01915-w
    By:
    • Keating, Samuel T.;
    • Groh, Laszlo;
    • Thiem, Kathrin;
    • Bekkering, Siroon;
    • Li, Yang;
    • Matzaraki, Vasiliki;
    • van der Heijden, Charlotte D. C. C.;
    • van Puffelen, Jelmer H.;
    • Lachmandas, Ekta;
    • Jansen, Trees;
    • Oosting, Marije;
    • de Bree, L. Charlotte J.;
    • Koeken, Valerie A. C. M.;
    • Moorlag, Simone J. C. F. M.;
    • Mourits, Vera P.;
    • van Diepen, Janna;
    • Strienstra, Rinke;
    • Novakovic, Boris;
    • Stunnenberg, Hendrik G.;
    • van Crevel, Reinout
    Publication type:
    Article
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    Blood monocyte transcriptome and epigenome analyses reveal loci associated with human atherosclerosis.

    Published in:
    Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00517-4
    By:
    • Yongmei Liu;
    • Reynolds, Lindsay M.;
    • Jingzhong Ding;
    • Li Hou;
    • Lohman, Kurt;
    • Young, Tracey;
    • Wei Cui;
    • Zhiqing Huang;
    • Grenier, Carole;
    • Ma Wan;
    • Stunnenberg, Hendrik G.;
    • Siscovick, David;
    • Lifang Hou;
    • Psaty, Bruce M.;
    • Rich, Stephen S.;
    • Rotter, Jerome I.;
    • Kaufman, Joel D.;
    • Burke, Gregory L.;
    • Murphy, Susan;
    • Jacobs Jr., David R.
    Publication type:
    Article
    21

    Whole-genome fingerprint of the DNA methylome during human B cell differentiation.

    Published in:
    Nature Genetics, 2015, v. 47, n. 7, p. 746, doi. 10.1038/ng.3291
    By:
    • Kulis, Marta;
    • Queirós, Ana C;
    • Castellano, Giancarlo;
    • Beekman, Renée;
    • Clot, Guillem;
    • Verdaguer-Dot, Néria;
    • Russiñol, Nuria;
    • Vilarrasa-Blasi, Roser;
    • Campo, Elías;
    • Martín-Subero, José I;
    • Caron, Gersende;
    • Fest, Thierry;
    • Muench, Marcus O;
    • Fomin, Marina E;
    • Lee, Seung-Tae;
    • Wiemels, Joseph L;
    • Stunnenberg, Hendrik G;
    • Siebert, Reiner;
    • Küppers, Ralf;
    • Merkel, Angelika
    Publication type:
    Article
    22

    Controlled Assembly of Macromolecular β-Sheet Fibrils.

    Published in:
    Angewandte Chemie, 2005, v. 117, n. 13, p. 2004, doi. 10.1002/ange.200462415
    By:
    • Jurgen M. Smeenk;
    • Matthijs B. J. Otten;
    • Jens Thies;
    • David A. Tirrell;
    • Hendrik G. Stunnenberg;
    • Jan C. M. van Hest
    Publication type:
    Article
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    p63 exerts spatio-temporal control of palatal epithelial cell fate to prevent cleft palate.

    Published in:
    PLoS Genetics, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pgen.1006828
    By:
    • Richardson, Rose;
    • Mitchell, Karen;
    • Hammond, Nigel L.;
    • Mollo, Maria Rosaria;
    • Kouwenhoven, Evelyn N.;
    • Wyatt, Niki D.;
    • Donaldson, Ian J.;
    • Zeef, Leo;
    • Burgis, Tim;
    • Blance, Rognvald;
    • van Heeringen, Simon J.;
    • Stunnenberg, Hendrik G.;
    • Zhou, Huiqing;
    • Missero, Caterina;
    • Romano, Rose Anne;
    • Sinha, Satrajit;
    • Dixon, Michael J.;
    • Dixon, Jill
    Publication type:
    Article
    26

    Genome-Wide Pattern of TCF7L2/TCF4 Chromatin Occupancy in Colorectal Cancer Cells.

    Published in:
    Molecular & Cellular Biology, 2008, v. 28, n. 8, p. 19, doi. 10.1128/MCB.02175-07
    By:
    • Hatzis, Pantelis;
    • Van der Flier, Laurens G.;
    • Van Driel, Marc A.;
    • Guryev, Victor;
    • Nielsen, Fiona;
    • Denissov, Sergei;
    • Nijman, Isaäc J.;
    • Koster, Jan;
    • Santo, Evan E.;
    • Welboren, Willem;
    • Versteeg, Rogier;
    • Cuppen, Edwin;
    • Van de Wetering, Marc;
    • Clevers, Hans;
    • Stunnenberg, Hendrik G.
    Publication type:
    Article
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    Epigenetic Regulation of Learning and Memory by Drosophila EHMT/G9a.

    Published in:
    PLoS Biology, 2011, v. 9, n. 1, p. 1, doi. 10.1371/journal.pbio.1000569
    By:
    • Kramer, Jamie M.;
    • Kochinke, Korinna;
    • Oortveld, Merel A. W.;
    • Marks, Hendrik;
    • Kramer, Daniela;
    • de Jong, Eiko K.;
    • Asztalos, Zoltan;
    • Westwood, J. Timothy;
    • Stunnenberg, Hendrik G.;
    • Sokolowski, Marla B.;
    • Keleman, Krystyna;
    • Huiqing Zhou;
    • van Bokhoven, Hans;
    • Schenck, Annette
    Publication type:
    Article
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    A model for the topology of active ribosomal RNA genes.

    Published in:
    EMBO Reports, 2011, v. 12, n. 3, p. 231, doi. 10.1038/embor.2011.8
    By:
    • Denissov, Serguei;
    • Lessard, Frédéric;
    • Mayer, Christine;
    • Stefanovsky, Victor;
    • van Driel, Marc;
    • Grummt, Ingrid;
    • Moss, Tom;
    • Stunnenberg, Hendrik G
    Publication type:
    Article
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    Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20849-y
    By:
    • Vilarrasa-Blasi, Roser;
    • Soler-Vila, Paula;
    • Verdaguer-Dot, Núria;
    • Russiñol, Núria;
    • Di Stefano, Marco;
    • Chapaprieta, Vicente;
    • Clot, Guillem;
    • Farabella, Irene;
    • Cuscó, Pol;
    • Kulis, Marta;
    • Agirre, Xabier;
    • Prosper, Felipe;
    • Beekman, Renée;
    • Beà, Silvia;
    • Colomer, Dolors;
    • Stunnenberg, Hendrik G.;
    • Gut, Ivo;
    • Campo, Elias;
    • Marti-Renom, Marc A.;
    • Martin-Subero, José Ignacio
    Publication type:
    Article
    38

    The translational landscape of ground state pluripotency.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15449-9
    By:
    • Atlasi, Yaser;
    • Jafarnejad, Seyed Mehdi;
    • Gkogkas, Christos G.;
    • Vermeulen, Michiel;
    • Sonenberg, Nahum;
    • Stunnenberg, Hendrik G.
    Publication type:
    Article
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    Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo.

    Published in:
    EMBO Journal, 2010, v. 29, n. 13, p. 2147, doi. 10.1038/emboj.2010.106
    By:
    • Gong-Hong Wei;
    • Badis, Gwenael;
    • Berger, Michael F.;
    • Kivioja, Teemu;
    • Palin, Kimmo;
    • Enge, Martin;
    • Bonke, Martin;
    • Jolma, Arttu;
    • Varjosalo, Markku;
    • Gehrke, Andrew R.;
    • Jian Yan;
    • Talukder, Shaheynoor;
    • Turunen, Mikko;
    • Taipale, Mikko;
    • Stunnenberg, Hendrik G.;
    • Ukkonen, Esko;
    • Hughes, Timothy R.;
    • Bulyk, Martha L.;
    • Taipale, Jussi
    Publication type:
    Article
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    A comprehensive evaluation of rodent malaria parasite genomes and gene expression.

    Published in:
    BMC Biology, 2014, v. 12, n. 1, p. 2, doi. 10.1186/s12915-014-0086-0
    By:
    • Otto, Thomas D.;
    • Böhme, Ulrike;
    • Jackson, Andrew P.;
    • Hunt, Martin;
    • Franke-Fayard, Blandine;
    • Hoeijmakers, Wieteke A. M.;
    • Religa, Agnieszka A.;
    • Robertson, Lauren;
    • Sanders, Mandy;
    • Ogun, Solabomi A.;
    • Cunningham, Deirdre;
    • Erhart, Annette;
    • Billker, Oliver;
    • Khan, Shahid M.;
    • Stunnenberg, Hendrik G.;
    • Langhorne, Jean;
    • Holder, Anthony A.;
    • Waters, Andrew P.;
    • Newbold, Chris I.;
    • Pain, Arnab
    Publication type:
    Article
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