Works matching AU Burke, John M.

Results: 134

Transposome: a toolkit for annotation of transposable element families from unassembled sequence reads.

Published in:

2015

By:

Staton, S. Evan;
Burke, John M.

Publication type:

Product Review

Comparison of dose selection based on target engagement versus inhibition of receptor–ligand interaction for checkpoint inhibitors.

Published in:

CPT: Pharmacometrics & Systems Pharmacology, 2024, v. 13, n. 6, p. 919, doi. 10.1002/psp4.13152

By:

Head, Sarah A.;
Johnson, Carter;
Sarkar, Saheli;
Matteson, Andrew;
Marcantonio, Diana H.;
Hua, Fei;
Burke, John M.;
Apgar, Joshua F.;
Flowers, David

Publication type:

Article

Quantitative systems pharmacology model of GITR‐mediated T cell dynamics in tumor microenvironment.

Published in:

CPT: Pharmacometrics & Systems Pharmacology, 2023, v. 12, n. 3, p. 413, doi. 10.1002/psp4.12925

By:

Ji, Yan;
Madrasi, Kumpal;
Knee, Deborah A.;
Gruenbaum, Lore;
Apgar, Joshua F.;
Burke, John M.;
Gomes, Bruce

Publication type:

Article

Quantitative systems pharmacology model for Alzheimer's disease to predict the effect of aducanumab on brain amyloid.

Published in:

CPT: Pharmacometrics & Systems Pharmacology, 2022, v. 11, n. 3, p. 362, doi. 10.1002/psp4.12759

By:

Lin, Lin;
Hua, Fei;
Salinas, Cristian;
Young, Carissa;
Bussiere, Thierry;
Apgar, Joshua F.;
Burke, John M.;
Kandadi Muralidharan, Kumar;
Rajagovindan, Rajasimhan;
Nestorov, Ivan

Publication type:

Article

Virtual clinical trial simulations for a novel KRASG12C inhibitor (ASP2453) in non‐small cell lung cancer.

Published in:

CPT: Pharmacometrics & Systems Pharmacology, 2021, v. 10, n. 8, p. 864, doi. 10.1002/psp4.12661

By:

Sayama, Hiroyuki;
Marcantonio, Diana;
Nagashima, Takeyuki;
Shimazaki, Masashi;
Minematsu, Tsuyoshi;
Apgar, Joshua F;
Burke, John M.;
Wille, Lucia;
Nagasaka, Yasuhisa;
Kirouac, Daniel C.

Publication type:

Article

A systems pharmacology model for gene therapy in sickle cell disease.

Published in:

CPT: Pharmacometrics & Systems Pharmacology, 2021, v. 10, n. 7, p. 696, doi. 10.1002/psp4.12638

By:

Zheng, Bo;
Wille, Lucia;
Peppel, Karsten;
Hagen, David;
Matteson, Andrew;
Ahlers, Jeffrey;
Schaff, James;
Hua, Fei;
Yuraszeck, Theresa;
Cobbina, Enoch;
Apgar, Joshua F.;
Burke, John M.;
Roberts, John;
Das, Raibatak

Publication type:

Article

Quantitative Systems Pharmacology Model of a Masked, Tumor‐Activated Antibody.

Published in:

CPT: Pharmacometrics & Systems Pharmacology, 2019, v. 8, n. 9, p. 676, doi. 10.1002/psp4.12448

By:

Stroh, Mark;
Sagert, Jason;
Burke, John M.;
Apgar, Joshua F.;
Lin, Lin;
Millard, Bjorn L.;
Michael Kavanaugh, W.

Publication type:

Article

Impact of Deficit Irrigation on Shallow Saline Groundwater Contribution and Sunflower Productivity in the Imperial Valley, California.

Published in:

Water (20734441), 2020, v. 12, n. 2, p. 571, doi. 10.3390/w12020571

By:

Eltarabily, Mohamed Galal;
Burke, John M.;
Bali, Khaled M.

Publication type:

Article

Effect of Deficit Irrigation on Nitrogen Uptake of Sunflower in the Low Desert Region of California.

Published in:

Water (20734441), 2019, v. 11, n. 11, p. 2340, doi. 10.3390/w11112340

By:

Eltarabily, Mohamed Galal;
Burke, John M.;
Bali, Khaled M.

Publication type:

Article

Daratumumab, bortezomib, cyclophosphamide and dexamethasone in newly diagnosed and relapsed multiple myeloma: LYRA study.

Published in:

British Journal of Haematology, 2019, v. 185, n. 3, p. 492, doi. 10.1111/bjh.15806

By:

Yimer, Habte;
Ukropec, Jon;
Qi, Ming;
Rifkin, Robert M.;
Melear, Jason;
Faber, Edward;
Bensinger, William I.;
Burke, John M.;
Narang, Mohit;
Stevens, Don;
Gunawardena, Sriya;
Lutska, Yana;
Lin, Thomas S.;
Qi, Keqin

Publication type:

Article

Ublituximab ( TG-1101), a novel glycoengineered anti- CD20 antibody, in combination with ibrutinib is safe and highly active in patients with relapsed and/or refractory chronic lymphocytic leukaemia: results of a phase 2 trial.

Published in:

British Journal of Haematology, 2017, v. 176, n. 3, p. 412, doi. 10.1111/bjh.14447

By:

Sharman, Jeff P.;
Farber, Charles M.;
Mahadevan, Daruka;
Schreeder, Marshall T.;
Brooks, Heather D.;
Kolibaba, Kathryn S.;
Fanning, Suzanne;
Klein, Leonard;
Greenwald, Daniel R.;
Sportelli, Peter;
Miskin, Hari P.;
Weiss, Michael S.;
Burke, John M.

Publication type:

Article

P1064: BRENTUXIMAB VEDOTIN, NIVOLUMAB, DOXORUBICIN, AND DACARBAZINE FOR ADVANCED STAGE CLASSICAL HODGKIN LYMPHOMA: UPDATED EFFICACY AND SAFETY RESULTS FROM THE SINGLE ARM PHASE 2 STUDY.

Published in:

HemaSphere, 2023, v. 7, p. 1, doi. 10.1097/01.HS9.0000971152.58813.12

By:

Yasenchak, Chris;
Flinn, Ian W.;
Melear, Jason;
Ramchandren, Rod;
Friedman, Judah;
Burke, John M.;
Linhares, Yuliya;
Gonzales, Paul;
Raval, Mihir;
Chintapatla, Rangaswamy;
Feldman, Tatyana A.;
Yimer, Habte;
Islas‐Ohlmayer, Miguel;
Dean, Asad;
Rana, Vishal;
Gandhi, Mitul D.;
Renshaw, John;
Ho, Linda;
Fanale, Michelle;
Guo, Wenchuan

Publication type:

Article

P633: UPDATED SAFETY AND EFFICACY RESULTS OF ZANUBRUTINIB IN PATIENTS WITH B‐CELL MALIGNANCIES WHO ARE INTOLERANT OF IBRUTINIB AND/OR ACALABRUTINIB.

Published in:

HemaSphere, 2023, v. 7, p. 1, doi. 10.1097/01.HS9.0000969436.70152.b3

By:

Shadman, Mazyar;
Y. Levy, Moshe;
Porter, Ryan;
M. Burke, John;
L. Cultrera, Jennifer;
Misleh, Jamal;
Sharman, Jeff;
F. Zafar, Syed;
By, Kunthel;
Cohen, Aileen;
Crescenzo, Rocco;
Idoine, Adam;
W. Flinn, Ian

Publication type:

Article

Multiple genomic regions influence root morphology and seedling growth in cultivated sunflower (Helianthus annuus L.) under well-watered and water-limited conditions.

Published in:

PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0204279

By:

Masalia, Rishi R.;
Temme, Andries A.;
Torralba, Nicole de leon;
Burke, John M.

Publication type:

Article

Systematic calibration of a cell signaling network model.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 202, doi. 10.1186/1471-2105-11-202

By:

Kyoung Ae Kim;
Spencer, Sabrina L.;
Albeck, John G.;
Burke, John M.;
Sorger, Peter K.;
Gaudet, Suzanne;
Do Hyun Kim

Publication type:

Article

Positive Selection and Expression Divergence Following Gene Duplication in the Sunflower CYCLOIDEA Gene Family.

Published in:

Molecular Biology & Evolution, 2008, v. 25, n. 7, p. 1260, doi. 10.1093/molbev/msn001

By:

Chapman, Mark A.;
Leebens-Mack, James H.;
Burke, John M.

Publication type:

Article

Fitness effects and genetic architecture of plant–herbivore interactions in sunflower crop–wild hybrids.

Published in:

New Phytologist, 2009, v. 184, n. 4, p. 828, doi. 10.1111/j.1469-8137.2009.02964.x

By:

Dechaine, Jennifer M.;
Burger, Jutta C.;
Chapman, Mark A.;
Seiler, Gerald J.;
Brunick, Robert;
Knapp, Steve J.;
Burke, John M.

Publication type:

Article

Letting the gene out of the bottle: the population genetics of genetically modified crops.

Published in:

New Phytologist, 2006, v. 170, n. 3, p. 429, doi. 10.1111/j.1469-8137.2006.01710.x

By:

Chapman, Mark A.;
Burke, John M.

Publication type:

Article

A Unified Single Nucleotide Polymorphism Map of Sunflower (Helianthus annuus L.) Derived from Current Genomic Resources.

Published in:

Crop Science, 2015, v. 55, n. 4, p. 1696, doi. 10.2135/cropsci2014.11.0752

By:

Hulke, Brent S.;
Grassa, Christopher J.;
Bowers, John E.;
Burke, John M.;
Lili Qi;
Talukder, Zahirul I.;
Rieseberg, Loren H.

Publication type:

Article

Phylogeography and the Evolutionary History of Sunflower (Helianthus annuus L.): Wild Diversity and the Dynamics of Domestication.

Published in:

Genes, 2020, v. 11, n. 3, p. 266, doi. 10.3390/genes11030266

By:

Park, Brian;
Burke, John M.

Publication type:

Article

THE POTENTIAL FOR GENE FLOW BETWEEN CULTIVATED AND WILD SUNFLOWER (HELIANTHUS ANNUUS) IN THE UNITED STATES.

Published in:

American Journal of Botany, 2002, v. 89, n. 9, p. 1550, doi. 10.3732/ajb.89.9.1550

By:

Burke, John M.;
Gardner, Keith A.;
Rieseberg, Loren H.

Publication type:

Article

Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives.

Published in:

Molecular Ecology Resources, 2014, v. 14, n. 1, p. 166, doi. 10.1111/1755-0998.12163

By:

Hodgins, Kathryn A.;
Lai, Zhao;
Oliveira, Luiz O.;
Still, David W.;
Scascitelli, Moira;
Barker, Michael S.;
Kane, Nolan C.;
Dempewolf, Hannes;
Kozik, Alex;
Kesseli, Richard V.;
Burke, John M.;
Michelmore, Richard W.;
Rieseberg, Loren H.

Publication type:

Article

Sunflower genetic, genomic and ecological resources.

Published in:

Molecular Ecology Resources, 2013, v. 13, n. 1, p. 10, doi. 10.1111/1755-0998.12023

By:

Kane, Nolan C.;
Burke, John M.;
Marek, Laura;
Seiler, Gerald;
Vear, Felicity;
Baute, Gregory;
Knapp, Steven J.;
Vincourt, Patrick;
Rieseberg, Loren H.

Publication type:

Article

Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae).

Published in:

Theoretical & Applied Genetics, 2007, v. 115, n. 6, p. 747, doi. 10.1007/s00122-007-0605-2

By:

Chapman, Mark A.;
JianCheng Chang;
Weisman, David;
Kesseli, Rick V.;
Burke, John M.

Publication type:

Article

Chloroplast SSR polymorphisms in the Compositae and the mode of organellar inheritance in Helianthus annuus.

Published in:

Theoretical & Applied Genetics, 2005, v. 110, n. 5, p. 941, doi. 10.1007/s00122-004-1914-3

By:

Wills, David M.;
Hester, Melissa L.;
Liu, Aizhong;
Burke, John M.

Publication type:

Article

Model‐Informed Drug Development of the Masked Anti‑PD‑L1 Antibody CX‐072.

Published in:

Clinical Pharmacology & Therapeutics, 2021, v. 109, n. 2, p. 383, doi. 10.1002/cpt.1985

By:

Stroh, Mark;
Green, Michelle;
Millard, Bjorn L.;
Apgar, Joshua F.;
Burke, John M.;
Garner, Will;
Lu, Hong;
Lyman, Susan K.;
Desnoyers, Luc R.;
Richardson, Jennifer;
Hannah, Alison;
Kavanaugh, W. Michael

Publication type:

Article

Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis.

Published in:

Nature, 2009, v. 459, n. 7245, p. 428, doi. 10.1038/nature08012

By:

Spencer, Sabrina L.;
Gaudet, Suzanne;
Albeck, John G.;
Burke, John M.;
Sorger, Peter K.

Publication type:

Article

Retrospective Analysis With Propensity Score Matching of Peripheral T-Cell Lymphoma Treated Frontline With Brentuximab Vedotin and Chemotherapy.

Published in:

Oncologist, 2023, v. 28, n. 6, p. 520, doi. 10.1093/oncolo/oyad068

By:

Burke, John M;
Liu, Nicholas;
Yu, Kristina S;
Fanale, Michelle A;
Surinach, Andy;
Flores, Carlos;
Lisano, Julie;
Phillips, Tycel

Publication type:

Article

Single Nucleotide Polymorphisms and Linkage Disequilibrium in Sunflower.

Published in:

Genetics, 2007, v. 177, n. 1, p. 457, doi. 10.1534/genetics.107.074054

By:

Kolkman, Judith M.;
Berry, Simon T.;
Leon, Aiberto J.;
Slabaugh, Mary B.;
Shunxue Tang;
Wenxiang Gao;
Shintani, David K.;
Burke, John M.;
Knapp, Steven J.

Publication type:

Article

Quantitative Trait Locus Analysis of the Early Domestication of Sunflower.

Published in:

Genetics, 2007, v. 176, n. 4, p. 2589, doi. 10.1534/genetics.107.075333

By:

Wills, David M.;
Burke, John M.

Publication type:

Article

Patterns of Nucleotide Diversity in Wild and Cultivated Sunflower.

Published in:

Genetics, 2006, v. 173, n. 1, p. 321, doi. 10.1534/genetics.105.051110

By:

Aizhong Liu;
Burke, John M.

Publication type:

Article

Genetic Consequences of Selection During the Evolution of Cultivated Sunflower.

Published in:

Genetics, 2005, v. 171, n. 4, p. 1933, doi. 10.1534/genetics.104.039057

By:

Burke, John M.;
Knapp, Steven J.;
Rieseberg, Loren H.

Publication type:

Article

Extensive Chromosomal Repatterning and the Evolution of Sterility Barriers in Hybrid Sunflower Species.

Published in:

Genetics, 2005, v. 171, n. 1, p. 291, doi. 10.1534/genetics.105.042242

By:

Zhao Lai;
Nakazato, Takuya;
Salmaso, Marzia;
Burke, John M.;
Shunxue Tang;
Knapp, Steven J.;
Rieseberg, Loren H.

Publication type:

Article

Comparative Mapping and Rapid Karyotypic Evolution in the Genus Helianthus.

Published in:

Genetics, 2004, v. 167, n. 1, p. 449, doi. 10.1534/genetics.167.1.449

By:

Burke, John M.;
Zhao Lai;
Salmaso, Marzia;
Nakazato, Takuya;
Shungxue Tang;
Heesacker, Adam;
Knapp, Steven J.;
Rieseberg, Loren H.

Publication type:

Article

Genetic Analysis of Sunflower Domestication.

Published in:

Genetics, 2002, v. 161, n. 3, p. 1257, doi. 10.1093/genetics/161.3.1257

By:

Burke, John M.;
Shunxue Tang;
Knapp, Steven J.;
Riesenberg, Loren H.

Publication type:

Article

Trait variation and performance across varying levels of drought stress in cultivated sunflower (Helianthus annuus L.).

Published in:

AoB Plants, 2024, v. 16, n. 4, p. 1, doi. 10.1093/aobpla/plae031

By:

Earley, Ashley M;
Nolting, Kristen M;
Donovan, Lisa A;
Burke, John M

Publication type:

Article

Historic breeding practices contribute to germplasm divergence in leaf specialized metabolism and ecophysiology in cultivated sunflower (Helianthus annuus).

Published in:

American Journal of Botany, 2024, v. 111, n. 11, p. 1, doi. 10.1002/ajb2.16420

By:

Dowell, Jordan A.;
Bowsher, Alan W.;
Jamshad, Amna;
Shah, Rahul;
Burke, John M.;
Donovan, Lisa A.;
Mason, Chase M.

Publication type:

Article

GENETIC DIVERSITY IN CARTHAMUS TINCTORIUS (ASTERACEAE; SAFFLOWER), AN UNDERUTILIZED OILSEED CROP.

Published in:

American Journal of Botany, 2014, v. 101, n. 10, p. 1640, doi. 10.3732/ajb.1400079

By:

Pearl, Stephanie A.;
Burke, John M.

Publication type:

Article

GENOMICS OF COMPOSITAE WEEDS: EST LIBRARIES, MICROARRAYS, AND EVIDENCE OF INTROGRESSION.

Published in:

American Journal of Botany, 2012, v. 99, n. 2, p. 209, doi. 10.3732/ajb.1100313

By:

Zhao Lai;
Kane, Nolan C.;
Kozik, Alex;
Hodgins, Kathryn A.;
Dlugosch, Katrina M.;
Barker, Michael S.;
Matvienko, Marta;
Qian Yu;
Turner, Kathryn G.;
Pearl, Stephanie Anne;
Bell, Graeme D. M.;
Yi Zou;
Grassa, Chris;
Guggisberg, Alessla;
Adams, Keith L.;
Anderson, James V.;
Horvath, David P.;
Kesseli, Richard V.;
Burke, John M.;
Michelmore, Richard W.

Publication type:

Article

POPULATION GENETIC ANALYSIS OF SAFFLOWER (CARTHAMUS TINCT0RIUS; ASTERACEAE) REVEALS A NEAR EASTERN ORIGIN AND FIVE CENTERS OF DIVERSITY1.

Published in:

American Journal of Botany, 2010, v. 97, n. 5, p. 831, doi. 10.3732/ajb.0900137

By:

Chapman, Mark A.;
Hvala, John;
Strever, Jason;
Burke, John M.

Publication type:

Article

MOLECULAR INSIGHTS INTO THE EVOLUTION OF CROP PLANTS.

Published in:

American Journal of Botany, 2008, v. 95, n. 2, p. 113, doi. 10.3732/ajb.95.2.113

By:

Burger, Jutta C.;
Chapman, Mark A.;
Burke, John M.

Publication type:

Article

Phenotypic and transcriptomic responses of cultivated sunflower seedlings (Helianthus annuus L.) to four abiotic stresses.

Published in:

PLoS ONE, 2022, v. 17, n. 9, p. 1, doi. 10.1371/journal.pone.0275462

By:

Barnhart, Max H.;
Masalia, Rishi R.;
Mosley, Liana J.;
Burke, John M.

Publication type:

Article

Systematic in silico analysis of clinically tested drugs for reducing amyloid‐beta plaque accumulation in Alzheimer's disease.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2021, v. 17, n. 9, p. 1487, doi. 10.1002/alz.12312

By:

Madrasi, Kumpal;
Das, Raibatak;
Mohmmadabdul, Hafiz;
Lin, Lin;
Hyman, Bradley T.;
Lauffenburger, Douglas A.;
Albers, Mark W.;
Rissman, Robert A.;
Burke, John M.;
Apgar, Joshua F.;
Wille, Lucia;
Gruenbaum, Lore;
Hua, Fei

Publication type:

Article

Range-wide phenotypic and genetic differentiation in wild sunflower.

Published in:

BMC Plant Biology, 2016, v. 16, p. 1, doi. 10.1186/s12870-016-0937-7

By:

McAssey, Edward V.;
Corbi, Jonathan;
Burke, John M.

Publication type:

Article

Association mapping in sunflower (Helianthus annuus L.) reveals independent control of apical vs. basal branching.

Published in:

BMC Plant Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12870-015-0458-9

By:

Nambeesan, Savithri U.;
Mandel, Jennifer R.;
Bowers, John E.;
Marek, Laura F.;
Ebert, Daniel;
Corbi, Jonathan;
Rieseberg, Loren H.;
Knapp, Steven J.;
Burke, John M.

Publication type:

Article

Genetic analysis of safflower domestication.

Published in:

BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2229-14-43

By:

Pearl, Stephanie A.;
Bowers, John E.;
Reyes-Chin-Wo, Sebastian;
Michelmore, Richard W.;
Burke, John M.

Publication type:

Article

DNA sequence diversity and the origin of cultivated safflower(Carthamus tinctorius L.; Asteraceae).

Published in:

BMC Plant Biology, 2007, v. 7, p. 60, doi. 10.1186/1471-2229-7-60

By:

Chapman, Mark A.;
Burke, John M.

Publication type:

Article

Widespread Gene Conversion in Centromere Cores.

Published in:

PLoS Biology, 2010, v. 8, n. 3, p. 1, doi. 10.1371/journal.pbio.1000327

By:

Jinghua Shi;
Wolf, Sarah E.;
Burke, John M.;
Presting, Gernot G.;
Ross-Ibarra, Jeffrey;
Dawe, R. Kelly

Publication type:

Article

Modeling a Snap-Action, Variable-Delay Switch Controlling Extrinsic Cell Death.

Published in:

PLoS Biology, 2008, v. 6, n. 12, p. e299, doi. 10.1371/journal.pbio.0060299

By:

Albeck, John G.;
Burke, John M.;
Spencer, Sabrina L.;
Lauffenburger, Douglas A.;
Sorger, Peter K.

Publication type:

Article

An evaluation of the potential for drug-drug interactions between bendamustine and rituximab in indolent non-Hodgkin lymphoma and mantle cell lymphoma.

Published in:

2014

By:

Darwish, Mona;
Burke, John M;
Hellriegel, Edward;
Robertson Jr, Philmore;
Phillips, Luann;
Ludwig, Elizabeth;
Munteanu, Mihaela C;
Bond, Mary;
Robertson, Philmore Jr

Publication type:

journal article