Works matching AU Lipsitch, Marc

Results: 199

Linkage-based ortholog refinement in bacterial pangenomes with CLARC Open Access.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 12, p. 1, doi. 10.1093/nar/gkaf488

By:

González Ojeda, Indra;
Palace, Samantha G;
Martinez, Pamela P;
Azarian, Taj;
Grant, Lindsay R;
Hammitt, Laura L;
Hanage, William P;
Lipsitch, Marc

Publication type:

Article

Gain-of-function experiments: time for a real debate.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 1, p. 58, doi. 10.1038/nrmicro3405

By:

Duprex, W. Paul;
Fouchier, Ron A. M.;
Imperiale, Michael J.;
Lipsitch, Marc;
Relman, David A.

Publication type:

Article

Absolute Humidity and the Seasonal Onset of Influenza in the Continental United States.

Published in:

PLoS Biology, 2010, v. 8, n. 2, p. 1, doi. 10.1371/journal.pbio.1000316

By:

Shaman, Jeffrey;
Pitzer, Virginia E.;
Viboud, Cécile;
Grenfell, Bryan T.;
Lipsitch, Marc

Publication type:

Article

Inefficient Cytotoxic T Lymphocyte-Mediated Killing of HIV-1-Infected Cells In Vivo.

Published in:

PLoS Biology, 2006, v. 4, n. 4, p. 0583, doi. 10.1371/journal.pbio.0040090

By:

Asquith, Becca;
Edwards, Charles T. T.;
Lipsitch, Marc;
McLean, Angela R.

Publication type:

Article

Immune escape and attenuated severity associated with the SARS-CoV-2 BA.2.86/JN.1 lineage.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52668-w

By:

Lewnard, Joseph A.;
Mahale, Parag;
Malden, Debbie;
Hong, Vennis;
Ackerson, Bradley K.;
Lewin, Bruno J.;
Link-Gelles, Ruth;
Feldstein, Leora R.;
Lipsitch, Marc;
Tartof, Sara Y.

Publication type:

Article

Determinants of Staphylococcus aureus carriage in the developing infant nasal microbiome.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02209-7

By:

Accorsi, Emma K.;
Franzosa, Eric A.;
Hsu, Tiffany;
Joice Cordy, Regina;
Maayan-Metzger, Ayala;
Jaber, Hanaa;
Reiss-Mandel, Aylana;
Kline, Madeleine;
DuLong, Casey;
Lipsitch, Marc;
Regev-Yochay, Gili;
Huttenhower, Curtis

Publication type:

Article

Temporal rise in the proportion of younger adults and older adolescents among coronavirus disease (COVID-19) cases following the introduction of physical distancing measures, Germany, March to April 2020.

Published in:

Eurosurveillance (15607917), 2020, v. 25, n. 17, p. 2, doi. 10.2807/1560-7917.ES.2020.25.17.2000596

By:

Goldstein, Edward;
Lipsitch, Marc

Publication type:

Article

The Pneumococcal Pilus Predicts the Absence of Staphylococcus aureus Co-Colonization in Pneumococcal Carriers.

Published in:

Clinical Infectious Diseases, 2009, v. 48, n. 6, p. 760, doi. 10.1086/597040

By:

Regev-Yochay, Gili;
Lipsitch, Marc;
Basset, Alan;
Rubinstein, Ethan;
Dagan, Ron;
Raz, Meir;
Malley, Richard

Publication type:

Article

Does Pneumococcal Conjugate Vaccine Influence Staphylococcus aureus Carriage in Children?

Published in:

2008

By:

Regev-Yochay, Gili;
Bogaert, Debby;
Malley, Richard;
Hermans, Peter W. M.;
Veenhoven, Reinier H.;
Sanders, Elisabeth A. M.;
Lipsitch, Marc;
Rubinstein, Ethan

Publication type:

Letter

The Effect of Antiretroviral Therapy on Secondary Transmission of HIV among Men Who Have Sex with Men.

Published in:

Clinical Infectious Diseases, 2007, v. 44, n. 8, p. 1115, doi. 10.1086/512816

By:

McCormick, Alethea W.;
Walensky, Rochelle P.;
Lipsitch, Marc;
Losina, Elena;
Hsu, Heather;
Weinstein, Milton C.;
Paltiel, A. David;
Freedberg, Kenneth A.;
Seage, III, George R.

Publication type:

Article

Modeling Community- and Individual-Level Effects of Child-Care Center Attendance on Pneumococcal Carriage.

Published in:

Clinical Infectious Diseases, 2005, v. 40, n. 9, p. 1215, doi. 10.1086/428580

By:

Huang, Susan S.;
Finkelstein, Jonathan A.;
Lipsitch, Marc

Publication type:

Article

Projected Benefits of Active Surveillance for Vancomycin-Resistant Enterococci in Intensive Care Units.

Published in:

Clinical Infectious Diseases, 2004, v. 38, n. 8, p. 1108, doi. 10.1086/382886

By:

Perencevich, Eli N.;
Fisman, David N.;
Lipsitch, Marc;
Harris, Anthony D.;
Morris, J. Glenn;
Jr.;
Smith, David I.

Publication type:

Article

Control-Group Selection Importance in Studies of Antimicrobial Resistance: Examples Applied to Pseudomonas aeruginosa, Enterococci, and Escherichia coli.

Published in:

Clinical Infectious Diseases, 2002, v. 34, n. 12, p. 1558, doi. 10.1086/340533

By:

Harris, Anthony D.;
Samore, Matthew H.;
Lipsitch, Marc;
Kaye, Keith S.;
Perencevich, Eli;
Carmeli, Yehuda

Publication type:

Article

Understanding the Spread of Antibiotic Resistant Pathogens in Hospitals: Mathematical Models as Tools for Control.

Published in:

Clinical Infectious Diseases, 2001, v. 33, n. 10, p. 1739, doi. 10.1086/323761

By:

Bonten, Marc J.M.;
Austin, Daren J.;
Lipsitch, Marc

Publication type:

Article

Transmissibility of 1918 pandemic influenza.

Published in:

Nature, 2004, v. 432, n. 7019, p. 904, doi. 10.1038/nature03063

By:

Mills, Christina E.;
Robins, James M.;
Lipsitch, Marc

Publication type:

Article

Infectious disease surveillance needs for the United States: lessons from Covid-19.

Published in:

Frontiers in Public Health, 2024, p. 1, doi. 10.3389/fpubh.2024.1408193

By:

Lipsitch, Marc;
Bassett, Mary T.;
Brownstein, John S.;
Elliott, Paul;
Eyre, David;
Grabowski, M. Kate;
Hay, James A.;
Johansson, Michael A.;
Kissler, Stephen M.;
Larremore, Daniel B.;
Layden, Jennifer E.;
Lessler, Justin;
Lynfield, Ruth;
MacCannell, Duncan;
Madoff, Lawrence C.;
Metcalf, C. Jessica E.;
Meyers, Lauren A.;
Ofori, Sylvia K.;
Quinn, Celia;
Bento, Ana I.

Publication type:

Article

Influenza A Hemagglutinin Passage Bias Sites and Host Specificity Mutations.

Published in:

Cells (2073-4409), 2019, v. 8, n. 9, p. 958, doi. 10.3390/cells8090958

By:

Lee, Raphael T. C.;
Chang, Hsiao-Han;
Russell, Colin A.;
Lipsitch, Marc;
Maurer-Stroh, Sebastian

Publication type:

Article

Factors Related to Increasing Prevalence of Resistance to Ciprofloxacin and Other Antimicrobial Drugs in Neisseria gonorrhoeae, United States.

Published in:

Emerging Infectious Diseases, 2012, v. 18, n. 8, p. 1290, doi. 10.3201/eid1808.111202

By:

Goldstein, Edward;
Kirkcaldy, Robert D.;
Reshef, David;
Berman, Stuart;
Weinstock, Hillard;
Sabeti, Pardis;
Del Rio, Carlos;
Hall, Geraldine;
Hook, Edward W.;
Lipsitch, Marc

Publication type:

Article

Mobile Messaging as Surveillance Tool during Pandemic (H1N1) 2009, Mexico.

Published in:

2010

By:

Lajous, Martín;
Danon, Leon;
López-Ridaura, Ruy;
Astley, Christina M.;
Miller, Joel C.;
Dowell, Scott F.;
O'Hagan, Justin J.;
Goldstein, Edward;
Lipsitch, Marc

Publication type:

Letter

Estimates of the Prevalence of Pandemic (H1N1) 2009, United States, April-July 2009.

Published in:

Emerging Infectious Diseases, 2009, v. 15, n. 12, p. 2004, doi. 10.3201/eid1512.091413

By:

Reed, Carrie;
Angulo, Frederick J.;
Swerdlow, David L.;
Lipsitch, Marc;
Meltzer, Martin I.;
Jernigan, Daniel;
Finelli, Lyn

Publication type:

Article

Time from Illness Onset to Death, 1918 Influenza and Pneumococcal Pneumonia.

Published in:

2009

By:

Klugman, Keith P.;
Astley, Christina Mills;
Lipsitch, Marc

Publication type:

Letter

Little evidence for genetic susceptibility to influenza A (H5N1) from family clustering data.

Published in:

2007

By:

Pitzer, Virginia E.;
Olsen, Sonja J.;
Bergstrom, Carl T.;
Dowell, Scott F.;
Lipsitch, Marc

Publication type:

journal article

Alert threshold algorithms and malaria epidemic detection.

Published in:

2004

By:

Teklehaimanot, Hailay Desta;
Schwartz, Joel;
Teklehaimanot, Awash;
Lipsitch, Marc;
Schwatrz, Joel

Publication type:

journal article

Antimicrobial Use and Antimicrobial Resistance: A Population Perspective.

Published in:

Emerging Infectious Diseases, 2002, v. 8, n. 4, p. 347, doi. 10.3201/eid0804.010312

By:

Lipsitch, Marc;
Samore, Matthew H.

Publication type:

Article

Bacterial vaccines and serotype replacement: lessons from Haemophilus influenzae and prospects for Streptococcus pneumoniae.

Published in:

1999

By:

Lipsitch, Marc;
Lipsitch, M

Publication type:

journal article

Leveraging Serosurveillance and Postmortem Surveillance to Quantify the Impact of Coronavirus Disease 2019 in Africa.

Published in:

Clinical Infectious Diseases, 2023, v. 76, n. 3, p. 424, doi. 10.1093/cid/ciac797

By:

Kogan, Nicole E;
Gantt, Shae;
Swerdlow, David;
Viboud, Cécile;
Semakula, Muhammed;
Lipsitch, Marc;
Santillana, Mauricio

Publication type:

Article

Antibiotic Use and Presumptive Pathogens in the Veterans Affairs Healthcare System.

Published in:

Clinical Infectious Diseases, 2022, v. 74, n. 1, p. 105, doi. 10.1093/cid/ciab170

By:

Tedijanto, Christine;
Nevers, McKenna;
Samore, Matthew H;
Lipsitch, Marc

Publication type:

Article

How to Test Severe Acute Respiratory Syndrome Coronavirus 2 Vaccines Ethically Even After One Is Available.

Published in:

Clinical Infectious Diseases, 2021, v. 73, n. 12, p. 2332, doi. 10.1093/cid/ciab182

By:

Eyal, Nir;
Lipsitch, Marc

Publication type:

Article

Leveraging Vaccines to Reduce Antibiotic Use and Prevent Antimicrobial Resistance: A World Health Organization Action Framework.

Published in:

Clinical Infectious Diseases, 2021, v. 73, n. 4, p. e1011, doi. 10.1093/cid/ciab062

By:

Vekemans, Johan;
Hasso-Agopsowicz, Mateusz;
Kang, Gagandeep;
Hausdorff, William P;
Fiore, Anthony;
Tayler, Elizabeth;
Klemm, Elizabeth J;
Laxminarayan, Ramanan;
Srikantiah, Padmini;
Friede, Martin;
Lipsitch, Marc

Publication type:

Article

Depletion-of-susceptibles Bias in Analyses of Intra-season Waning of Influenza Vaccine Effectiveness.

Published in:

Clinical Infectious Diseases, 2020, v. 70, n. 7, p. 1484, doi. 10.1093/cid/ciz706

By:

Ray, G Thomas;
Lewis, Ned;
Klein, Nicola P;
Daley, Matthew F;
Lipsitch, Marc;
Fireman, Bruce

Publication type:

Article

Antibiotic prescribing across age groups in the Kaiser Permanente Northern California population in association with different diagnoses, and with influenza incidence, 2010–2018.

Published in:

Epidemiology & Infection, 2022, v. 150, p. 1, doi. 10.1017/S0950268822000371

By:

Goldstein, Edward;
Fireman, Bruce H.;
Klein, Nicola P.;
Lipsitch, Marc;
Ray, G. Thomas

Publication type:

Article

Reduced Effectiveness of Repeat Influenza Vaccination: Distinguishing Among Within-Season Waning, Recent Clinical Infection, and Subclinical Infection.

Published in:

Journal of Infectious Diseases, 2024, v. 230, n. 6, p. 1309, doi. 10.1093/infdis/jiae220

By:

Bi, Qifang;
Dickerman, Barbra A;
Nguyen, Huong Q;
Martin, Emily T;
Gaglani, Manjusha;
Wernli, Karen J;
Balasubramani, G K;
Flannery, Brendan;
Lipsitch, Marc;
Cobey, Sarah;
Investigators, the US Flu Vaccine Effectiveness Network

Publication type:

Article

Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection.

Published in:

Nature Genetics, 2011, v. 43, n. 5, p. 482, doi. 10.1038/ng.811

By:

Ford, Christopher B.;
Lin, Philana Ling;
Chase, Michael R.;
Shah, Rupal R.;
Iartchouk, Oleg;
Galagan, James;
Mohaideen, Nilofar;
Ioerger, Thomas R.;
Sacchettini, James C.;
Lipsitch, Marc;
Flynn, JoAnne L.;
Fortune, Sarah M.

Publication type:

Article

Selective and Genetic Constraints on Pneumococcal Serotype Switching.

Published in:

PLoS Genetics, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pgen.1005095

By:

Croucher, Nicholas J.;
Kagedan, Lisa;
Thompson, Claudette M.;
Parkhill, Julian;
Bentley, Stephen D.;
Finkelstein, Jonathan A.;
Lipsitch, Marc;
Hanage, William P.

Publication type:

Article

Predicting antibody kinetics and duration of protection against SARS-CoV-2 following vaccination from sparse serological data.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 6, p. 1, doi. 10.1371/journal.pcbi.1013192

By:

Deichmann, Julia;
Barda, Noam;
Canetti, Michal;
Peretz, Yovel;
Weiss-Ottolenghi, Yael;
Lustig, Yaniv;
Regev-Yochay, Gili;
Lipsitch, Marc

Publication type:

Article

Ethical Alternatives to Experiments with Novel Potential Pandemic Pathogens.

Published in:

PLoS Medicine, 2014, v. 11, n. 5, p. 1, doi. 10.1371/journal.pmed.1001646

By:

Lipsitch, Marc;
Galvani, Alison P.

Publication type:

Article

Predicting the Epidemic Sizes of Influenza A/H1N1, A/H3N2, and B: A Statistical Method.

Published in:

PLoS Medicine, 2011, v. 8, n. 7, p. 1, doi. 10.1371/journal.pmed.1001051

By:

Goldstein, Edward;
Cobey, Sarah;
Takahashi, Saki;
Miller, Joel C.;
Lipsitch, Marc

Publication type:

Article

Studies Needed to Address Public Health Challenges of the 2009 H1N1 Influenza Pandemic: Insights from Modeling.

Published in:

PLoS Medicine, 2010, v. 7, n. 6, p. 1, doi. 10.1371/journal.pmed.1000275

By:

Van Kerkhove, Maria D.;
Asikainen, Tommi;
Becker, Niels G.;
Bjorge, Steven;
Desenclos, Jean-Claude;
dos Santos, Thais;
Fraser, Christophe;
Leung56, Gabriel M.;
Lipsitch, Marc;
Longini Jr., Ira M.;
McBryde, Emma S.;
Roth, Cathy E.;
Shay, David K.;
Smith, Derek J.;
Wallinga, Jacco;
White, Peter J.;
Ferguson, Neil M.;
Riley, Steven

Publication type:

Article

The Severity of Pandemic H1N1 Influenza in the United States, from April to July 2009: A Bayesian Analysis.

Published in:

PLoS Medicine, 2009, v. 6, n. 12, p. 1, doi. 10.1371/journal.pmed.1000207

By:

Presanis, Anne M.;
De Angelis, Daniela;
Hagy, Angela;
Reed, Carrie;
Riley, Steven;
Cooper, Ben S.;
Finelli, Lyn;
Biedrzycki, Paul;
Lipsitch, Marc

Publication type:

Article

Hedging against Antiviral Resistance during the Next Influenza Pandemic Using Small Stockpiles of an Alternative Chemotherapy.

Published in:

PLoS Medicine, 2009, v. 6, n. 5, p. 1, doi. 10.1371/journal.pmed.1000085

By:

Wu, Joseph T.;
Leung, Gabriel M.;
Lipsitch, Marc;
Cooper, Ben S.;
Riley, Steven

Publication type:

Article

Antiviral Resistance and the Control of Pandemic Influenza.

Published in:

PLoS Medicine, 2007, v. 4, n. 1, p. 111, doi. 10.1371/journal.pmed.0040015

By:

Lipsitch, Marc;
Cohen, Ted;
Murray, Megan;
Levin, Bruce R.

Publication type:

Article

Pandemic influenza: risk of multiple introductions and the need to prepare for them.

Published in:

2006

By:

Mills, Christina E.;
Robins, James M.;
Bergstrom, Carl T.;
Lipsitch, Marc

Publication type:

journal article

Learning From COVID-19 to Improve Surveillance for Emerging Threats.

Published in:

American Journal of Public Health, 2023, v. 113, n. 5, p. 520, doi. 10.2105/ajph.2023.307261

By:

Jernigan, Daniel B.;
George, Dylan;
Lipsitch, Marc

Publication type:

Article

Estimating the hospitalization burden associated with influenza and respiratory syncytial virus in New York City, 2003-2011.

Published in:

Influenza & Other Respiratory Viruses, 2015, v. 9, n. 5, p. 225, doi. 10.1111/irv.12325

By:

Goldstein, Edward;
Greene, Sharon K.;
Olson, Donald R.;
Hanage, William P.;
Lipsitch, Marc

Publication type:

Article

Pre-dispensing of antivirals to high-risk individuals in an influenza pandemic.

Published in:

Influenza & Other Respiratory Viruses, 2010, v. 4, n. 2, p. 101, doi. 10.1111/j.1750-2659.2009.00128.x

By:

Goldstein, Edward;
Miller, Joel C.;
O'Hagan, Justin J.;
Lipsitch, Marc

Publication type:

Article

Estimation of the reproductive number and the serial interval in early phase of the 2009 influenza A/H1N1 pandemic in the USA.

Published in:

Influenza & Other Respiratory Viruses, 2009, v. 3, n. 6, p. 267, doi. 10.1111/j.1750-2659.2009.00106.x

By:

White, Laura Forsberg;
Wallinga, Jacco;
Finelli, Lyn;
Reed, Carrie;
Riley, Steven;
Lipsitch, Marc;
Paganog, Marcello

Publication type:

Article

EXAMINING BIAS FROM DIFFERENTIAL DEPLETION OF SUSCEPTIBLES IN VACCINE EFFECTIVENESS ESTIMATES IN SETTINGS OF WANING.

Published in:

American Journal of Epidemiology, 2024, v. 193, n. 1, p. 232, doi. 10.1093/aje/kwad191

By:

Kahn, Rebecca;
Feikin, Daniel R;
Wiegand, Ryan E;
Lipsitch, Marc

Publication type:

Article

Identifying and Alleviating Bias Due to Differential Depletion of Susceptible People in Postmarketing Evaluations of COVID-19 Vaccines.

Published in:

American Journal of Epidemiology, 2022, v. 191, n. 5, p. 800, doi. 10.1093/aje/kwac015

By:

Kahn, Rebecca;
Schrag, Stephanie J;
Verani, Jennifer R;
Lipsitch, Marc

Publication type:

Article

Potential Biases Arising From Epidemic Dynamics in Observational Seroprotection Studies.

Published in:

American Journal of Epidemiology, 2021, v. 190, n. 2, p. 328, doi. 10.1093/aje/kwaa188

By:

Kahn, Rebecca;
Kennedy-Shaffer, Lee;
Grad, Yonatan H;
Robins, James M;
Lipsitch, Marc

Publication type:

Article

Statistical Properties of Stepped Wedge Cluster-Randomized Trials in Infectious Disease Outbreaks.

Published in:

American Journal of Epidemiology, 2020, v. 189, n. 11, p. 1324, doi. 10.1093/aje/kwaa141

By:

Kennedy-Shaffer, Lee;
Lipsitch, Marc

Publication type:

Article