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- Title
PubTator: a web-based text mining tool for assisting biocuration.
- Authors
Wei, Chih-Hsuan; Kao, Hung-Yu; Lu, Zhiyong
- Abstract
Manually curating knowledge from biomedical literature into structured databases is highly expensive and time-consuming, making it difficult to keep pace with the rapid growth of the literature. There is therefore a pressing need to assist biocuration with automated text mining tools. Here, we describe PubTator, a web-based system for assisting biocuration. PubTator is different from the few existing tools by featuring a PubMed-like interface, which many biocurators find familiar, and being equipped with multiple challenge-winning text mining algorithms to ensure the quality of its automatic results. Through a formal evaluation with two external user groups, PubTator was shown to be capable of improving both the efficiency and accuracy of manual curation. PubTator is publicly available at http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator/.
- Publication
Nucleic acids research, 2013, Vol 41, Issue Web Server issue, pW518
- ISSN
1362-4962
- Publication type
Journal Article
- DOI
10.1093/nar/gkt441