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- Title
ENCODE whole-genome data in the UCSC Genome Browser: update 2012.
- Authors
Rosenbloom, Kate R; Dreszer, Timothy R; Long, Jeffrey C; Malladi, Venkat S; Sloan, Cricket A; Raney, Brian J; Cline, Melissa S; Karolchik, Donna; Barber, Galt P; Clawson, Hiram; Diekhans, Mark; Fujita, Pauline A; Goldman, Mary; Gravell, Robert C; Harte, Rachel A; Hinrichs, Angie S; Kirkup, Vanessa M; Kuhn, Robert M; Learned, Katrina; Maddren, Morgan; Meyer, Laurence R; Pohl, Andy; Rhead, Brooke; Wong, Matthew C; Zweig, Ann S; Haussler, David; Kent, W James
- Abstract
The Encyclopedia of DNA Elements (ENCODE) Consortium is entering its 5th year of production-level effort generating high-quality whole-genome functional annotations of the human genome. The past year has brought the ENCODE compendium of functional elements to critical mass, with a diverse set of 27 biochemical assays now covering 200 distinct human cell types. Within the mouse genome, which has been under study by ENCODE groups for the past 2 years, 37 cell types have been assayed. Over 2000 individual experiments have been completed and submitted to the Data Coordination Center for public use. UCSC makes this data available on the quality-reviewed public Genome Browser (http://genome.ucsc.edu) and on an early-access Preview Browser (http://genome-preview.ucsc.edu). Visual browsing, data mining and download of raw and processed data files are all supported. An ENCODE portal (http://encodeproject.org) provides specialized tools and information about the ENCODE data sets.
- Publication
Nucleic acids research, 2012, Vol 40, Issue Database issue, pD912
- ISSN
1362-4962
- Publication type
Journal Article
- DOI
10.1093/nar/gkr1012