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- Title
AthaMap, integrating transcriptional and post-transcriptional data.
- Authors
Bülow, Lorenz; Engelmann, Stefan; Schindler, Martin; Hehl, Reinhard
- Abstract
The AthaMap database generates a map of predicted transcription factor binding sites (TFBS) for the whole Arabidopsis thaliana genome. AthaMap has now been extended to include data on post-transcriptional regulation. A total of 403,173 genomic positions of small RNAs have been mapped in the A. thaliana genome. These identify 5772 putative post-transcriptionally regulated target genes. AthaMap tools have been modified to improve the identification of common TFBS in co-regulated genes by subtracting post-transcriptionally regulated genes from such analyses. Furthermore, AthaMap was updated to the TAIR7 genome annotation, a graphic display of gene analysis results was implemented, and the TFBS data content was increased. AthaMap is freely available at http://www.athamap.de/.
- Publication
Nucleic acids research, 2009, Vol 37, Issue Database issue, pD983
- ISSN
1362-4962
- Publication type
Journal Article
- DOI
10.1093/nar/gkn709