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- Title
PepCyber:P~PEP: a database of human protein protein interactions mediated by phosphoprotein-binding domains.
- Authors
Gong, Wuming; Zhou, Dihan; Ren, Yongliang; Wang, Yejun; Zuo, Zhixiang; Shen, Yanping; Xiao, Feifei; Zhu, Qi; Hong, Ailing; Zhou, Xiaochuan; Gao, Xiaolian; Li, Tongbin
- Abstract
Phosphoprotein-binding domains (PPBDs) mediate many important cellular and molecular processes. Ten PPBDs have been known to exist in the human proteome, namely, 14-3-3, BRCT, C2, FHA, MH2, PBD, PTB, SH2, WD-40 and WW. PepCyber:P approximately PEP is a newly constructed database specialized in documenting human PPBD-containing proteins and PPBD-mediated interactions. Our motivation is to provide the research community with a rich information source emphasizing the reported, experimentally validated data for specific PPBD-PPEP interactions. This information is not only useful for designing, comparing and validating the relevant experiments, but it also serves as a knowledge-base for computationally constructing systems signaling pathways and networks. PepCyber:P approximately PEP is accessible through the URL, http://www.pepcyber.org/PPEP/. The current release of the database contains 7044 PPBD-mediated interactions involving 337 PPBD-containing proteins and 1123 substrate proteins.
- Publication
Nucleic acids research, 2008, Vol 36, Issue Database issue, pD679
- ISSN
1362-4962
- Publication type
Journal Article
- DOI
10.1093/nar/gkm854