We found a match
Your institution may have access to this item. Find your institution then sign in to continue.
- Title
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes.
- Authors
Conde, Lucía; Vaquerizas, Juan M; Dopazo, Hernán; Arbiza, Leonardo; Reumers, Joke; Rousseau, Frederic; Schymkowitz, Joost; Dopazo, Joaquín
- Abstract
We have developed a web tool, PupaSuite, for the selection of single nucleotide polymorphisms (SNPs) with potential phenotypic effect, specifically oriented to help in the design of large-scale genotyping projects. PupaSuite uses a collection of data on SNPs from heterogeneous sources and a large number of pre-calculated predictions to offer a flexible and intuitive interface for selecting an optimal set of SNPs. It improves the functionality of PupaSNP and PupasView programs and implements new facilities such as the analysis of user's data to derive haplotypes with functional information. A new estimator of putative effect of polymorphisms has been included that uses evolutionary information. Also SNPeffect database predictions have been included. The PupaSuite web interface is accessible through http://pupasuite.bioinfo.cipf.es and through http://www.pupasnp.org.
- Publication
Nucleic acids research, 2006, Vol 34, Issue Web Server issue, pW621
- ISSN
1362-4962
- Publication type
Journal Article
- DOI
10.1093/nar/gkl071