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- Title
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema.
- Authors
Deshpande, Nita; Addess, Kenneth J; Bluhm, Wolfgang F; Merino-Ott, Jeffrey C; Townsend-Merino, Wayne; Zhang, Qing; Knezevich, Charlie; Xie, Lie; Chen, Li; Feng, Zukang; Green, Rachel Kramer; Flippen-Anderson, Judith L; Westbrook, John; Berman, Helen M; Bourne, Philip E
- Abstract
The Protein Data Bank (PDB) is the central worldwide repository for three-dimensional (3D) structure data of biological macromolecules. The Research Collaboratory for Structural Bioinformatics (RCSB) has completely redesigned its resource for the distribution and query of 3D structure data. The re-engineered site is currently in public beta test at http://pdbbeta.rcsb.org. The new site expands the functionality of the existing site by providing structure data in greater detail and uniformity, improved query and enhanced analysis tools. A new key feature is the integration and searchability of data from over 20 other sources covering genomic, proteomic and disease relationships. The current capabilities of the re-engineered site, which will become the RCSB production site at http://www.pdb.org in late 2005, are described.
- Publication
Nucleic acids research, 2005, Vol 33, Issue Database issue, pD233
- ISSN
1362-4962
- Publication type
Journal Article
- DOI
10.1093/nar/gki057