Works matching AU LaBella, Abigail L

Results: 15

Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage.

Published in:

Molecular Systems Biology, 2025, v. 21, n. 8, p. 1066, doi. 10.1038/s44320-025-00118-0

By:

Feng, Bo;
Li, Yonglin;
Xu, Biyang;
Liu, Hongyue;
Steenwyk, Jacob L;
David, Kyle T;
Tian, Xiaolin;
Gonçalves, Carla;
Opulente, Dana A;
LaBella, Abigail L;
Harrison, Marie-Claire;
Wolters, John F;
Shao, Shengyuan;
Chen, Zhaohao;
Fisher, Kaitlin J;
Groenewald, Marizeth;
Hittinger, Chris Todd;
Shen, Xing-Xing;
Li, Shengying;
Rokas, Antonis

Publication type:

Article

PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data.

Published in:

Bioinformatics, 2021, v. 37, n. 16, p. 2325, doi. 10.1093/bioinformatics/btab096

By:

Steenwyk, Jacob L;
Buida, Thomas J;
Labella, Abigail L;
Li, Yuanning;
Shen, Xing-Xing;
Rokas, Antonis

Publication type:

Article

Genome-wide analyses of neonatal jaundice reveal a marked departure from adult bilirubin metabolism.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-51947-w

By:

Solé-Navais, Pol;
Juodakis, Julius;
Ytterberg, Karin;
Wu, Xiaoping;
Bradfield, Jonathan P.;
Vaudel, Marc;
LaBella, Abigail L.;
Helgeland, Øyvind;
Flatley, Christopher;
Geller, Frank;
Finel, Moshe;
Zhao, Mengqi;
Lazarus, Philip;
Hakonarson, Hakon;
Magnus, Per;
Andreassen, Ole A.;
Njølstad, Pål R.;
Grant, Struan F. A.;
Feenstra, Bjarke;
Muglia, Louis J.

Publication type:

Article

The Impact of Natural Selection on the Evolution and Function of Placentally Expressed Galectins.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 9, p. 2574, doi. 10.1093/gbe/evz183

By:

Ely, Zackery A;
Moon, Jiyun M;
Sliwoski, Gregory R;
Sangha, Amandeep K;
Shen, Xing-Xing;
Labella, Abigail L;
Meiler, Jens;
Capra, John A;
Rokas, Antonis

Publication type:

Article

Mosaic patterns of selection in genomic regions associated with diverse human traits.

Published in:

PLoS Genetics, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pgen.1010494

By:

Abraham, Abin;
LaBella, Abigail L.;
Capra, John A.;
Rokas, Antonis

Publication type:

Article

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts.

Published in:

PLoS Biology, 2019, v. 17, n. 5, p. 1, doi. 10.1371/journal.pbio.3000255

By:

Steenwyk, Jacob L.;
Opulente, Dana A.;
Kominek, Jacek;
Shen, Xing-Xing;
Zhou, Xiaofan;
Labella, Abigail L.;
Bradley, Noah P.;
Eichman, Brandt F.;
Čadež, Neža;
Libkind, Diego;
DeVirgilio, Jeremy;
Hulfachor, Amanda Beth;
Kurtzman, Cletus P.;
Hittinger, Chris Todd;
Rokas, Antonis

Publication type:

Article

Variation and selection on codon usage bias across an entire subphylum.

Published in:

PLoS Genetics, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pgen.1008304

By:

Labella, Abigail L.;
Opulente, Dana A.;
Steenwyk, Jacob L.;
Hittinger, Chris Todd;
Rokas, Antonis

Publication type:

Article

Disease‐causing mutations in the promoter and enhancer of the ornithine transcarbamylase gene.

Published in:

Human Mutation, 2018, v. 39, n. 4, p. 527, doi. 10.1002/humu.23394

By:

Jang, Yoon J.;
LaBella, Abigail L.;
Feeney, Timothy P.;
Braverman, Nancy;
Tuchman, Mendel;
Morizono, Hiroki;
Ah Mew, Nicholas;
Caldovic, Ljubica

Publication type:

Article

Mitochondrial genome diversity across the subphylum Saccharomycotina.

Published in:

Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1268944

By:

Wolters, John F.;
LaBella, Abigail L.;
Opulente, Dana A.;
Rokas, Antonis;
Hittinger, Chris Todd

Publication type:

Article

Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17258-6

By:

LaBella, Abigail L.;
Abraham, Abin;
Pichkar, Yakov;
Fong, Sarah L.;
Zhang, Ge;
Muglia, Louis J.;
Abbot, Patrick;
Rokas, Antonis;
Capra, John A.

Publication type:

Article

Diverse signatures of convergent evolution in cactus-associated yeasts.

Published in:

PLoS Biology, 2024, v. 22, n. 9, p. 1, doi. 10.1371/journal.pbio.3002832

By:

Gonçalves, Carla;
Harrison, Marie-Claire;
Steenwyk, Jacob L.;
Opulente, Dana A.;
LaBella, Abigail L.;
Wolters, John F.;
Zhou, Xiaofan;
Shen, Xing-Xing;
Groenewald, Marizeth;
Hittinger, Chris Todd;
Rokas, Antonis

Publication type:

Article

Evolution and codon usage bias of mitochondrial and nuclear genomes in Aspergillus section Flavi.

Published in:

G3: Genes | Genomes | Genetics, 2023, v. 13, n. 1, p. 1, doi. 10.1093/g3journal/jkac285

By:

Hugaboom, Miya;
Hatmaker, Elizabeth Anne;
LaBella, Abigail L.;
Rokas, Antonis

Publication type:

Article

BioKIT: a versatile toolkit for processing and analyzing diverse types of sequence data.

Published in:

Genetics, 2022, v. 221, n. 3, p. 1, doi. 10.1093/genetics/iyac079

By:

Steenwyk, Jacob L.;
Buida III, Thomas J.;
Gonçalves, Carla;
Goltz, Dayna C.;
Morales, Grace;
Mead, Matthew E.;
LaBella, Abigail L.;
Chavez, Christina M.;
Schmitz, Jonathan E.;
Hadjifrangiskou, Maria;
Yuanning Li;
Rokas, Antonis

Publication type:

Article

Repeated horizontal gene transfer of GALactose metabolism genes violates Dollo's law of irreversible loss.

Published in:

Genetics, 2021, v. 217, n. 2, p. 1, doi. 10.1093/genetics/iyaa012

By:

Haase, Max A. B.;
Kominek, Jacek;
Opulente, Dana A.;
Shen, Xing-Xing;
LaBella, Abigail L.;
Zhou, Xiaofan;
DeVirgilio, Jeremy;
Hulfachor, Amanda Beth;
Kurtzman, Cletus P.;
Rokas, Antonis;
Hittinger, Chris Todd

Publication type:

Article

Correction: Variation and selection on codon usage bias across an entire subphylum.

Published in:

2021

By:

LaBella, Abigail L.;
Opulente, Dana A.;
Steenwyk, Jacob L.;
Hittinger, Chris Todd;
Rokas, Antonis

Publication type:

Correction Notice