Works matching DE "FALSE discovery rate"

Results: 2528

Analysis of multiple bacterial species and antibiotic classes reveals large variation in the association between seasonal antibiotic use and resistance.

Published in:

PLoS Biology, 2022, v. 20, n. 3, p. 1, doi. 10.1371/journal.pbio.3001579

By:

Sun, Daphne S.;
Kissler, Stephen M.;
Kanjilal, Sanjat;
Olesen, Scott W.;
Lipsitch, Marc;
Grad, Yonatan H.

Publication type:

Article

Subjective sleep assessments are correlated with EEG-related sleep measurements of the first sleep cycle in healthy young adults.

Published in:

Sleep & Biological Rhythms, 2023, v. 21, n. 2, p. 211, doi. 10.1007/s41105-022-00437-x

By:

Shirota, Ai;
Kamimura, Mayo;
Katagiri, Ayano;
Taniike, Masako;
Kato, Takafumi

Publication type:

Article

Imaging predictors of 4q12 amplified and RB1 mutated glioblastoma IDH-wildtype.

Published in:

Journal of Neuro-Oncology, 2024, v. 167, n. 1, p. 99, doi. 10.1007/s11060-024-04575-9

By:

Dono, Antonio;
Torres, Jose;
Nunez, Luis;
Arevalo, Octavio;
Rodriguez-Quinteros, Juan Carlos;
Riascos, Roy F.;
Kamali, Arash;
Tandon, Nitin;
Ballester, Leomar Y.;
Esquenazi, Yoshua

Publication type:

Article

DCE-MRI perfusion predicts pseudoprogression in metastatic melanoma treated with immunotherapy.

Published in:

Journal of Neuro-Oncology, 2020, v. 146, n. 2, p. 339, doi. 10.1007/s11060-019-03379-6

By:

Umemura, Yoshie;
Wang, Diane;
Peck, Kyung K.;
Flynn, Jessica;
Zhang, Zhigang;
Fatovic, Robin;
Anderson, Erik S.;
Beal, Kathryn;
Shoushtari, Alexander N.;
Kaley, Thomas;
Young, Robert J.

Publication type:

Article

Association mapping of oil content and fatty acid components in soybean.

Published in:

Euphytica, 2015, v. 203, n. 1, p. 83, doi. 10.1007/s10681-014-1264-4

By:

Priolli, R.;
Campos, J.;
Stabellini, N.;
Pinheiro, J.;
Vello, N.

Publication type:

Article

Fast network discovery on sequence data via time-aware hashing.

Published in:

Knowledge & Information Systems, 2019, v. 61, n. 2, p. 987, doi. 10.1007/s10115-018-1293-8

By:

Safavi, Tara;
Sripada, Chandra;
Koutra, Danai

Publication type:

Article

Differential protein input in the maternal diet alters the skeletal muscle transcriptome in fetal sheep.

Published in:

Mammalian Genome, 2020, v. 31, n. 9-12, p. 309, doi. 10.1007/s00335-020-09851-3

By:

Sohel, Md Mahmodul Hasan;
Akyuz, Bilal;
Konca, Yusuf;
Arslan, Korhan;
Gurbulak, Kutlay;
Abay, Murat;
Kaliber, Mahmut;
Cinar, Mehmet Ulas

Publication type:

Article

Reply letter to: False discovery rate in laser studies.

Published in:

World Journal of Urology, 2023, v. 41, n. 7, p. 1995, doi. 10.1007/s00345-023-04457-1

By:

Corrales, Mariela;
Panthier, Frédéric;
Solano, Catalina;
Ventimiglia, Eugenio;
Traxer, Olivier

Publication type:

Article

False discovery rate in laser studies.

Published in:

World Journal of Urology, 2023, v. 41, n. 6, p. 1707, doi. 10.1007/s00345-023-04401-3

By:

Nguyen, Dong

Publication type:

Article

Can alternative liver function scores facilitate the establishment of an indication for radioablative therapy in patients with hepatocellular carcinoma?

Published in:

Journal of Cancer Research & Clinical Oncology, 2023, v. 149, n. 8, p. 4817, doi. 10.1007/s00432-022-04411-5

By:

Ott, Dominik;
Gawish, Ahmed;
Lux, Anke;
Heinze, Constanze;
Brunner, Thomas B.;
Hass, Peter

Publication type:

Article

The Need for Community Standards to Enable Accurate Comparison of Glycoproteomics Algorithm Performance.

Published in:

Molecules, 2021, v. 26, n. 16, p. 4757, doi. 10.3390/molecules26164757

By:

Hackett, William E.;
Zaia, Joseph

Publication type:

Article

Proteomic Profiling of Emiliania huxleyi Using a Three-Dimensional Separation Method Combined with Tandem Mass Spectrometry.

Published in:

Molecules, 2020, v. 25, n. 13, p. 3028, doi. 10.3390/molecules25133028

By:

Yun, Goyeun;
Park, Jong-Moon;
Duong, Van-An;
Mok, Jeong-Hun;
Jeon, Jongho;
Nam, Onyou;
Lee, Joonwon;
Jin, EonSeon;
Lee, Hookeun

Publication type:

Article

Role of immune cells in seborrheic dermatitis: a two-sample bidirectional Mendelian randomization study.

Published in:

Archives of Dermatological Research, 2025, v. 317, n. 1, p. 1, doi. 10.1007/s00403-025-04028-x

By:

Xian, Qinan;
Zhou, Juan;
Li, Xin;
Xu, Yiwen;
Sun, Yan

Publication type:

Article

Exploring the association between skin microbiota and inflammatory skin diseases: a two-sample Mendelian randomization analysis.

Published in:

Archives of Dermatological Research, 2024, v. 316, n. 10, p. 1, doi. 10.1007/s00403-024-03433-y

By:

Pan, Lingfeng;
Li, Caihong;
Liang, Zhuoshuai;
Shi, Jikang

Publication type:

Article

Tracking biomedical articles along the translational continuum: a measure based on biomedical knowledge representation.

Published in:

Scientometrics, 2023, v. 128, n. 2, p. 1295, doi. 10.1007/s11192-022-04607-z

By:

Li, Xin;
Tang, Xuli;
Lu, Wei

Publication type:

Article

Expression quantitative trait loci in sheep liver and muscle contribute to variations in meat traits.

Published in:

Genetics Selection Evolution, 2021, v. 53, n. 1, p. 1, doi. 10.1186/s12711-021-00602-9

By:

Yuan, Zehu;
Sunduimijid, Bolormaa;
Xiang, Ruidong;
Behrendt, Ralph;
Knight, Matthew I.;
Mason, Brett A.;
Reich, Coralie M.;
Prowse-Wilkins, Claire;
Vander Jagt, Christy J.;
Chamberlain, Amanda J.;
MacLeod, Iona M.;
Li, Fadi;
Yue, Xiangpeng;
Daetwyler, Hans D.

Publication type:

Article

Detection of genomic regions underlying resistance to gastrointestinal parasites in Australian sheep.

Published in:

Genetics Selection Evolution, 2019, v. 51, n. 1, p. N.PAG, doi. 10.1186/s12711-019-0479-1

By:

Al Kalaldeh, Mohammad;
Gibson, John;
Lee, Sang Hong;
Gondro, Cedric;
van der Werf, Julius H. J.

Publication type:

Article

Powerful and interpretable control of false discoveries in two-group differential expression studies.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5214, doi. 10.1093/bioinformatics/btac693

By:

Enjalbert-Courrech, Nicolas;
Neuvial, Pierre

Publication type:

Article

CoxMKF: a knockoff filter for high-dimensional mediation analysis with a survival outcome in epigenetic studies.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5229, doi. 10.1093/bioinformatics/btac687

By:

Tian, Peixin;
Yao, Minhao;
Huang, Tao;
Liu, Zhonghua

Publication type:

Article

CEDA: integrating gene expression data with CRISPR-pooled screen data identifies essential genes with higher expression.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5245, doi. 10.1093/bioinformatics/btac668

By:

Zhao, Yue;
Yu, Lianbo;
Wu, Xue;
Li, Haoran;
Coombes, Kevin R;
Au, Kin Fai;
Cheng, Lijun;
Li, Lang

Publication type:

Article

Group-walk: a rigorous approach to group-wise false discovery rate analysis by target-decoy competition.

Published in:

Bioinformatics, 2022, v. 38, p. ii82, doi. 10.1093/bioinformatics/btac471

By:

Freestone, Jack;
Short, Temana;
Keich, Uri

Publication type:

Article

Efficient permutation-based genome-wide association studies for normal and skewed phenotypic distributions.

Published in:

Bioinformatics, 2022, v. 38, p. ii5, doi. 10.1093/bioinformatics/btac455

By:

John, Maura;
Ankenbrand, Markus J;
Artmann, Carolin;
Freudenthal, Jan A;
Korte, Arthur;
Grimm, Dominik G

Publication type:

Article

High-sensitivity pattern discovery in large, paired multiomic datasets.

Published in:

Bioinformatics, 2022, v. 38, p. i378, doi. 10.1093/bioinformatics/btac232

By:

Ghazi, Andrew R;
Sucipto, Kathleen;
Rahnavard, Ali;
Franzosa, Eric A;
McIver, Lauren J;
Lloyd-Price, Jason;
Schwager, Emma;
Weingart, George;
Moon, Yo Sup;
Morgan, Xochitl C;
Waldron, Levi;
Huttenhower, Curtis

Publication type:

Article

new approach to testing mediation of the microbiome at both the community and individual taxon levels.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3173, doi. 10.1093/bioinformatics/btac310

By:

Yue, Ye;
Hu, Yi-Juan

Publication type:

Article

Deephos: predicted spectral database search for TMT-labeled phosphopeptides and its false discovery rate estimation.

Published in:

Bioinformatics, 2022, v. 38, n. 11, p. 2980, doi. 10.1093/bioinformatics/btac280

By:

Na, Seungjin;
Choi, Hyunjin;
Paek, Eunok

Publication type:

Article

CNGPLD: case–control copy-number analysis using Gaussian process latent difference.

Published in:

Bioinformatics, 2022, v. 38, n. 8, p. 2096, doi. 10.1093/bioinformatics/btac096

By:

Shih, David J H;
Li, Ruoxing;
Müller, Peter;
Zheng, W Jim;
Do, Kim-Anh;
Lin, Shiaw-Yih;
Carter, Scott L

Publication type:

Article

fastANCOM: a fast method for analysis of compositions of microbiomes.

Published in:

Bioinformatics, 2022, v. 38, n. 7, p. 2039, doi. 10.1093/bioinformatics/btac060

By:

Zhou, Chao;
Wang, Huimin;
Zhao, Hongyu;
Wang, Tao

Publication type:

Article

Alpha-Tri: a deep neural network for scoring the similarity between predicted and measured spectra improves peptide identification of DIA data.

Published in:

Bioinformatics, 2022, v. 38, n. 6, p. 1525, doi. 10.1093/bioinformatics/btab878

By:

Song, Jian;
Yu, Changbin

Publication type:

Article

Overcoming the inadaptability of sparse group lasso for data with various group structures by stacking.

Published in:

Bioinformatics, 2022, v. 38, n. 6, p. 1542, doi. 10.1093/bioinformatics/btab848

By:

He, Huan;
Guo, Xinyun;
Yu, Jialin;
Ai, Chen;
Shi, Shaoping

Publication type:

Article

power of word-frequency-based alignment-free functions: a comprehensive large-scale experimental analysis.

Published in:

Bioinformatics, 2022, v. 38, n. 4, p. 925, doi. 10.1093/bioinformatics/btab747

By:

Cattaneo, Giuseppe;
Petrillo, Umberto Ferraro;
Giancarlo, Raffaele;
Palini, Francesco;
Romualdi, Chiara

Publication type:

Article

FindNonCoding: rapid and simple detection of non-coding RNAs in genomes.

Published in:

Bioinformatics, 2022, v. 38, n. 3, p. 841, doi. 10.1093/bioinformatics/btab708

By:

Wright, Erik S

Publication type:

Article

Querying multiple sets of P-values through composed hypothesis testing.

Published in:

Bioinformatics, 2022, v. 38, n. 1, p. 141, doi. 10.1093/bioinformatics/btab592

By:

Mary-Huard, Tristan;
Das, Sarmistha;
Mukhopadhyay, Indranil;
Robin, Stéphane

Publication type:

Article

Alpha-XIC: a deep neural network for scoring the coelution of peak groups improves peptide identification by data-independent acquisition mass spectrometry.

Published in:

Bioinformatics, 2022, v. 38, n. 1, p. 38, doi. 10.1093/bioinformatics/btab544

By:

Song, Jian;
Yu, Changbin

Publication type:

Article

Transformation and differential abundance analysis of microbiome data incorporating phylogeny.

Published in:

Bioinformatics, 2021, v. 37, n. 24, p. 4652, doi. 10.1093/bioinformatics/btab543

By:

Zhou, Chao;
Zhao, Hongyu;
Wang, Tao

Publication type:

Article

Mediation analysis for survival data with high-dimensional mediators.

Published in:

Bioinformatics, 2021, v. 37, n. 21, p. 3815, doi. 10.1093/bioinformatics/btab564

By:

Zhang, Haixiang;
Zheng, Yinan;
Hou, Lifang;
Zheng, Cheng;
Liu, Lei

Publication type:

Article

LipiDisease: associate lipids to diseases using literature mining.

Published in:

Bioinformatics, 2021, v. 37, n. 21, p. 3981, doi. 10.1093/bioinformatics/btab559

By:

More, Piyush;
Bindila, Laura;
Wild, Philipp;
Andrade-Navarro, Miguel;
Fontaine, Jean-Fred

Publication type:

Article

MHCVision: estimation of global and local false discovery rate for MHC class I peptide binding prediction.

Published in:

Bioinformatics, 2021, v. 37, n. 21, p. 3830, doi. 10.1093/bioinformatics/btab479

By:

Pearngam, Phorutai;
Sriswasdi, Sira;
Pisitkun, Trairak;
Jones, Andrew R

Publication type:

Article

VIRUSBreakend: Viral Integration Recognition Using Single Breakends.

Published in:

Bioinformatics, 2021, v. 37, n. 19, p. 3115, doi. 10.1093/bioinformatics/btab343

By:

Cameron, Daniel L;
Jacobs, Nina;
Roepman, Paul;
Priestley, Peter;
Cuppen, Edwin;
Papenfuss, Anthony T

Publication type:

Article

Differential gene expression analysis for multi-subject single-cell RNA-sequencing studies with aggregateBioVar.

Published in:

Bioinformatics, 2021, v. 37, n. 19, p. 3243, doi. 10.1093/bioinformatics/btab337

By:

Thurman, Andrew L;
Ratcliff, Jason A;
Chimenti, Michael S;
Pezzulo, Alejandro A

Publication type:

Article

MixTwice: large-scale hypothesis testing for peptide arrays by variance mixing.

Published in:

Bioinformatics, 2021, v. 37, n. 17, p. 2637, doi. 10.1093/bioinformatics/btab162

By:

Zheng, Zihao;
Mergaert, Aisha M.;
Ong, Irene M.;
Shelef, Miriam A.;
Newton, Michael A.

Publication type:

Article

Random rotation for identifying differentially expressed genes with linear models following batch effect correction.

Published in:

Bioinformatics, 2021, v. 37, n. 15, p. 2142, doi. 10.1093/bioinformatics/btab063

By:

Hettegger, Peter;
Vierlinger, Klemens;
Weinhaeusel, Andreas

Publication type:

Article

LipidFinder 2.0: advanced informatics pipeline for lipidomics discovery applications.

Published in:

Bioinformatics, 2021, v. 37, n. 10, p. 1478, doi. 10.1093/bioinformatics/btaa856

By:

Alvarez-Jarreta, Jorge;
Rodrigues, Patricia R S;
Fahy, Eoin;
O'Connor, Anne;
Price, Anna;
Gaud, Caroline;
Andrews, Simon;
Benton, Paul;
Siuzdak, Gary;
Hawksworth, Jade I;
Valdivia-Garcia, Maria;
Allen, Stuart M;
O'Donnell, Valerie B

Publication type:

Article

MEScan: a powerful statistical framework for genome-scale mutual exclusivity analysis of cancer mutations.

Published in:: Bioinformatics, 2021, v. 37, n. 9, p. 1189, doi. 10.1093/bioinformatics/btaa957
Publication type:: Article

Knockoff boosted tree for model-free variable selection.

Published in:

Bioinformatics, 2021, v. 37, n. 7, p. 976, doi. 10.1093/bioinformatics/btaa770

By:

Jiang, Tao;
Li, Yuanyuan;
Motsinger-Reif, Alison A

Publication type:

Article

KIMI: Knockoff Inference for Motif Identification from molecular sequences with controlled false discovery rate.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 759, doi. 10.1093/bioinformatics/btaa912

By:

Bai, Xin;
Ren, Jie;
Fan, Yingying;
Sun, Fengzhu

Publication type:

Article

ipDMR: identification of differentially methylated regions with interval P-values.

Published in:

Bioinformatics, 2021, v. 37, n. 5, p. 711, doi. 10.1093/bioinformatics/btaa732

By:

Xu, Zongli;
Xie, Changchun;
Taylor, Jack A;
Niu, Liang

Publication type:

Article

New mixture models for decoy-free false discovery rate estimation in mass spectrometry proteomics.

Published in:

Bioinformatics, 2020, v. 36, p. i745, doi. 10.1093/bioinformatics/btaa807

By:

Peng, Yisu;
Jain, Shantanu;
Li, Yong Fuga;
Greguš, Michal;
Ivanov, Alexander R.;
Vitek, Olga;
Radivojac, Predrag

Publication type:

Article

IMIX: a multivariate mixture model approach to association analysis through multi-omics data integration.

Published in:

Bioinformatics, 2020, v. 36, n. 22/23, p. 5439, doi. 10.1093/bioinformatics/btaa1001

By:

Wang, Ziqiao;
Wei, Peng

Publication type:

Article

Testing hypotheses about the microbiome using the linear decomposition model (LDM).

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4106, doi. 10.1093/bioinformatics/btaa260

By:

Hu, Yi-Juan;
Satten, Glen A

Publication type:

Article

Integrating biological knowledge and gene expression data using pathway-guided random forests: a benchmarking study.

Published in:

Bioinformatics, 2020, v. 36, n. 15, p. 4301, doi. 10.1093/bioinformatics/btaa483

By:

Seifert, Stephan;
Gundlach, Sven;
Junge, Olaf;
Szymczak, Silke

Publication type:

Article