Works matching DE "NUCLEOTIDE analysis"

Results: 974

Solution to DNA Sequencing Challenge.

Published in:

Analytical & Bioanalytical Chemistry, 2006, v. 385, n. 1, p. 8, doi. 10.1007/s00216-006-0357-x

By:

Meija, Juris

Publication type:

Article

Styrene oxide DNA adducts: quantitative determination using<sup>31</sup>P monitoring.

Published in:

Analytical & Bioanalytical Chemistry, 2005, v. 381, n. 1, p. 205, doi. 10.1007/s00216-004-2925-2

By:

Edler, Michael;
Jakubowski, Norbert;
Linscheid, Michael

Publication type:

Article

Nucleotide sequence of plasmid pA387 of Amycolatopsis benzoatilytica and construction of a conjugative shuttle vector.

Published in:

Journal of Basic Microbiology, 2008, v. 48, n. 3, p. 177, doi. 10.1002/jobm.200700326

By:

Malhotra, Shweta;
Majumdar, Swati;
Kumar, Mukesh;
Bhasin, V. K.;
Gartemann, Karl-Heinz;
Lal, Rup

Publication type:

Article

Resolving the database sequence discrepancies for the Staphylococcus aureus bacteriophage φ11 amidase.

Published in:

Journal of Basic Microbiology, 2008, v. 48, n. 1, p. 48, doi. 10.1002/jobm.200700179

By:

Donovan, David M.;
Foster-Frey, Juli;
Garrett, Wesley M.;
Blomberg, LeAnn

Publication type:

Article

Report on mutation in exon 15 of the APC gene in a case of brain metastasis.

Published in:

2010

By:

Pećina-Šlaus, Nives;
Majić, Željka;
Musani, Vesna;
Zeljko, Martina;
Čupić, Hrvoje

Publication type:

Report

Genetic population structure of Lefua echigonia inferred from allozymic and mitochondrial cytochrome b variations.

Published in:

Ichthyological Research, 2003, v. 50, n. 4, p. 301, doi. 10.1007/s10228-003-0172-8

By:

Ryosuke Saka;
Yusuke Takehana;
Naoyuki Suguro;
Mitsuru Sakaizumi

Publication type:

Article

Genetic population structure of Japanese bagrid catfishes.

Published in:

Ichthyological Research, 2003, v. 50, n. 2, p. 140, doi. 10.1007/s10228-002-0149-z

By:

Katsutoshi Watanabe;
Mutsumi Nishida

Publication type:

Article

An SNP panel for the analysis of paternally inherited alleles in maternal plasma using ion Torrent PGM.

Published in:

International Journal of Legal Medicine, 2018, v. 132, n. 2, p. 343, doi. 10.1007/s00414-017-1594-6

By:

Yang, Donggui;
Liang, Hao;
Sun, Hongyu;
Ou, Xueling;
Lin, Shaobin;
Wu, Jianzhu;
Li, Qing;
Ma, Xiaoyan;
Chen, Qingqing;
Gao, Jun

Publication type:

Article

Tri-allelic patterns at the D7S820 locus detected in two generations of a Chinese family.

Published in:

International Journal of Legal Medicine, 2016, v. 130, n. 1, p. 23, doi. 10.1007/s00414-015-1166-6

By:

Jiang, Erlie;
Pan, Jie;
Han, Mingzhe;
Chen, Liang;
Ma, Qiaoling;
Wei, Jialin;
Huang, Yong;
Feng, Sizhou;
Sun, Qin;
Xiao, Peili;
Zheng, Zhongzheng

Publication type:

Article

Reduced-volume and low-volume typing of Y-chromosomal SNPs to obtain Finnish Y-chromosomal compound haplotypes.

Published in:

International Journal of Legal Medicine, 2009, v. 123, n. 5, p. 413, doi. 10.1007/s00414-009-0358-3

By:

Heinrich, Marielle;
Braun, Tina;
Sänger, Timo;
Saukko, Pekka;
Lutz-Bonengel, Sabine;
Schmidt, Ulrike

Publication type:

Article

Population data on the seven short tandem repeat loci D4S2366, D6S474, D14S608, D19S246, D20S480, D21S226 and D22S689 in a German population.

Published in:

International Journal of Legal Medicine, 2007, v. 121, n. 1, p. 78

By:

Dorit Becker;
Dorit Vogelsang;
Werner Brabetz

Publication type:

Article

The nucleotide sequence of a Polish isolate of Tomato torrado virus.

Published in:

Virus Genes, 2008, v. 37, n. 3, p. 400, doi. 10.1007/s11262-008-0284-3

By:

Marta Budziszewska;
Aleksandra Obrepalska-Steplowska;
PrzemysÅaw Wieczorek;
Henryk Pospieszny

Publication type:

Article

Genome characterization and genetic diversity of beet curly top Iran virus: a geminivirus with a novel nonanucleotide.

Published in:

Virus Genes, 2008, v. 36, n. 3, p. 539, doi. 10.1007/s11262-008-0224-2

By:

H. Yazdi;
J. Heydarnejad;
H. Massumi

Publication type:

Article

Phylogenetic analysis of porcine circovirus type 2 (PCV2) pre- and post-epizootic postweaning multisystemic wasting syndrome (PMWS).

Published in:

Virus Genes, 2008, v. 36, n. 3, p. 509, doi. 10.1007/s11262-008-0217-1

By:

Sirje Timmusk;
Inger Brunborg;
Frida Wikström;
Gordon Allan;
Michael McMenamy;
Francis McNeilly;
Lisbeth Fuxler;
Katinka Belák;
Diivi Põdersoo;
Tiiu Saar;
Mikael Berg;
Caroline Fossum

Publication type:

Article

Functional and structural characterisation of Ag MNPV ie1.

Published in:

Virus Genes, 2007, v. 35, n. 3, p. 549, doi. 10.1007/s11262-007-0150-8

By:

Marcos Bilen;
Marcela Pilloff;
Mariano Belaich;
Julio Rodrigues;
Bergmann Ribeiro;
Mario Lozano;
Pablo Ghiringhelli

Publication type:

Article

LiveKraken––real-time metagenomic classification of illumina data.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3750, doi. 10.1093/bioinformatics/bty433

By:

Tausch, Simon H;
Andrusch, Andreas;
Strauch, Benjamin;
Loka, Tobias P;
Lindner, Martin S;
Renard, Bernhard Y;
Nitsche, Andreas

Publication type:

Article

B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle.

Published in:: Bioinformatics, 2018, v. 34, n. 16, p. 2846, doi. 10.1093/bioinformatics/bty203
Publication type:: Article

Enhancing protein fold determination by exploring the complementary information of chemical cross-linking and coevolutionary signals.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. 2201, doi. 10.1093/bioinformatics/bty074

By:

Santos, Ricardo N dos;
Ferrari, Allan J R;
Jesus, Hugo C R de;
Gozzo, Fábio C;
Morcos, Faruck;
Martínez, Leandro

Publication type:

Article

ViCTree: an automated framework for taxonomic classification from protein sequences.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. 2195, doi. 10.1093/bioinformatics/bty099

By:

Modha, Sejal;
Thanki, Anil S;
Cotmore, Susan F;
Davison, Andrew J;
Hughes, Joseph

Publication type:

Article

The lncLocator: a subcellular localization predictor for long non-coding RNAs based on a stacked ensemble classifier.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. 2185, doi. 10.1093/bioinformatics/bty085

By:

Cao, Zhen;
Pan, Xiaoyong;
Yang, Yang;
Huang, Yan;
Shen, Hong-Bin

Publication type:

Article

Hierarchical analysis of RNA-seq reads improves the accuracy of allele-specific expression.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. 2177, doi. 10.1093/bioinformatics/bty078

By:

Raghupathy, Narayanan;
Choi, Kwangbom;
Vincent, Matthew J;
Beane, Glen L;
Sheppard, Keith S;
Munger, Steven C;
Korstanje, Ron;
Villena, Fernando Pardo-Manual de;
Churchill, Gary A

Publication type:

Article

A spectral clustering-based method for identifying clones from high-throughput B cell repertoire sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. i341, doi. 10.1093/bioinformatics/bty235

By:

Nouri, Nima;
Kleinstein, Steven H

Publication type:

Article

Convolutional neural networks for classification of alignments of non-coding RNA sequences.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. i237, doi. 10.1093/bioinformatics/bty228

By:

Aoki, Genta;
Sakakibara, Yasubumi

Publication type:

Article

Dissecting newly transcribed and old RNA using GRAND-SLAM.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. i218, doi. 10.1093/bioinformatics/bty256

By:

Jürges, Christopher;
Dölken, Lars;
Erhard, Florian

Publication type:

Article

Random forest based similarity learning for single cell RNA sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. i79, doi. 10.1093/bioinformatics/bty260

By:

Pouyan, Maziyar Baran;
Kostka, Dennis

Publication type:

Article

aliFreeFold: an alignment-free approach to predict secondary structure from homologous RNA sequences.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. i70, doi. 10.1093/bioinformatics/bty234

By:

Glouzon, Jean-Pierre Séhi;
Ouangraoua, Aïda

Publication type:

Article

Covariate-dependent negative binomial factor analysis of RNA sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. i61, doi. 10.1093/bioinformatics/bty237

By:

Dadaneh, Siamak Zamani;
Zhou, Mingyuan;
Qian, Xiaoning

Publication type:

Article

AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1232, doi. 10.1093/bioinformatics/btx719

By:

Shin, Sunguk;
Lee, Hanna;
Son, Hyeonju;
Paik, Soonmyung;
Kim, Sangwoo

Publication type:

Article

Genotyping inversions and tandem duplications.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4015, doi. 10.1093/bioinformatics/btx020

By:

Ebler, Jana;
Schönhuth, Alexander;
Marschall, Tobias

Publication type:

Article

EUPAN enables pan-genome studies of a large number of eukaryotic genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2408, doi. 10.1093/bioinformatics/btx170

By:

Zhiqiang Hu;
Chen Sun;
Kuang-Chen Lu;
Xixia Chu;
Yue Zhao;
Jinyuan Lu;
Jianxin Shi;
Chaochun Wei

Publication type:

Article

Kart: a divide-and-conquer algorithm for NGS read alignment.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2281, doi. 10.1093/bioinformatics/btx189

By:

Hsin-Nan Lin;
Wen-Lian Hsu

Publication type:

Article

VCNet: vector-based gene co-expression network construction and its application to RNA-seq data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2173, doi. 10.1093/bioinformatics/btx131

By:

Zengmiao Wang;
Huaying Fang;
Leung-Sang Tang, Nelson;
Minghua Deng

Publication type:

Article

LAMSA: fast split read alignment with long approximate matches.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 192, doi. 10.1093/bioinformatics/btw594

By:

Bo Liu;
Yan Gao;
Yadong Wang

Publication type:

Article

PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 177, doi. 10.1093/bioinformatics/btw605

By:

Xi Chen;
Xu Shi;
Hilakivi-Clarke, Leena;
Shajahan-Haq, Ayesha N.;
Clarke, Robert;
Jianhua Xuan

Publication type:

Article

ReliableGenome: annotation of genomic regions with high/low variant calling concordance.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 155, doi. 10.1093/bioinformatics/btw587

By:

Popitsch, Niko;
Schuh, Anna;
Taylor, Jenny C.

Publication type:

Article

Beta-Poisson model for single-cell RNA-seq data analyses.

Published in:

Bioinformatics, 2016, v. 32, n. 14, p. 2128, doi. 10.1093/bioinformatics/btw202

By:

Vu, Trung Nghia;
Wills, Quin F.;
Kalari, Krishna R.;
Nifang Niu;
Liewei Wang;
Rantalainen, Mattias;
Pawitan, Yudi

Publication type:

Article

Genome assembly from synthetic long read clouds.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. i216, doi. 10.1093/bioinformatics/btw267

By:

Kuleshov, Volodymyr;
Snyder, Michael P.;
Batzoglou, Serafim

Publication type:

Article

Utilizing the Jaccard index to reveal population stratification in sequencing data: a simulation study and an application to the 1000 Genomes Project.

Published in:

Bioinformatics, 2016, v. 32, n. 9, p. 1366, doi. 10.1093/bioinformatics/btv752

By:

Prokopenko, Dmitry;
Hecker, Julian;
Silverman, Edwin K.;
Pagano, Marcello;
Nöthen, Markus M.;
Dina, Christian;
Lange, Christoph;
Fier, Heide Loehlein

Publication type:

Article

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 767, doi. 10.1093/bioinformatics/btv661

By:

Hoff, Katharina J.;
Lange, Simone;
Lomsadze, Alexandre;
Borodovsky, Mark;
Stanke, Mario

Publication type:

Article

iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition.

Published in:

Bioinformatics, 2016, v. 32, n. 3, p. 362, doi. 10.1093/bioinformatics/btv604

By:

Bin Liu;
Longyun Fang;
Ren Long;
Xun Lan;
Kuo-Chen Chou

Publication type:

Article

antaRNA: ant colony-based RNA sequence design.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3114, doi. 10.1093/bioinformatics/btv319

By:

Kleinkauf, Robert;
Mann, Martin;
Backofen, Rolf

Publication type:

Article

Improved rat genome gene prediction by integration of ESTs with RNA-Seq information.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 25, doi. 10.1093/bioinformatics/btu608

By:

Li, Liping;
Chen, Enguo;
Yang, Chun;
Zhu, Jun;
Jayaraman, Pushkala;
De Pons, Jeffrey;
Kaczorowski, Catherine C.;
Jacob, Howard J.;
Greene, Andrew S.;
Hodges, Matthew R.;
Cowley, Allen W.;
Liang, Mingyu;
Xu, Haiming;
Liu, Pengyuan;
Lu, Yan

Publication type:

Article

subSeq: Determining Appropriate Sequencing Depth Through Efficient Read Subsampling.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3424, doi. 10.1093/bioinformatics/btu552

By:

Robinson, David G.;
Storey, John D.

Publication type:

Article

RVboost: RNA-seq variants prioritization using a boosting method.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3414, doi. 10.1093/bioinformatics/btu577

By:

Wang, Chen;
Davila, Jaime I.;
Baheti, Saurabh;
Bhagwate, Aditya V.;
Wang, Xue;
Kocher, Jean-Pierre A.;
Slager, Susan L.;
Feldman, Andrew L.;
Novak, Anne J.;
Cerhan, James R.;
Thompson, E. Aubrey;
Asmann, Yan W.

Publication type:

Article

Phylogenetics, likelihood, evolution and complexity.

Published in:

Bioinformatics, 2012, v. 28, n. 22, p. 2989, doi. 10.1093/bioinformatics/bts555

By:

de Koning, A.P. Jason;
Gu, Wanjun;
Castoe, Todd A.;
Pollock, David D.

Publication type:

Article

BamTools: a C++ API and toolkit for analyzing and managing BAM files.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1691, doi. 10.1093/bioinformatics/btr174

By:

Barnett, Derek W.;
Garrison, Erik K.;
Quinlan, Aaron R.;
Strömberg, Michael P.;
Marth, Gabor T.

Publication type:

Article

New molecule design with in-silico methods for Covid-19 treatment.

Published in:

Bioorganic & Medicinal Chemistry Reports, 2020, v. 3, n. 2, p. 32, doi. 10.25135/acg.bmcr.23.20.08.1773

By:

Alagöz, Mehmet Abdullah

Publication type:

Article

From the editors.

Published in:: Nature Reviews Genetics, 2010, v. 11, n. 7, p. 451, doi. 10.1038/nrg2826
Publication type:: Article

Regulatory elements: A metamorphosis in synthesis.

Published in:

2010

By:

Gunter, Chris

Publication type:

journal article

Transcriptomics: Revealing the extent of RNA editing.

Published in:

Nature Reviews Genetics, 2009, v. 10, n. 7, p. 426, doi. 10.1038/nrg2623

By:

Flintoft, Louisa

Publication type:

Article