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- Title
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads.
- Authors
Chong, Zechen; Ruan, Jue; Wu, Chung-I
- Abstract
The innovation of restriction-site associated DNA sequencing (RAD-seq) method takes full advantage of next-generation sequencing technology. By clustering paired-end short reads into groups with their own unique tags, RAD-seq assembly problem is divided into subproblems. Fast and accurately clustering and assembling millions of RAD-seq reads with sequencing errors, different levels of heterozygosity and repetitive sequences is a challenging question.
- Publication
Bioinformatics (Oxford, England), 2012, Vol 28, Issue 21, p2732
- ISSN
1367-4811
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/bts482