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- Title
GMD: measuring the distance between histograms with applications on high-throughput sequencing reads.
- Authors
Zhao, Xiaobei; Sandelin, Albin
- Abstract
GMD (generalized minimum distance of distributions) is an R package to assess the similarity between spatial distributions of read-based sequencing data such as ChIP-seq and RNA-seq. GMD calculates the optimal distance between pairs of normalized signal distributions, optionally sliding one distribution over the other to 'align' the distributions. GMD also provides graphical and downstream clustering tools.
- Publication
Bioinformatics (Oxford, England), 2012, Vol 28, Issue 8, p1164
- ISSN
1367-4811
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/bts087