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- Title
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
- Authors
Bonnal, Raoul J P; Aerts, Jan; Githinji, George; Goto, Naohisa; MacLean, Dan; Miller, Chase A; Mishima, Hiroyuki; Pagani, Massimiliano; Ramirez-Gonzalez, Ricardo; Smant, Geert; Strozzi, Francesco; Syme, Rob; Vos, Rutger; Wennblom, Trevor J; Woodcroft, Ben J; Katayama, Toshiaki; Prins, Pjotr
- Abstract
Biogem provides a software development environment for the Ruby programming language, which encourages community-based software development for bioinformatics while lowering the barrier to entry and encouraging best practices. Biogem, with its targeted modular and decentralized approach, software generator, tools and tight web integration, is an improved general model for scaling up collaborative open source software development in bioinformatics.
- Publication
Bioinformatics (Oxford, England), 2012, Vol 28, Issue 7, p1035
- ISSN
1367-4811
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/bts080