We found a match
Your institution may have access to this item. Find your institution then sign in to continue.
- Title
Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format.
- Authors
Edmonson, Michael N; Zhang, Jinghui; Yan, Chunhua; Finney, Richard P; Meerzaman, Daoud M; Buetow, Kenneth H
- Abstract
Bambino is a variant detector and graphical alignment viewer for next-generation sequencing data in the SAM/BAM format, which is capable of pooling data from multiple source files. The variant detector takes advantage of SAM-specific annotations, and produces detailed output suitable for genotyping and identification of somatic mutations. The assembly viewer can display reads in the context of either a user-provided or automatically generated reference sequence, retrieve genome annotation features from a UCSC genome annotation database, display histograms of non-reference allele frequencies, and predict protein-coding changes caused by SNPs.
- Publication
Bioinformatics (Oxford, England), 2011, Vol 27, Issue 6, p865
- ISSN
1367-4811
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/btr032