We found a match
Your institution may have access to this item. Find your institution then sign in to continue.
- Title
De novo transcriptome assembly with ABySS.
- Authors
Birol, Inanç; Jackman, Shaun D; Nielsen, Cydney B; Qian, Jenny Q; Varhol, Richard; Stazyk, Greg; Morin, Ryan D; Zhao, Yongjun; Hirst, Martin; Schein, Jacqueline E; Horsman, Doug E; Connors, Joseph M; Gascoyne, Randy D; Marra, Marco A; Jones, Steven J M
- Abstract
Whole transcriptome shotgun sequencing data from non-normalized samples offer unique opportunities to study the metabolic states of organisms. One can deduce gene expression levels using sequence coverage as a surrogate, identify coding changes or discover novel isoforms or transcripts. Especially for discovery of novel events, de novo assembly of transcriptomes is desirable.
- Publication
Bioinformatics (Oxford, England), 2009, Vol 25, Issue 21, p2872
- ISSN
1367-4811
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/btp367