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- Title
Visualization of genomic data with the Hilbert curve.
- Abstract
In many genomic studies, one works with genome-position-dependent data, e.g. ChIP-chip or ChIP-Seq scores. Using conventional tools, it can be difficult to get a good feel for the data, especially the distribution of features. This article argues that the so-called Hilbert curve visualization can complement genome browsers and help to get further insights into the structure of ones data. This is demonstrated with examples from different use cases. An open-source application, called HilbertVis, is presented that allows the user to produce and interactively explore such plots. Availability: http://www.ebi.ac.uk/huber-srv/hilbert/ Contact: sanders@fs.tum.de Supplementary information: Supplementary Data are available at Bioinformatics online.
- Publication
Bioinformatics, 2009, Vol 25, Issue 10, p1231
- ISSN
1367-4803
- Publication type
Academic Journal
- DOI
10.1093/bioinformatics/btp152