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- Title
STEM: species tree estimation using maximum likelihood for gene trees under coalescence.
- Authors
Kubatko, Laura S; Carstens, Bryan C; Knowles, L Lacey
- Abstract
STEM is a software package written in the C language to obtain maximum likelihood (ML) estimates for phylogenetic species trees given a sample of gene trees under the coalescent model. It includes options to compute the ML species tree, search the space of all species trees for the k trees of highest likelihood and compute ML branch lengths for a user-input species tree.
- Publication
Bioinformatics (Oxford, England), 2009, Vol 25, Issue 7, p971
- ISSN
1367-4811
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/btp079