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- Title
NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results.
- Authors
Jacques Lagnel; Costas S. Tsigenopoulos; Ioannis Iliopoulos
- Abstract
Summary: NOBLAST (New Options for BLAST) is an open source program that provides a new user-friendly tabular output format for various NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn, Tblastx, Mega BLAST and Psi BLAST) without any use of a parser and provides E-value correction in case of use of segmented BLAST database. JAMBLAST using the NOBLAST output allows the user to manage, view and filter the BLAST hits using a number of selection criteria. Availability: A distribution package of NOBLAST and JAMBLAST including detailed installation procedure is freely available from http://sourceforge.net/projects/JAMBLAST/ and http://sourceforge.net/projects/NOBLAST. Contact: lagnel@her.hcmr.gr; ioannis@iti.gr Supplementary information: Supplementary data are available at Bioinformatics online.
- Publication
Bioinformatics, 2009, Vol 25, Issue 6, p824
- ISSN
1367-4803
- Publication type
Academic Journal
- DOI
10.1093/bioinformatics/btp067