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- Title
Sircah: a tool for the detection and visualization of alternative transcripts.
- Authors
Harrington, Eoghan D; Bork, Peer
- Abstract
Sircah is a flexible tool for the detection, analysis and visualization of alternative transcripts. It takes as input gene models or spliced alignments and creates a database of alternative transcription events: alternative transcription initiation and polyadenylation, alternative 3' and 5' splice-site usage, skipped exons and retained introns. The results can be visualized in a variety of ways, allowing the creation of publication quality images.
- Publication
Bioinformatics (Oxford, England), 2008, Vol 24, Issue 17, p1959
- ISSN
1367-4811
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/btn361