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- Title
Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.
- Authors
Tsuruoka, Yoshimasa; McNaught, John; Tsujii, Jun'ichi; Ananiadou, Sophia
- Abstract
One of the bottlenecks of biomedical data integration is variation of terms. Exact string matching often fails to associate a name with its biological concept, i.e. ID or accession number in the database, due to seemingly small differences of names. Soft string matching potentially enables us to find the relevant ID by considering the similarity between the names. However, the accuracy of soft matching highly depends on the similarity measure employed.
- Publication
Bioinformatics (Oxford, England), 2007, Vol 23, Issue 20, p2768
- ISSN
1367-4811
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/btm393