We found a match
Your institution may have access to this item. Find your institution then sign in to continue.
- Title
Gepard: a rapid and sensitive tool for creating dotplots on genome scale.
- Authors
Jan Krumsiek; Roland Arnold; Thomas Rattei
- Abstract
Summary: Gepard provides a user-friendly, interactive application for the quick creation of dotplots. It utilizes suffix arrays to reduce the time complexity of dotplot calculation to Θ(m*log n). A client–server mode, which is a novel feature for dotplot creation software, allows the user to calculate dotplots and color them by functional annotation without any prior downloading of sequence or annotation data.Availability: Both source codes and executable binaries are available at http://mips.gsf.de/services/analysis/gepardContact:krumsiek@in.tum.de
- Publication
Bioinformatics, 2007, Vol 23, Issue 8, p1026
- ISSN
1367-4803
- Publication type
Academic Journal
- DOI
10.1093/bioinformatics/btm039