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- Title
Extending MapMan: application to legume genome arrays.
- Authors
Goffard, Nicolas; Weiller, Georg
- Abstract
Based on a gene classification into hierarchical categories ('BINs'), MapMan was originally developed to display Arabidopsis thaliana gene expression in a functional context. We have created a bioinformatics system to extend MapMan to any organism by using a new BIN structure based on the KEGG database. Gene sequences are assigned to this ontology by homology relationships in four reference databases: KEGG, COG, Swiss-Prot and Gene Ontology. We applied this system to tailor MapMan to the GeneChips of two model legumes, Glycine max and Medicago truncatula. We also developed a module to identify the most relevant pathways involved.
- Publication
Bioinformatics (Oxford, England), 2006, Vol 22, Issue 23, p2958
- ISSN
1367-4811
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/btl517