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- Title
WindowMasker: window-based masker for sequenced genomes.
- Authors
Morgulis, Aleksandr; Gertz, E Michael; Schäffer, Alejandro A; Agarwala, Richa
- Abstract
Matches to repetitive sequences are usually undesirable in the output of DNA database searches. Repetitive sequences need not be matched to a query, if they can be masked in the database. RepeatMasker/Maskeraid (RM), currently the most widely used software for DNA sequence masking, is slow and requires a library of repetitive template sequences, such as a manually curated RepBase library, that may not exist for newly sequenced genomes.
- Publication
Bioinformatics (Oxford, England), 2006, Vol 22, Issue 2, p134
- ISSN
1367-4803
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/bti774