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- Title
PDZBase: a protein-protein interaction database for PDZ-domains.
- Authors
Beuming, Thijs; Skrabanek, Lucy; Niv, Masha Y; Mukherjee, Piali; Weinstein, Harel
- Abstract
PDZBase is a database that aims to contain all known PDZ-domain-mediated protein-protein interactions. Currently, PDZBase contains approximately 300 such interactions, which have been manually extracted from > 200 articles. The database can be queried through both sequence motif and keyword-based searches, and the sequences of interacting proteins can be visually inspected through alignments (for the comparison of several interactions), or as residue-based diagrams including schematic secondary structure information (for individual complexes).
- Publication
Bioinformatics (Oxford, England), 2005, Vol 21, Issue 6, p827
- ISSN
1367-4803
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/bti098