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- Title
PDP: protein domain parser.
- Authors
Alexandrov, Nickolai; Shindyalov, Ilya
- Abstract
We have developed a program for automatic identification of domains in protein three-dimensional structures. Performance of the program was assessed by three different benchmarks: (i) by comparison with the expert-curated SCOP database of structural domains; (ii) by comparison with a collection of manual domain assignments; and (iii) by comparison with a set of 55 proteins, frequently used as a benchmark for automatic domain assignment. In all these benchmarks PDP identified domains correctly in more than 80% of proteins.
- Publication
Bioinformatics (Oxford, England), 2003, Vol 19, Issue 3, p429
- ISSN
1367-4803
- Publication type
Journal Article
- DOI
10.1093/bioinformatics/btg006