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Title: MerCat2: a versatile <i>k</i> -mer counter and diversity estimator for database-independent property analysis obtained from omics data.
Authors: Figueroa, Jose L, 3rd; Redinbo, Andrew; Panyala, Ajay; Colby, Sean; Friesen, Maren L; Tiemann, Lisa; White, Richard Allen, 3rd
Abstract: MerCat2 ("Mer-Catenate2") is a versatile, parallel, scalable and modular property software package for robustly analyzing features in omics data. Using massively parallel sequencing raw reads, assembled contigs, and protein sequences from any platform as input, MerCat2 performs k -mer counting of any length k , resulting in feature abundance counts tables, quality control reports, protein feature metrics, and graphical representation (i.e. principal component analysis (PCA)).
Publication: Bioinformatics advances, 2024, Vol 4, Issue 1, pvbae061
ISSN: 2635-0041
Publication type: Journal Article
DOI: 10.1093/bioadv/vbae061

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MerCat2: a versatile <i>k</i> -mer counter and diversity estimator for database-independent property analysis obtained from omics data.