Works matching DE "RNA splicing"

Results: 4310

Mago nashi controls auxin‐mediated embryo patterning in Arabidopsis by regulating transcript abundance.

Published in:

New Phytologist, 2025, v. 247, n. 1, p. 14, doi. 10.1111/nph.70154

By:

Liu, Liping;
Gong, Wen;
Stöckl, Regina;
Denninger, Philipp;
Schwartz, Uwe;
Johnson, Mark A.;
Dresselhaus, Thomas

Publication type:

Article

Mutations in the microexon splicing regulator srrm4 have minor phenotypic effects on zebrafish neural development Open Access.

Published in:

G3: Genes | Genomes | Genetics, 2025, v. 15, n. 5, p. 1, doi. 10.1093/g3journal/jkaf052

By:

Gupta, Tripti;
Margolin, Gennady;
Burgess, Harold A

Publication type:

Article

Domain acquisition enabled functional expansion of the TFIIS transcription factor family.

Published in:

Cell & Bioscience, 2025, v. 15, n. 1, p. 1, doi. 10.1186/s13578-025-01423-9

By:

Matveyeva, Kateryna;
de Diego, Ainhoa Sánchez;
García-López, María Ángeles;
Gutiérrez, Julio;
Fischer, Thierry;
van Wely, Karel H.M.

Publication type:

Article

Pre-mRNA Splicing Functions in Plant Sexual Reproduction Development.

Published in:

Plants (2223-7747), 2025, v. 14, n. 10, p. 1472, doi. 10.3390/plants14101472

By:

Shao, Dongjie;
Gao, Xinqi;
Wei, Yiming

Publication type:

Article

Identification and Analysis of Endoplasmic-Reticulum-Stress- and Salt-Stress-Related Genes in Solanum tuberosum Genome: StbZIP60 Undergoes Splicing in Response to Salt Stress and ER Stress.

Published in:

Agronomy, 2025, v. 15, n. 5, p. 1224, doi. 10.3390/agronomy15051224

By:

Guan, Peiyan;
Zhao, Dongbo;
Zhang, Chenxi;
Qiu, Zhennan;
Chen, Qingshuai;
Solyanikova, Inna P.;
Sun, Peinan;
Cui, Peipei;
Yu, Ru;
Zhang, Xia;
Li, Yanmei;
Hu, Linshuang

Publication type:

Article

ACADVL Deep Sequencing in a Case Study: Beyond the Common c.848T>C Pathogenic Variant.

Published in:

Genes, 2025, v. 16, n. 5, p. 538, doi. 10.3390/genes16050538

By:

Baldo, Francesco;
Zupin, Luisa;
Magnolato, Andrea;
Capaci, Valeria;
Bonati, Maria Teresa

Publication type:

Article

SR protein kinases promote splicing of nonconsensus introns.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 8, p. 611, doi. 10.1038/nsmb.3057

By:

Lipp, Jesse J;
Marvin, Michael C;
Shokat, Kevan M;
Guthrie, Christine

Publication type:

Article

RBFOX and SUP-12 sandwich a G base to cooperatively regulate tissue-specific splicing.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 9, p. 778, doi. 10.1038/nsmb.2870

By:

Kuwasako, Kanako;
Takahashi, Mari;
Unzai, Satoru;
Tsuda, Kengo;
Yoshikawa, Seiko;
He, Fahu;
Kobayashi, Naohiro;
Güntert, Peter;
Shirouzu, Mikako;
Ito, Takuhiro;
Tanaka, Akiko;
Yokoyama, Shigeyuki;
Hagiwara, Masatoshi;
Kuroyanagi, Hidehito;
Muto, Yutaka

Publication type:

Article

Biased Brownian ratcheting leads to pre-mRNA remodeling and capture prior to first-step splicing.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1450, doi. 10.1038/nsmb.2704

By:

Krishnan, Ramya;
Blanco, Mario R;
Kahlscheuer, Matthew L;
Abelson, John;
Guthrie, Christine;
Walter, Nils G

Publication type:

Article

Molecular basis of UG-rich RNA recognition by the human splicing factor TDP-43.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1443, doi. 10.1038/nsmb.2698

By:

Lukavsky, Peter J;
Daujotyte, Dalia;
Tollervey, James R;
Ule, Jernej;
Stuani, Cristiana;
Buratti, Emanuele;
Baralle, Francisco E;
Damberger, Fred F;
Allain, Frédéric H-T

Publication type:

Article

A conformational switch in PRP8 mediates metal ion coordination that promotes pre-mRNA exon ligation.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 6, p. 728, doi. 10.1038/nsmb.2556

By:

Schellenberg, Matthew J;
Wu, Tao;
Ritchie, Dustin B;
Fica, Sebastian;
Staley, Jonathan P;
Atta, Karim A;
LaPointe, Paul;
MacMillan, Andrew M

Publication type:

Article

A complex network of factors with overlapping affinities represses splicing through intronic elements.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 1, p. 36, doi. 10.1038/nsmb.2459

By:

Wang, Yang;
Xiao, Xinshu;
Zhang, Jianming;
Choudhury, Rajarshi;
Robertson, Alex;
Li, Kai;
Ma, Meng;
Burge, Christopher B;
Wang, Zefeng

Publication type:

Article

Splicing switch of an epigenetic regulator by RNA helicases promotes tumor-cell invasiveness.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1139, doi. 10.1038/nsmb.2390

By:

Dardenne, Etienne;
Pierredon, Sandra;
Driouch, Keltouma;
Gratadou, Lise;
Lacroix-Triki, Magali;
Espinoza, Micaela Polay;
Zonta, Eleonora;
Germann, Sophie;
Mortada, Hussein;
Villemin, Jean-Philippe;
Dutertre, Martin;
Lidereau, Rosette;
Vagner, Stéphan;
Auboeuf, Didier

Publication type:

Article

New functions for DNA modifications by TET-JBP.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1061, doi. 10.1038/nsmb.2437

By:

Huang, Yun;
Rao, Anjana

Publication type:

Article

Cis-acting noncoding RNAs: friends and foes.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1068, doi. 10.1038/nsmb.2428

By:

Guil, Sònia;
Esteller, Manel

Publication type:

Article

Argonaute proteins couple chromatin silencing to alternative splicing.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 10, p. 998, doi. 10.1038/nsmb.2373

By:

Ameyar-Zazoua, Maya;
Rachez, Christophe;
Souidi, Mouloud;
Robin, Philippe;
Fritsch, Lauriane;
Young, Robert;
Morozova, Nadya;
Fenouil, Romain;
Descostes, Nicolas;
Andrau, Jean-Christophe;
Mathieu, Jacques;
Hamiche, Ali;
Ait-Si-Ali, Slimane;
Muchardt, Christian;
Batsché, Eric;
Harel-Bellan, Annick

Publication type:

Article

Human CWC22 escorts the helicase eIF4AIII to spliceosomes and promotes exon junction complex assembly.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 10, p. 983, doi. 10.1038/nsmb.2380

By:

Barbosa, Isabelle;
Haque, Nazmul;
Fiorini, Francesca;
Barrandon, Charlotte;
Tomasetto, Catherine;
Blanchette, Marco;
Le Hir, Hervé

Publication type:

Article

Intronic splicing enhancers, cognate splicing factors and context-dependent regulation rules.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 10, p. 1044, doi. 10.1038/nsmb.2377

By:

Wang, Yang;
Ma, Meng;
Xiao, Xinshu;
Wang, Zefeng

Publication type:

Article

5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 10, p. 1037, doi. 10.1038/nsmb.2372

By:

Khare, Tarang;
Pai, Shraddha;
Koncevicius, Karolis;
Pal, Mrinal;
Kriukiene, Edita;
Liutkeviciute, Zita;
Irimia, Manuel;
Jia, Peixin;
Ptak, Carolyn;
Xia, Menghang;
Tice, Raymond;
Tochigi, Mamoru;
Moréra, Solange;
Nazarians, Anaies;
Belsham, Denise;
Wong, Albert H C;
Blencowe, Benjamin J;
Wang, Sun Chong;
Kapranov, Philipp;
Kustra, Rafal

Publication type:

Article

Crystal structure of a group II intron in the pre-catalytic state.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 5, p. 555, doi. 10.1038/nsmb.2270

By:

Chan, Russell T;
Robart, Aaron R;
Rajashankar, Kanagalaghatta R;
Pyle, Anna Marie;
Toor, Navtej

Publication type:

Article

The cryo-EM structure of the UPF-EJC complex shows UPF1 poised toward the RNA 3? end.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 5, p. 498, doi. 10.1038/nsmb.2287

By:

Melero, Roberto;
Buchwald, Gretel;
Castaño, Raquel;
Raabe, Monika;
Gil, David;
Lázaro, Melisa;
Urlaub, Henning;
Conti, Elena;
Llorca, Oscar

Publication type:

Article

Control of RNP motility and localization by a splicing-dependent structure in oskar mRNA.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 4, p. 441, doi. 10.1038/nsmb.2257

By:

Ghosh, Sanjay;
Marchand, Virginie;
Gáspár, Imre;
Ephrussi, Anne

Publication type:

Article

The structure of the ASAP core complex reveals the existence of a Pinin-containing PSAP complex.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 4, p. 378, doi. 10.1038/nsmb.2242

By:

Murachelli, Andrea Giovanni;
Ebert, Judith;
Basquin, Claire;
Le Hir, Hervé;
Conti, Elena

Publication type:

Article

Concentration-dependent control of pyruvate kinase M mutually exclusive splicing by hnRNP proteins.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 3, p. 346, doi. 10.1038/nsmb.2219

By:

Chen, Mo;
David, Charles J;
Manley, James L

Publication type:

Article

Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 9, p. 977, doi. 10.1038/nsmb.2123

By:

de Almeida, Sérgio Fernandes;
Grosso, Ana Rita;
Koch, Frederic;
Fenouil, Romain;
Carvalho, Sílvia;
Andrade, Jorge;
Levezinho, Helena;
Gut, Marta;
Eick, Dirk;
Gut, Ivo;
Andrau, Jean-Christophe;
Ferrier, Pierre;
Carmo-Fonseca, Maria

Publication type:

Article

Alternative splicing of SYK regulates mitosis and cell survival.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 6, p. 673, doi. 10.1038/nsmb.2040

By:

Prinos, Panagiotis;
Garneau, Daniel;
Lucier, Jean-François;
Gendron, Daniel;
Couture, Sonia;
Boivin, Marianne;
Brosseau, Jean-Philippe;
Lapointe, Elvy;
Thibault, Philippe;
Durand, Mathieu;
Tremblay, Karine;
Gervais-Bird, Julien;
Nwilati, Hanad;
Klinck, Roscoe;
Chabot, Benoit;
Perreault, Jean-Pierre;
Wellinger, Raymund J.;
Elela, Sherif Abou

Publication type:

Article

Research highlights.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 4, p. 403, doi. 10.1038/nsmb0411-403

By:

Chen, Ineês;
Konforti, Boyana;
Mason, Steve

Publication type:

Article

RNA secondary structure in mutually exclusive splicing.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 2, p. 159, doi. 10.1038/nsmb.1959

By:

Yun Yang;
Leilei Zhan;
Wenjing Zhang;
Feng Sun;
Wenfeng Wang;
Nan Tian;
Jingpei Bi;
Haitao Wang;
Dike Shi;
Yajian Jiang;
Yaozhou Zhang;
Yongfeng Jin

Publication type:

Article

The exon junction complex differentially marks spliced junctions.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 10, p. 1269, doi. 10.1038/nsmb.1890

By:

Saulière, Jérôme;
Haque, Nazmul;
Harms, Scot;
Barbosa, Isabelle;
Blanchette, Marco;
Le Hir, Hervé

Publication type:

Article

Gene-specific RNA polymerase II phosphorylation and the CTD code.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 10, p. 1279, doi. 10.1038/nsmb.1913

By:

Hyunmin Kim;
Erickson, Benjamin;
Weifei Luo;
Seward, David;
Graber, Joel H.;
Pollock, David D.;
Megee, Paul C.;
Bentley, David L.

Publication type:

Article

The A-repeat links ASF/SF2-dependent Xist RNA processing with random choice during X inactivation.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 8, p. 948, doi. 10.1038/nsmb.1877

By:

Royce-Tolland, Morgan E.;
Andersen, Angela A.;
Koyfman, Hannah R.;
Talbot, Dale J.;
Wutz, Anton;
Tonks, Ian D.;
Kay, Graham F.;
Panning, Barbara

Publication type:

Article

Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 8, p. 1030, doi. 10.1038/nsmb.1841

By:

Taft, Ryan J.;
Simons, Cas;
Nahkuri, Satu;
Oey, Harald;
Korbie, Darren J.;
Mercer, Timothy R.;
Holst, Jeff;
Ritchie, William;
Wong, Justin J.-L.;
Rasko, John E. J.;
Rokhsar, Daniel S.;
Degnan, Bernard M.;
Mattick, John S.

Publication type:

Article

Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 7, p. 853, doi. 10.1038/nsmb.1814

By:

Dominguez, Cyril;
Fisette, Jean-François;
Chabot, Benoit;
Allain, Frédéric H.-T.

Publication type:

Article

Human PRP4 kinase is required for stable tri-snRNP association during spliceosomal B complex formation.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 2, p. 216, doi. 10.1038/nsmb.1718

By:

Schneider, Marc;
He-Hsuan Hsiao;
Will, Cindy L.;
Giet, Régis;
Urlaub, Henning;
Lührmann, Reinhard

Publication type:

Article

Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 2, p. 187, doi. 10.1038/nsmb.1720

By:

Hongqing Du;
Cline, Melissa S.;
Osborne, Robert J.;
Tuttle, Daniel L.;
Clark, Tyson A.;
Donohue, John Paul;
Hall, Megan P.;
Shiue, Lily;
Swanson, Maurice S.;
Thornton, Charles A.;
Ares, Jr, Manuel

Publication type:

Article

Tracking rates of transcription and splicing in vivo.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 11, p. 1123, doi. 10.1038/nsmb1109-1123

By:

Ardehali, M. Behfar;
Lis, John T.

Publication type:

Article

Splice site strength–dependent activity and genetic buffering by poly-G runs.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 10, p. 1094, doi. 10.1038/nsmb.1661

By:

Xinshu Xiao;
Zefeng Wang;
Minyoung Jang;
Razvan Nutiu;
Eric T. Wang;
Burge, Christopher B.

Publication type:

Article

Structural evidence for consecutive Hel308-like modules in the spliceosomal ATPase Brr2.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 7, p. 731, doi. 10.1038/nsmb.1625

By:

Lingdi Zhang;
Tao Xu;
Maeder, Corina;
Bud, Laura-Oana;
Shanks, James;
Nix, Jay;
Guthrie, Christine;
Pleiss, Jeffrey A;
Rui Zhao

Publication type:

Article

Cancer-associated regulation of alternative splicing.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 6, p. 670, doi. 10.1038/nsmb.1608

By:

Venables, Julian P.;
Klinck, Roscoe;
Koh, ChuShin;
Gervais-Bird, Julien;
Bramard, Anne;
Inkel, Lyna;
Durand, Mathieu;
Couture, Sonia;
Froehlich, Ulrike;
Lapointe, Elvy;
Lucier, Jean-François;
Thibault, Philippe;
Rancourt, Claudine;
Tremblay, Karine;
Prinos, Panagiotis;
Chabot, Benoit;
Elela, Sherif Abou

Publication type:

Article

A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 5, p. 541, doi. 10.1038/nsmb.1588

By:

Hammond, Ming C.;
Wachter, Andreas;
Breaker, Ronald R.

Publication type:

Article

Phosphorylation-mediated unfolding of a KH domain regulates KSRP localization via 14-3-3 binding.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 3, p. 238, doi. 10.1038/nsmb.1558

By:

Díaz-Moreno, Irene;
Hollingworth, David;
Frenkiel, Thomas A.;
Kelly, Geoff;
Martin, Stephen;
Howell, Steven;
García-Mayoral, MaríaFlor;
Gherzi, Roberto;
Briata, Paola;
Ramos, Andres

Publication type:

Article

An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 2, p. 130, doi. 10.1038/nsmb.1545

By:

Yeo, Gene W;
Coufal, Nicole G;
Liang, Tiffany Y;
Peng, Grace E;
Fu, Xiang-Dong;
Gage, Fred H

Publication type:

Article

Recognition of atypical 5′ splice sites by shifted base-pairing to U1 snRNA.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 2, p. 176, doi. 10.1038/nsmb.1546

By:

Roca, Xavier;
Krainer, Adrian R

Publication type:

Article

Nonsense-mediated mRNA decay (NMD) mechanisms.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 2, p. 107, doi. 10.1038/nsmb.1550

By:

Brogna, Saverio;
Wen, Jikai

Publication type:

Article

ATP-dependent unwinding of U4/U6 snRNAs by the Brr2 helicase requires the C terminus of Prp8.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 1, p. 42, doi. 10.1038/nsmb.1535

By:

Maeder, Corina;
Kutach, Alan K;
Guthrie, Christine

Publication type:

Article

Alternative splicing: regulation without regulators.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 1, p. 13, doi. 10.1038/nsmb0109-13

By:

Graveley, Brenton R.

Publication type:

Article

Eye on RNA unwinding.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 1, p. 7, doi. 10.1038/nsmb0109-7

By:

Brow, David A.

Publication type:

Article

Structural insights into RNA recognition by the alternative-splicing regulator muscleblind-like MBNL1.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 12, p. 1343, doi. 10.1038/nsmb.1519

By:

Teplova, Marianna;
Patel, Dinshaw J.

Publication type:

Article

Phosphorylation switches the general splicing repressor SRp38 to a sequence-specific activator.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 10, p. 1040, doi. 10.1038/nsmb.1485

By:

Ying Feng;
Mo Chen;
Manley, James L.

Publication type:

Article

The splicing factor SC35 has an active role in transcriptional elongation.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 8, p. 819, doi. 10.1038/nsmb.1461

By:

Lin, Shengrong;
Coutinho-Mansfield, Gabriela;
Wang, Dong;
Pandit, Shatakshi;
Fu, Xiang-Dong

Publication type:

Article