Works matching DE "PYROSEQUENCING"

Results: 893

Epigenetic Clock in Bears: A Simple Cost‐Effective Blood DNA Methylation‐Based Age Estimation Method Applicable to Multiple Bear Species.

Published in:

Ecology & Evolution (20457758), 2025, v. 15, n. 5, p. 1, doi. 10.1002/ece3.71424

By:

Shimozuru, Michito;
Nakamura, Shiori;
Yamazaki, Jumpei;
Yanagawa, Yojiro;
Tamatani, Hiroo;
Kuroe, Misako;
Yamazaki, Koji;
Koike, Shinsuke;
Goto, Yusuke;
Naganuma, Tomoko;
Tochigi, Kahoko;
Inagaki, Akino;
Takekoshi, Naoki;
Baek, Seungyun;
Sato, Nobutaka;
Honda, Yusuke;
Tsubota, Toshio;
Ito, Hideyuki

Publication type:

Article

Protists in the polar regions: comparing occurrence in the Arctic and Southern oceans using pyrosequencing.

Published in:

Polar Research, 2015, v. 34, n. 1, p. 1, doi. 10.3402/polar.v34.23225

By:

Wolf, Christian;
Kilias, Estelle;
Metfies, Katja

Publication type:

Article

Geomicrobiology of Iron Layers in the Sediment of Lake Superior.

Published in:

Aquatic Geochemistry, 2015, v. 21, n. 2-4, p. 123, doi. 10.1007/s10498-015-9258-y

By:

Dittrich, M.;
Moreau, L.;
Gordon, J.;
Quazi, S.;
Palermo, C.;
Fulthorpe, R.;
Katsev, S.;
Bollmann, J.;
Chesnyuk, A.

Publication type:

Article

Vaginal Microbiome of Pregnant Indian Women: Insights into the Genome of Dominant Lactobacillus Species.

Published in:

Microbial Ecology, 2020, v. 80, n. 2, p. 487, doi. 10.1007/s00248-020-01501-0

By:

Mehta, Ojasvi;
Ghosh, Tarini Shankar;
Kothidar, Akansha;
Gowtham, M. Rama;
Mitra, Ridhima;
Kshetrapal, Pallavi;
Wadhwa, Nitya;
Thiruvengadam, Ramachandran;
GARBH-Ini study group;
Bhatnagar, Shinjini;
Das, Bhabatosh;
Kshetrapal, Pallavi S.;
Balakrish Nair, Balakrish G.;
Natchu, Uma Chandra Mouli;
Rath, Satyajit;
Sachdeva, Kanika;
Sopory, Shailaja;
Misra, Sumit;
Singh, Amanpreet;
Sharma, Dharmendra

Publication type:

Article

Latitudinal and Vertical Variation of Synechococcus Assemblage Composition Along 170° W Transect From the South Pacific to the Arctic Ocean.

Published in:

Microbial Ecology, 2019, v. 77, n. 2, p. 333, doi. 10.1007/s00248-018-1308-8

By:

Xia, Xiaomin;
Cheung, Shunyuan;
Endo, Hisashi;
Suzuki, Koji;
Liu, Hongbin

Publication type:

Article

Co-occurrence Networks Among Bacteria and Microbial Eukaryotes of Lake Baikal During a Spring Phytoplankton Bloom.

Published in:

Microbial Ecology, 2019, v. 77, n. 1, p. 96, doi. 10.1007/s00248-018-1212-2

By:

Mikhailov, Ivan S.;
Zakharova, Yulia R.;
Bukin, Yuri S.;
Galachyants, Yuri P.;
Petrova, Darya P.;
Sakirko, Maria V.;
Likhoshway, Yelena V.

Publication type:

Article

Soil Inoculation with Bacillus spp. Modifies Root Endophytic Bacterial Diversity, Evenness, and Community Composition in a Context-Specific Manner.

Published in:

Microbial Ecology, 2018, v. 76, n. 3, p. 741, doi. 10.1007/s00248-018-1160-x

By:

Gadhave, Kiran R.;
Devlin, Paul F.;
Ebertz, Andreas;
Ross, Arabella;
Gange, Alan C.

Publication type:

Article

Comparative Analysis of Drosophila melanogaster Gut Microbiota with Respect to Host Strain, Sex, and Age.

Published in:

Microbial Ecology, 2017, v. 74, n. 1, p. 207, doi. 10.1007/s00248-016-0925-3

By:

Han, Gangsik;
Lee, Hyo;
Jeong, Sang;
Jeon, Che;
Hyun, Seogang

Publication type:

Article

A Metabarcoding Survey on the Fungal Microbiota Associated to the Olive Fruit Fly.

Published in:

Microbial Ecology, 2017, v. 73, n. 3, p. 677, doi. 10.1007/s00248-016-0864-z

By:

Malacrinò, Antonino;
Schena, Leonardo;
Campolo, Orlando;
Laudani, Francesca;
Mosca, Saveria;
Giunti, Giulia;
Strano, Cinzia;
Palmeri, Vincenzo

Publication type:

Article

Bacterial Diversity Patterns Differ in Soils Developing in Sub-tropical and Cool-Temperate Ecosystems.

Published in:

Microbial Ecology, 2017, v. 73, n. 3, p. 556, doi. 10.1007/s00248-016-0884-8

By:

Shanmugam, Shankar;
Magbanua, Zenaida;
Williams, Mark;
Jangid, Kamlesh;
Whitman, William;
Peterson, Daniel;
Kingery, William

Publication type:

Article

Plant Identity Exerts Stronger Effect than Fertilization on Soil Arbuscular Mycorrhizal Fungi in a Sown Pasture.

Published in:

Microbial Ecology, 2016, v. 72, n. 3, p. 647, doi. 10.1007/s00248-016-0817-6

By:

Zheng, Yong;
Chen, Liang;
Luo, Cai-Yun;
Zhang, Zhen-Hua;
Wang, Shi-Ping;
Guo, Liang-Dong

Publication type:

Article

Mineral Type and Solution Chemistry Affect the Structure and Composition of Actively Growing Bacterial Communities as Revealed by Bromodeoxyuridine Immunocapture and 16S rRNA Pyrosequencing.

Published in:

Microbial Ecology, 2016, v. 72, n. 2, p. 428, doi. 10.1007/s00248-016-0774-0

By:

Kelly, L.;
Colin, Y.;
Turpault, M-P.;
Uroz, S.

Publication type:

Article

Supplementing Blends of Sugars, Amino Acids, and Secondary Metabolites to the Diet of Termites ( Reticulitermes flavipes) Drive Distinct Gut Bacterial Communities.

Published in:

Microbial Ecology, 2016, v. 72, n. 3, p. 497, doi. 10.1007/s00248-016-0792-y

By:

Huang, Xing-Feng;
Chaparro, Jacqueline;
Reardon, Kenneth;
Judd, Timothy;
Vivanco, Jorge

Publication type:

Article

Variations in Bacterial Community in a Temperate Lake Associated with an Agricultural Watershed.

Published in:

Microbial Ecology, 2016, v. 72, n. 2, p. 277, doi. 10.1007/s00248-016-0783-z

By:

Song, Liyan;
Li, Lei

Publication type:

Article

Effects of Hypoxia on the Phylogenetic Composition and Species Distribution of Protists in a Subtropical Harbor.

Published in:

Microbial Ecology, 2016, v. 72, n. 1, p. 96, doi. 10.1007/s00248-016-0751-7

By:

Rocke, Emma;
Jing, Hongmei;
Xia, Xiaomin;
Liu, Hongbin

Publication type:

Article

The Truffle Microbiome: Species and Geography Effects on Bacteria Associated with Fruiting Bodies of Hypogeous Pezizales.

Published in:

Microbial Ecology, 2016, v. 72, n. 1, p. 4, doi. 10.1007/s00248-016-0755-3

By:

Benucci, Gian;
Bonito, Gregory M.

Publication type:

Article

Substantial Variability of Multiple Microbial Communities Collected at Similar Acidic Mine Water Outlets.

Published in:

Microbial Ecology, 2016, v. 72, n. 1, p. 163, doi. 10.1007/s00248-016-0760-6

By:

Falteisek, Lukáš;
Duchoslav, Vojtěch;
Čepička, Ivan

Publication type:

Article

The Diversity and Co-occurrence Patterns of N-Fixing Communities in a CO-Enriched Grassland Ecosystem.

Published in:

Microbial Ecology, 2016, v. 71, n. 3, p. 604, doi. 10.1007/s00248-015-0659-7

By:

Tu, Qichao;
Zhou, Xishu;
He, Zhili;
Xue, Kai;
Wu, Liyou;
Reich, Peter;
Hobbie, Sarah;
Zhou, Jizhong

Publication type:

Article

Seasonal Changes in Bacterial Communities Cause Foaming in a Wastewater Treatment Plant.

Published in:

Microbial Ecology, 2016, v. 71, n. 3, p. 660, doi. 10.1007/s00248-015-0700-x

By:

Wang, Ping;
Yu, Zhisheng;
Zhao, Jihong;
Zhang, Hongxun

Publication type:

Article

Amplicon-Based Pyrosequencing Reveals High Diversity of Protistan Parasites in Ships' Ballast Water: Implications for Biogeography and Infectious Diseases.

Published in:

Microbial Ecology, 2016, v. 71, n. 3, p. 530, doi. 10.1007/s00248-015-0684-6

By:

Pagenkopp Lohan, K.;
Fleischer, R.;
Carney, K.;
Holzer, K.;
Ruiz, G.

Publication type:

Article

High Bacterial Diversity and Phylogenetic Novelty in Dark Euxinic Freshwaters Analyzed by 16S Tag Community Profiling.

Published in:

Microbial Ecology, 2016, v. 71, n. 3, p. 566, doi. 10.1007/s00248-015-0696-2

By:

Llorens-Marès, Tomàs;
Triadó-Margarit, Xavier;
Borrego, Carles;
Dupont, Chris;
Casamayor, Emilio

Publication type:

Article

One-Time Addition of Nano-TiO Triggers Short-Term Responses in Benthic Bacterial Communities in Artificial Streams.

Published in:

Microbial Ecology, 2016, v. 71, n. 2, p. 266, doi. 10.1007/s00248-015-0646-z

By:

Ozaki, Alexandra;
Adams, Erin;
Binh, Chu;
Tong, Tiezheng;
Gaillard, Jean-François;
Gray, Kimberly;
Kelly, John

Publication type:

Article

Similarities and Contrasts in the Archaeal Community of Two Japanese Mountains: Mt. Norikura Compared to Mt. Fuji.

Published in:

Microbial Ecology, 2016, v. 71, n. 2, p. 428, doi. 10.1007/s00248-015-0681-9

By:

Singh, Dharmesh;
Takahashi, Koichi;
Park, Jungok;
Adams, Jonathan

Publication type:

Article

Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences.

Published in:

Microbial Ecology, 2016, v. 71, n. 2, p. 482, doi. 10.1007/s00248-015-0669-5

By:

Jeanbille, M.;
Buée, M.;
Bach, C.;
Cébron, A.;
Frey-Klett, P.;
Turpault, M.;
Uroz, S.

Publication type:

Article

Molecular Ecology of nifH Genes and Transcripts Along a Chronosequence in Revegetated Areas of the Tengger Desert.

Published in:

Microbial Ecology, 2016, v. 71, n. 1, p. 150, doi. 10.1007/s00248-015-0657-9

By:

Wang, Jin;
Bao, Jing-Ting;
Li, Xin-Rong;
Liu, Yu-Bing

Publication type:

Article

Bacterial Diversity in the Soda Saline Crater Lake from Isabel Island, Mexico.

Published in:

Microbial Ecology, 2016, v. 71, n. 1, p. 68, doi. 10.1007/s00248-015-0676-6

By:

Aguirre-Garrido, José;
Ramírez-Saad, Hugo;
Toro, Nicolás;
Martínez-Abarca, Francisco

Publication type:

Article

Pyrosequencing-Based Assessment of the Microbial Community Structure of Pastoruri Glacier Area (Huascarán National Park, Perú), a Natural Extreme Acidic Environment.

Published in:

Microbial Ecology, 2015, v. 70, n. 4, p. 936, doi. 10.1007/s00248-015-0634-3

By:

González-Toril, Elena;
Santofimia, Esther;
Blanco, Yolanda;
López-Pamo, Enrique;
Gómez, Manuel;
Bobadilla, Miguel;
Cruz, Rolando;
Palomino, Edwin;
Aguilera, Ángeles

Publication type:

Article

Bacterial Community Diversity in Soil Under two Tillage Practices as Determined by Pyrosequencing.

Published in:

Microbial Ecology, 2015, v. 70, n. 3, p. 853, doi. 10.1007/s00248-015-0609-4

By:

Sengupta, Aditi;
Dick, Warren

Publication type:

Article

The Microbiome of Field-Caught and Laboratory-Adapted Australian Tephritid Fruit Fly Species with Different Host Plant Use and Specialisation.

Published in:

Microbial Ecology, 2015, v. 70, n. 2, p. 498, doi. 10.1007/s00248-015-0571-1

By:

Morrow, J.;
Frommer, M.;
Shearman, D.;
Riegler, M.

Publication type:

Article

The Gut Microbiota of Workers of the Litter-Feeding Termite Syntermes wheeleri (Termitidae: Syntermitinae): Archaeal, Bacterial, and Fungal Communities.

Published in:

Microbial Ecology, 2015, v. 70, n. 2, p. 545, doi. 10.1007/s00248-015-0581-z

By:

Santana, Renata;
Catão, Elisa;
Lopes, Fabyano;
Constantino, Reginaldo;
Barreto, Cristine;
Krüger, Ricardo

Publication type:

Article

Community Structure of Skin Microbiome of Gulf Killifish, Fundulus grandis, Is Driven by Seasonality and Not Exposure to Oiled Sediments in a Louisiana Salt Marsh.

Published in:

Microbial Ecology, 2015, v. 70, n. 2, p. 534, doi. 10.1007/s00248-015-0578-7

By:

Larsen, Andrea;
Bullard, Stephen;
Womble, Matthew;
Arias, Covadonga

Publication type:

Article

Salivary Microbiota Associated with Immunoglobulin A Nephropathy.

Published in:

Microbial Ecology, 2015, v. 70, n. 2, p. 557, doi. 10.1007/s00248-015-0592-9

By:

Piccolo, Maria;
De Angelis, Maria;
Lauriero, Gabriella;
Montemurno, Eustacchio;
Di Cagno, Raffaella;
Gesualdo, Loreto;
Gobbetti, Marco

Publication type:

Article

Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea.

Published in:

Microbial Ecology, 2015, v. 70, n. 2, p. 473, doi. 10.1007/s00248-015-0601-z

By:

Hugoni, Mylène;
Agogué, Hélène;
Taib, Najwa;
Domaizon, Isabelle;
Moné, Anne;
Galand, Pierre;
Bronner, Gisèle;
Debroas, Didier;
Mary, Isabelle

Publication type:

Article

Assessment of Bacterial and Archaeal Community Structure in Swine Wastewater Treatment Processes.

Published in:

Microbial Ecology, 2015, v. 70, n. 1, p. 77, doi. 10.1007/s00248-014-0537-8

By:

Da Silva, Marcio;
Cantão, Mauricio;
Mezzari, Melissa;
Ma, Jie;
Nossa, Carlos

Publication type:

Article

Microbial Community Composition and Ultrastructure of Granules from a Full-Scale Anammox Reactor.

Published in:

Microbial Ecology, 2015, v. 70, n. 1, p. 118, doi. 10.1007/s00248-014-0546-7

By:

Gonzalez-Gil, Graciela;
Sougrat, Rachid;
Behzad, Ali;
Lens, Piet;
Saikaly, Pascal

Publication type:

Article

Bacterial and Archaeal Communities in Sediments of the North Chinese Marginal Seas.

Published in:

Microbial Ecology, 2015, v. 70, n. 1, p. 105, doi. 10.1007/s00248-014-0553-8

By:

Liu, Jiwen;
Liu, Xiaoshou;
Wang, Min;
Qiao, Yanlu;
Zheng, Yanfen;
Zhang, Xiao-Hua

Publication type:

Article

Assessing Fungal Community Structure from Mineral Surfaces in Kartchner Caverns Using Multiplexed 454 Pyrosequencing.

Published in:

Microbial Ecology, 2015, v. 70, n. 1, p. 175, doi. 10.1007/s00248-014-0560-9

By:

Vaughan, Michael;
Nelson, Will;
Soderlund, Carol;
Maier, Raina;
Pryor, Barry

Publication type:

Article

Different Continuous Cropping Spans Significantly Affect Microbial Community Membership and Structure in a Vanilla-Grown Soil as Revealed by Deep Pyrosequencing.

Published in:

Microbial Ecology, 2015, v. 70, n. 1, p. 209, doi. 10.1007/s00248-014-0516-0

By:

Xiong, Wu;
Zhao, Qingyun;
Zhao, Jun;
Xun, Weibing;
Li, Rong;
Zhang, Ruifu;
Wu, Huasong;
Shen, Qirong

Publication type:

Article

Bacterial Community Structure of Autotrophic Denitrification Biocathode by 454 Pyrosequencing of the 16S rRNA Gene.

Published in:

Microbial Ecology, 2015, v. 69, n. 3, p. 492, doi. 10.1007/s00248-014-0492-4

By:

Xiao, Yong;
Zheng, Yue;
Wu, Song;
Yang, Zhao-Hui;
Zhao, Feng

Publication type:

Article

Abundance and Diversity of Bacteria in Oxygen Minimum Drinking Water Reservoir Sediments Studied by Quantitative PCR and Pyrosequencing.

Published in:

Microbial Ecology, 2015, v. 69, n. 3, p. 618, doi. 10.1007/s00248-014-0539-6

By:

Zhang, Hai-han;
Huang, Ting-lin;
Chen, Sheng-nan;
Yang, Xiao;
Lv, Kai;
Sekar, Raju

Publication type:

Article

Comparative Analysis of the Intestinal Bacterial Communities in Different Species of Carp by Pyrosequencing.

Published in:

Microbial Ecology, 2015, v. 69, n. 1, p. 25, doi. 10.1007/s00248-014-0480-8

By:

Li, Tongtong;
Long, Meng;
Gatesoupe, François-Joël;
Zhang, Qianqian;
Li, Aihua;
Gong, Xiaoning

Publication type:

Article

Evidence for differences in DNA methylation between Germans and Japanese.

Published in:

International Journal of Legal Medicine, 2022, v. 136, n. 2, p. 405, doi. 10.1007/s00414-021-02736-3

By:

Becker, J.;
Böhme, P.;
Reckert, A.;
Eickhoff, S. B.;
Koop, B. E.;
Blum, J.;
Gündüz, T.;
Takayama, M.;
Wagner, W.;
Ritz-Timme, S.

Publication type:

Article

Vibration as a pitfall in pyrosequencing analyses.

Published in:

International Journal of Legal Medicine, 2022, v. 136, n. 1, p. 103, doi. 10.1007/s00414-021-02716-7

By:

Konrad, Helen;
Schäfer, Laura;
Sturm, Hannah;
Hördt, Lena;
Bajanowski, Thomas;
Poetsch, Micaela

Publication type:

Article

Potential forensic biogeographic application of diatom colony consistency analysis employing pyrosequencing profiles of the 18S rDNA V7 region.

Published in:

International Journal of Legal Medicine, 2018, v. 132, n. 6, p. 1611, doi. 10.1007/s00414-018-1849-x

By:

Zhao, Yuancun;
Chen, Xiaogang;
Yang, Yiwen;
Zhao, Xiaohong;
Zhang, Shu;
Gao, Zehua;
Fang, Ting;
Wang, Yufang;
Zhang, Ji

Publication type:

Article

RUCS: rapid identification of PCR primers for unique core sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3917, doi. 10.1093/bioinformatics/btx526

By:

Thomsen, Martin Christen Frølund;
Hasman, Henrik;
Westh, Henrik;
Kaya, Hülya;
Lund, Ole

Publication type:

Article

Amplicon identification using SparsE representation of multiplex PYROsequencing signal (AdvISER-M-PYRO): application to bacterial resistance genotyping.

Published in:

Bioinformatics, 2014, v. 30, n. 24, p. 3590, doi. 10.1093/bioinformatics/btu516

By:

Ambroise, Jérôme;
Deccache, Yann;
Irenge, Leonid;
Savov, Encho;
Robert, Annie;
Gala, Jean-Luc

Publication type:

Article

Characterization of Microbiota in Bronchiectasis Patients with Different Disease Severities.

Published in:

Journal of Clinical Medicine, 2018, v. 7, n. 11, p. 429, doi. 10.3390/jcm7110429

By:

Lee, Sang Hoon;
Lee, YeonJoo;
Park, Jong Sun;
Cho, Young-Jae;
Yoon, Ho Il;
Lee, Choon-Taek;
Lee, Jae Ho

Publication type:

Article

He Wānanga Whakarite: preparing Māori for surgical selection interviews.

Published in:

ANZ Journal of Surgery, 2021, v. 91, n. 6, p. 1143, doi. 10.1111/ans.16864

By:

Nicholls, Lincoln;
Parore, Nora;
Buckthought, Lance

Publication type:

Article

Nanopore 16S sequencing enhances the detection of bacterial meningitis after neurosurgery.

Published in:

Annals of Clinical & Translational Neurology, 2022, v. 9, n. 3, p. 312, doi. 10.1002/acn3.51517

By:

Jang, Yoonhyuk;
Kim, Seondeuk;
Kim, Narae;
Son, Hyoshin;
Ha, Eun Jin;
Koh, Eun Jung;
Phi, Ji Hoon;
Park, Chul‐Kee;
Kim, Jeong Eun;
Kim, Seung‐Ki;
Lee, Sang Kun;
Cho, Won‐Sang;
Moon, Jangsup;
Chu, Kon

Publication type:

Article

Analyses on K-ras mutations and fascin expression in patients with cardia cancer.

Published in:

Oncology Letters, 2019, v. 17, n. 2, p. 1807

By:

Wei, Li;
Chang, Haiyan;
Huo, Song

Publication type:

Article