Works matching AU Davenport, Karen

Results: 39
    1

    Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x
    By:
    • Kappler, Ulrike;
    • Davenport, Karen;
    • Beatson, Scott;
    • Lapidus, Alla;
    • Pan, Chongle;
    • Han, Cliff;
    • del Carmen Montero-Calasanz, Maria;
    • Land, Miriam;
    • Hauser, Loren;
    • Rohde, Manfred;
    • Göker, Markus;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    2
    3

    Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 514, doi. 10.4056/sigs.4938652
    By:
    • Reeve, Wayne;
    • Ballard, Ross;
    • Howieson, John;
    • Drew, Elizabeth;
    • Tian, Rui;
    • Bräu, Lambert;
    • Munk, Christine;
    • Davenport, Karen;
    • Chain, Patrick;
    • Goodwin, Lynne;
    • Pagani, Ioanna;
    • Huntemann, Marcel;
    • Mavrommatis, Konstantinos;
    • Pati, Amrita;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Kyrpides, Nikos
    Publication type:
    Article
    4

    Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 655, doi. 10.4056/sigs.4718645
    By:
    • Visser, Michael;
    • Parshina, Sofiya;
    • Alves, Joana;
    • Sousa, Diana;
    • Pereira, Inês;
    • Muyzer, Gerard;
    • Kuever, Jan;
    • Lebedinsky, Alexander;
    • Koehorst, Jasper;
    • Worm, Petra;
    • Plugge, Caroline;
    • Schaap, Peter;
    • Goodwin, Lynne;
    • Lapidus, Alla;
    • Kyrpides, Nikos;
    • Detter, Janine;
    • Woyke, Tanja;
    • Chain, Patrick;
    • Davenport, Karen;
    • Spring, Stefan
    Publication type:
    Article
    5

    Genome analysis of Desulfotomaculum gibsoniae strain Groll a highly versatile Gram-positive sulfate-reducing bacterium.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 821, doi. 10.4056/sigs.5209235
    By:
    • Kuever, Jan;
    • Visser, Michael;
    • Loeffler, Claudia;
    • Boll, Matthias;
    • Worm, Petra;
    • Sousa, Diana;
    • Plugge, Caroline;
    • Schaap, Peter;
    • Muyzer, Gerard;
    • Pereira, Ines;
    • Parshina, Sofiya;
    • Goodwin, Lynne;
    • Kyrpides, Nikos;
    • Detter, Janine;
    • Woyke, Tanja;
    • Chain, Patrick;
    • Davenport, Karen;
    • Rohde, Manfred;
    • Spring, Stefan;
    • Klenk, Hans-Peter
    Publication type:
    Article
    6

    Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 232, doi. 10.4056/sigs.4478252
    By:
    • Reeve, Wayne;
    • Drew, Elizabeth;
    • Ballard, Ross;
    • Melino, Vanessa;
    • Tian, Rui;
    • Meyer, Sofie;
    • Brau, Lambert;
    • Ninawi, Mohamed;
    • Daligault, Hajnalka;
    • Davenport, Karen;
    • Erkkila, Tracy;
    • Goodwin, Lynne;
    • Gu, Wei;
    • Munk, Christine;
    • Teshima, Hazuki;
    • Xu, Yan;
    • Chain, Patrick;
    • Kyrpides, Nikos
    Publication type:
    Article
    7
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    Genome sequence of Phaeobacter inhibens type strain (T5), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 334, doi. 10.4056/sigs.4448212
    By:
    • Dogs, Marco;
    • Voget, Sonja;
    • Teshima, Hazuki;
    • Petersen, Jörn;
    • Davenport, Karen;
    • Dalingault, Hajnalka;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Standfest, Sonja;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Klenk, Hans-Peter;
    • Göker, Markus
    Publication type:
    Article
    9

    Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 325, doi. 10.4056/sigs.3797438
    By:
    • Galardini, Marco;
    • Bazzicalupo, Marco;
    • Biondi, Emanuele;
    • Brambilla, Eveline;
    • Brilli, Matteo;
    • Bruce, David;
    • Chain, Patrick;
    • Chen, Amy;
    • Daligault, Hajnalka;
    • Davenport, Karen;
    • Deshpande, Shweta;
    • Detter, John;
    • Goodwin, Lynne;
    • Han, Cliff;
    • Han, James;
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Markowitz, Victor
    Publication type:
    Article
    10

    Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 359, doi. 10.4056/sigs.4348035
    By:
    • Khanna, Namita;
    • Ghosh, Ananta;
    • Huntemann, Marcel;
    • Deshpande, Shweta;
    • Han, James;
    • Chen, Amy;
    • Kyrpides, Nikos;
    • Mavrommatis, Kostas;
    • Szeto, Ernest;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Pagani, Ioanna;
    • Pati, Amrita;
    • Pitluck, Sam;
    • Nolan, Matt;
    • Woyke, Tanja;
    • Teshima, Hazuki;
    • Chertkov, Olga;
    • Daligault, Hajnalka;
    • Davenport, Karen
    Publication type:
    Article
    11
    12

    Genome sequence of the Leisingera aquimarina type strain (DSM 24565), a member of the marine Roseobacter clade rich in extrachromosomal elements.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 389, doi. 10.4056/sigs.3858183
    By:
    • Riedel, Thomas;
    • Teshima, Hazuki;
    • Petersen, Jörn;
    • Fiebig, Anne;
    • Davenport, Karen;
    • Daligault, Hajnalka;
    • Erkkila, Tracy;
    • Gu, Wei;
    • Munk, Christine;
    • Xu, Yan;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja
    Publication type:
    Article
    13

    Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 441, doi. 10.4056/sigs.4027757
    By:
    • Neupane, Saraswoti;
    • Goodwin, Lynne;
    • Högberg, Nils;
    • Kyrpides, Nikos;
    • Alström, Sadhna;
    • Bruce, David;
    • Quintana, Beverly;
    • Munk, Christine;
    • Daligault, Hajnalka;
    • Teshima, Hazuki;
    • Davenport, Karen;
    • Reitenga, Krista;
    • Green, Lance;
    • Chain, Patrick;
    • Erkkila, Tracy;
    • Gu, Wei;
    • Zhang, Xiaojing;
    • Xu, Yan;
    • Kunde, Yulia;
    • Chertkov, Olga
    Publication type:
    Article
    14

    Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 450, doi. 10.4056/sigs.383362
    By:
    • Freese, Heike;
    • Dalingault, Hajnalka;
    • Petersen, Jörn;
    • Pradella, Silke;
    • Davenport, Karen;
    • Teshima, Hazuki;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Brinkhoff, Thorsten;
    • Göker, Markus;
    • Overmann, Jörg;
    • Klenk, Hans-Peter
    Publication type:
    Article
    15

    Genome analysis of Desulfotomaculum kuznetsovii strain 17 reveals a physiological similarity with Pelotomaculum thermopropionicum strain SI.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 69, doi. 10.4056/sigs.3627141
    By:
    • Visser, Michael;
    • Worm, Petra;
    • Muyzer, Gerard;
    • Pereira, Inês;
    • Schaap, Peter;
    • Plugge, Caroline;
    • Kuever, Jan;
    • Parshina, Sofiya;
    • Nazina, Tamara;
    • Ivanova, Anna;
    • Bernier-Latmani, Rizlan;
    • Goodwin, Lynne;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Chain, Patrick;
    • Davenport, Karen;
    • Spring, Stefan;
    • Klenk, Hans-Peter;
    • Stams, Alfons
    Publication type:
    Article
    16

    Complete genome sequence of Thermovibrio ammonificans HB-1<sup>T</sup>, a thermophilic, chemolithoautotrophic bacterium isolated from a deep-sea hydrothermal vent.

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 82, doi. 10.4056/sigs.2856770
    By:
    • Giovannelli, Donato;
    • Ricci, Jessica;
    • Pírez-Rodríguez, Ileana;
    • Hügler, Michael;
    • O'Brien, Charles;
    • Keddis, Ramaydalis;
    • Grosche, Ashley;
    • Goodwin, Lynne;
    • Bruce, David;
    • Davenport, Karen W.;
    • Detter, Chris;
    • James Han;
    • Han, Shunsheng;
    • Ivanova, Natalia;
    • Land, Miriam L.;
    • Mikhailova, Natalia;
    • Nolan, Matt;
    • Pitluck, Sam;
    • Tapia, Roxanne;
    • Woyke, Tanja
    Publication type:
    Article
    17
    18

    Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093<sup>T</sup>).

    Published in:
    2012
    By:
    • Kappler, Ulrike;
    • Davenport, Karen;
    • Beatson, Scott;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Berry, Kerrie W.;
    • Del Rio, Tijana Glavina;
    • Hammon, Nancy;
    • Dalin, Eileen;
    • Tice, Hope;
    • Pitluck, Sam;
    • Richardson, Paul;
    • Bruce, David;
    • Goodwin, Lynne A.;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Detter, John C.;
    • Chang, Yun-juan;
    • Jeffries, Cynthia D.
    Publication type:
    Art Reproduction
    19

    Comparative genomic and phenotypic characterization of invasive non-typhoidal Salmonella isolates from Siaya, Kenya.

    Published in:
    PLoS Neglected Tropical Diseases, 2021, v. 15, n. 2, p. 1, doi. 10.1371/journal.pntd.0008991
    By:
    • Kubicek-Sutherland, Jessica Z.;
    • Xie, Gary;
    • Shakya, Migun;
    • Dighe, Priya K.;
    • Jacobs, Lindsey L.;
    • Daligault, Hajnalka;
    • Davenport, Karen;
    • Stromberg, Loreen R.;
    • Stromberg, Zachary R.;
    • Cheng, Qiuying;
    • Kempaiah, Prakasha;
    • Ong'echa, John Michael;
    • Otieno, Vincent;
    • Raballah, Evans;
    • Anyona, Samuel;
    • Ouma, Collins;
    • Chain, Patrick S. G.;
    • Perkins, Douglas J.;
    • Mukundan, Harshini;
    • McMahon, Benjamin H.
    Publication type:
    Article
    20

    Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258 Klebsiella pneumoniae Strains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones.

    Published in:
    Genome Biology & Evolution, 2016, v. 8, n. 6, p. 2036, doi. 10.1093/gbe/evw135
    By:
    • Ramirez, María Soledad;
    • Gang Xie;
    • Traglia, German M.;
    • Johnson, Shannon L.;
    • Davenport, Karen W.;
    • Van Duin, David;
    • Ramazani, Azam;
    • Perez, Federico;
    • Jacobs, Michael R.;
    • Sherratt, David J.;
    • Bonomo, Robert A.;
    • Chain, Patrick S. G.;
    • Tolmasky, Marcelo E.
    Publication type:
    Article
    21
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    Microbial Diversity in Bushmeat Samples Recovered from the Serengeti Ecosystem in Tanzania.

    Published in:
    Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-53969-7
    By:
    • Katani, Robab;
    • Schilling, Megan A.;
    • Lyimo, Beatus;
    • Tonui, Triza;
    • Cattadori, Isabella M.;
    • Eblate, Ernest;
    • Martin, Andimile;
    • Estes, Anna B.;
    • Buza, Teresia;
    • Rentsch, Dennis;
    • Davenport, Karen W.;
    • Hovde, Blake T.;
    • Lyimo, Samson;
    • Munuo, Lydia;
    • Stomeo, Francesca;
    • Tiambo, Christian;
    • Radzio-Basu, Jessica;
    • Mosha, Fausta;
    • Hudson, Peter J.;
    • Buza, Joram J.
    Publication type:
    Article
    24
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    A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.).

    Published in:
    DNA Research, 2023, v. 30, n. 1, p. 1, doi. 10.1093/dnares/dsac033
    By:
    • McGrath, J Mitchell;
    • Funk, Andrew;
    • Galewski, Paul;
    • Ou, Shujun;
    • Townsend, Belinda;
    • Davenport, Karen;
    • Daligault, Hajnalka;
    • Johnson, Shannon;
    • Lee, Joyce;
    • Hastie, Alex;
    • Darracq, Aude;
    • Willems, Glenda;
    • Barnes, Steve;
    • Liachko, Ivan;
    • Sullivan, Shawn;
    • Koren, Sergey;
    • Phillippy, Adam;
    • Wang, Jie;
    • Liu, Tiffany;
    • Pulman, Jane
    Publication type:
    Article
    27
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    33

    National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource.

    Published in:
    Nucleic Acids Research, 2022, v. 50, n. D1, p. D828, doi. 10.1093/nar/gkab990
    By:
    • Eloe-Fadrosh, Emiley A;
    • Ahmed, Faiza;
    • Anubhav;
    • Babinski, Michal;
    • Baumes, Jeffrey;
    • Borkum, Mark;
    • Bramer, Lisa;
    • Canon, Shane;
    • Christianson, Danielle S;
    • Corilo, Yuri E;
    • Davenport, Karen W;
    • Davis, Brandon;
    • Drake, Meghan;
    • Duncan, William D;
    • Flynn, Mark C;
    • Hays, David;
    • Hu, Bin;
    • Huntemann, Marcel;
    • Kelliher, Julia;
    • Lebedeva, Sofya
    Publication type:
    Article
    34
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    38

    Genomic Comparison of Escherichia coli O104:H4 Isolates from 2009 and 2011 Reveals Plasmid, and Prophage Heterogeneity, Including Shiga Toxin Encoding Phage stx2.

    Published in:
    PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0048228
    By:
    • Ahmed, Sanaa A.;
    • Awosika, Joy;
    • Baldwin, Carson;
    • Bishop-Lilly, Kimberly A.;
    • Biswas, Biswajit;
    • Broomall, Stacey;
    • Chain, Patrick S. G.;
    • Chertkov, Olga;
    • Chokoshvili, Otar;
    • Coyne, Susan;
    • Davenport, Karen;
    • Detter, J. Chris;
    • Dorman, William;
    • Erkkila, Tracy H.;
    • Folster, Jason P.;
    • Frey, Kenneth G.;
    • George, Matroner;
    • Gleasner, Cheryl;
    • Henry, Matthew;
    • Hill, Karen K.
    Publication type:
    Article
    39

    Widespread bacterial diversity within the bacteriome of fungi.

    Published in:
    Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02693-y
    By:
    • Robinson, Aaron J.;
    • House, Geoffrey L.;
    • Morales, Demosthenes P.;
    • Kelliher, Julia M.;
    • Gallegos-Graves, La Verne;
    • LeBrun, Erick S.;
    • Davenport, Karen W.;
    • Palmieri, Fabio;
    • Lohberger, Andrea;
    • Bregnard, Danaé;
    • Estoppey, Aislinn;
    • Buffi, Matteo;
    • Paul, Christophe;
    • Junier, Thomas;
    • Hervé, Vincent;
    • Cailleau, Guillaume;
    • Lupini, Simone;
    • Nguyen, Hang N.;
    • Zheng, Amy O.;
    • Gimenes, Luciana Jandelli
    Publication type:
    Article