Works matching DE "PHYLOGENETIC models"

Results: 929

Characterization of Dickeya and Pectobacterium strains obtained from diseased potato plants in different climatic conditions of Norway and Poland.

Published in:

European Journal of Plant Pathology, 2017, v. 148, n. 4, p. 839, doi. 10.1007/s10658-016-1140-2

By:

Dees, Merete;
Lebecka, Renata;
Perminow, Juliana;
Czajkowski, Robert;
Grupa, Anna;
Motyka, Agata;
Zoledowska, Sabina;
Śliwka, Jadwiga;
Lojkowska, Ewa;
Brurberg, May

Publication type:

Article

mtCOI successfully diagnoses the four main plant-parasitic Aphelenchoides species (Nematoda: Aphelenchoididae) and supports a multiple origin of plant-parasitism in this paraphyletic genus.

Published in:

European Journal of Plant Pathology, 2017, v. 148, n. 4, p. 853, doi. 10.1007/s10658-016-1141-1

By:

Sánchez-Monge, Alcides;
Janssen, Toon;
Fang, Yiwu;
Couvreur, Marjolein;
Karssen, Gerrit;
Bert, Wim

Publication type:

Article

Bounds for phylogenetic network space metrics.

Published in:

Journal of Mathematical Biology, 2018, v. 76, n. 5, p. 1229, doi. 10.1007/s00285-017-1171-0

By:

Francis, Andrew;
Huber, Katharina T.;
Moulton, Vincent;
Wu, Taoyang

Publication type:

Article

The combinatorics of discrete time-trees: theory and open problems.

Published in:

Journal of Mathematical Biology, 2018, v. 76, n. 5, p. 1101, doi. 10.1007/s00285-017-1167-9

By:

Gavryushkin, Alex;
Whidden, Chris;
Matsen, Frederick A.

Publication type:

Article

Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants.

Published in:

Journal of Mathematical Biology, 2017, v. 75, n. 6/7, p. 1619, doi. 10.1007/s00285-017-1129-2

By:

Sumner, Jeremy;
Taylor, Amelia;
Holland, Barbara;
Jarvis, Peter

Publication type:

Article

Identifiability and inference of non-parametric rates-across-sites models on large-scale phylogenies.

Published in:

Journal of Mathematical Biology, 2013, v. 67, n. 4, p. 767, doi. 10.1007/s00285-012-0571-4

By:

Mossel, Elchanan;
Roch, Sebastien

Publication type:

Article

Genetic characteristics of 19 STRs in Chinese Uzbek ethnic and its phylogenetic relationships with other 24 populations.

Published in:

International Journal of Legal Medicine, 2018, v. 132, n. 3, p. 729, doi. 10.1007/s00414-017-1717-0

By:

Wei, Yuanyuan;
Kong, Tingting;
Jin, Xiaoye;
Cui, Wei;
Mu, Yuling;
Dong, Qian;
Chen, Chong;
Guo, Yuxin;
Zhu, Bofeng;
Chen, Jiangang

Publication type:

Article

Forensic characteristics and phylogenetic analyses of the Chinese Yi population via 19 X-chromosomal STR loci.

Published in:

International Journal of Legal Medicine, 2017, v. 131, n. 5, p. 1243, doi. 10.1007/s00414-017-1563-0

By:

He, Guanglin;
Li, Ye;
Zou, Xing;
Li, Ping;
Chen, Pengyu;
Song, Feng;
Gao, Tianzhen;
Liao, Miao;
Yan, Jing;
Wu, Jin

Publication type:

Article

Competition in imaginary worlds.

Published in:

Nature, 1985, p. 228, doi. 10.1038/314228b0

By:

Harvey, Paul H.;
May, Robert M.

Publication type:

Article

Benefits, costs and taxonomic distribution of marine phytoplankton body size.

Published in:

Journal of Plankton Research, 2017, v. 39, n. 3, p. 494, doi. 10.1093/plankt/fbw071

By:

Sommer, Ulrich;
Charalampous, Evangelia;
Genitsaris, Savvas;
Moustaka-Gouni, Maria

Publication type:

Article

VICTOR: genome-based phylogeny and classification of prokaryotic viruses.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3396, doi. 10.1093/bioinformatics/btx440

By:

Meier-Kolthoff, Jan P.;
Göker, Markus

Publication type:

Article

EDEN: evolutionary dynamics within environments.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3292, doi. 10.1093/bioinformatics/btx394

By:

Münch, Philipp C.;
Stecher, Bärbel;
McHardy, Alice C.

Publication type:

Article

PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2946, doi. 10.1093/bioinformatics/btx324

By:

Kreft, Łukasz;
Botzki, Alexander;
Coppens, Frederik;
Vandepoele, Klaas;
Van Bel, Michiel

Publication type:

Article

False discovery rate control incorporating phylogenetic tree increases detection power in microbiome-wide multiple testing.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2873, doi. 10.1093/bioinformatics/btx311

By:

Jian Xiao;
Hongyuan Cao;
Jun Chen

Publication type:

Article

IcyTree: rapid browser-based visualization for phylogenetic trees and networks.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2392, doi. 10.1093/bioinformatics/btx155

By:

Vaughan, Timothy G.

Publication type:

Article

Phyx: phylogenetic tools for unix.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1886, doi. 10.1093/bioinformatics/btx063

By:

Brown, Joseph W.;
Walker, Joseph F.;
Smith, Stephen A.

Publication type:

Article

Monte Carlo algorithms for Brownian phylogenetic models.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3020, doi. 10.1093/bioinformatics/btu485

By:

Horvilleur, Benjamin;
Lartillot, Nicolas

Publication type:

Article

Integrating Phylogenetics and Morphology to Study Diversification and Species Limits in Madagascar's Tenrecs (Tenrecidae).

Published in:

2018

By:

Everson, Kathryn M.;
Olson, Link

Publication type:

Abstract

Climatic Niche Conservatism and Ecological Diversification in the Holarctic Cold-Dwelling Butterfly Genus Erebia.

Published in:

Insect Systematics & Diversity, 2023, v. 7, n. 1, p. 1, doi. 10.1093/isd/ixad002

By:

Klečková, Irena;
Klečka, Jan;
Fric, Zdeněk Faltýnek;
Česánek, Martin;
Dutoit, Ludovic;
Pellissier, Loïc;
Matos-Maraví, Pável

Publication type:

Article

Analysis of RNA-Seq, DNA Target Enrichment, and Sanger Nucleotide Sequence Data Resolves Deep Splits in the Phylogeny of Cuckoo Wasps (Hymenoptera: Chrysididae).

Published in:

Insect Systematics & Diversity, 2021, v. 5, n. 1, p. 1, doi. 10.1093/isd/ixaa018

By:

Pauli, Thomas;
Meusemann, Karen;
Kukowka, Sandra;
Sann, Manuela;
Donath, Alexander;
Mayer, Christoph;
Oeyen, Jan Philip;
Ballesteros, Yolanda;
Berg, Alexander;
van den Berghe, Eric;
Escalona, Hermes E;
Guglielmino, Adalgisa;
Niehuis, Manfred;
Olmi, Massimo;
Podsiadlowski, Lars;
Polidori, Carlo;
Rond, Jeroen de;
Rosa, Paolo;
Schmitt, Thomas;
Strumia, Franco

Publication type:

Article

Eolacertidae: a new extinct clade of lizards from the Palaeogene; with comments on the origin of the dominant European reptile group - Lacertidae.

Published in:

Historical Biology, 2018, v. 30, n. 7, p. 994, doi. 10.1080/08912963.2017.1327530

By:

Čerňanský, Andrej;
Smith, Krister T.

Publication type:

Article

A new species of Plesiodimylus (Dimylidae, Eulipotyphla, Mammalia) from the Early Miocene of Spain.

Published in:

Historical Biology, 2018, v. 30, n. 3, p. 360, doi. 10.1080/08912963.2017.1289519

By:

Crespo, Vicente D.;
Furió, Marc;
Ruiz-Sánchez, Francisco Javier;
Montoya, Plini

Publication type:

Article

Metabolome-Wide, Phylogenetically Controlled Comparison Indicates Higher Phenolic Diversity in Tropical Tree Species.

Published in:

Plants (2223-7747), 2021, v. 10, n. 3, p. 554, doi. 10.3390/plants10030554

By:

Peguero, Guille;
Gargallo-Garriga, Albert;
Maspons, Joan;
Klem, Karel;
Urban, Otmar;
Sardans, Jordi;
Peñuelas, Josep;
Ghirardo, Andrea;
Minassi, Alberto

Publication type:

Article

Copy Number Variation of Transposable Elements in Thinopyrum intermedium and Its Diploid Relative Species.

Published in:

Plants (2223-7747), 2020, v. 9, n. 1, p. 1, doi. 10.3390/plants9010015

By:

Divashuk, Mikhail G.;
Karlov, Gennady I.;
Kroupin, Pavel Yu.

Publication type:

Article

Genomic Survey, Characterization, and Expression Profile Analysis of the SBP Genes in Pineapple (Ananas comosus L.).

Published in:

International Journal of Genomics, 2017, p. 1, doi. 10.1155/2017/1032846

By:

Ali, Hina;
Liu, Yanhui;
Azam, Syed Muhammad;
Rahman, Zia ur;
Priyadarshani, S. V. G. N.;
Li, Weimin;
Huang, Xinyu;
Hu, Bingyan;
Xiong, Junjie;
Ali, Umair;
Qin, Yuan

Publication type:

Article

GOING BACK IN GENES.

Published in:

Biologist, 2017, v. 64, n. 2, p. 20

By:

Martin, William F.

Publication type:

Article

2b or not 2b? 2bRAD is an effective alternative to ddRAD for phylogenomics.

Published in:

Ecology & Evolution (20457758), 2023, v. 13, n. 3, p. 1, doi. 10.1002/ece3.9842

By:

Chambers, E. Anne;
Tarvin, Rebecca D.;
Santos, Juan C.;
Ron, Santiago R.;
Betancourth‐Cundar, Mileidy;
Hillis, David M.;
Matz, Mikhail V.;
Cannatella, David C.

Publication type:

Article

Determinants of natal dispersal distances in North American birds.

Published in:

Ecology & Evolution (20457758), 2023, v. 13, n. 2, p. 1, doi. 10.1002/ece3.9789

By:

Chu, Jonathan J.;
Claramunt, Santiago

Publication type:

Article

Anguimorpha as a model group for studying the comparative heart morphology among Lepidosauria: Evolutionary window on the ventricular septation.

Published in:

Ecology & Evolution (20457758), 2022, v. 12, n. 11, p. 1, doi. 10.1002/ece3.9476

By:

Gregorovicova, Martina;
Bartos, Martin;
Jensen, Bjarke;
Janacek, Jiri;
Minne, Bryan;
Moravec, Jiri;
Sedmera, David

Publication type:

Article

Sexual selection, feather wear, and time constraints on the pre‐basic molt explain the acquisition of the pre‐alternate molt in European passerines.

Published in:

Ecology & Evolution (20457758), 2022, v. 12, n. 9, p. 1, doi. 10.1002/ece3.9260

By:

Cuervo, José J.;
Morales, Judith;
Soler, Juan J.;
Moreno, Juan

Publication type:

Article

Environmental correlates of phenotypic evolution in ecologically diverse Liolaemus lizards.

Published in:

Ecology & Evolution (20457758), 2022, v. 12, n. 6, p. 1, doi. 10.1002/ece3.9009

By:

Edwards, Danielle L.;
Avila, Luciano J.;
Martinez, Lorena;
Sites, Jack W.;
Morando, Mariana

Publication type:

Article

Large brain size is associated with low extra‐pair paternity across bird species.

Published in:

Ecology & Evolution (20457758), 2021, v. 11, n. 19, p. 13601, doi. 10.1002/ece3.8087

By:

Chen, Min;
Li, Guopan;
Liu, Jinlong;
Li, Shaobin

Publication type:

Article

Population genetic structure and evolution of Batesian mimicry in Papilio polytes from the Ryukyu Islands, Japan, analyzed by genotyping‐by‐sequencing.

Published in:

Ecology & Evolution (20457758), 2021, v. 11, n. 2, p. 872, doi. 10.1002/ece3.7092

By:

Sato, Yukuto;
Tsurui‐Sato, Kaori;
Katoh, Mitsuho;
Kimura, Ryosuke;
Tatsuta, Haruki;
Tsuji, Kazuki

Publication type:

Article

Dietary specialization is conditionally associated with increased ant predation risk in a temperate forest caterpillar community.

Published in:

Ecology & Evolution (20457758), 2019, v. 9, n. 21, p. 12099, doi. 10.1002/ece3.5662

By:

Singer, Michael S.;
Clark, Robert E.;
Johnson, Emily R.;
Lichter‐Marck, Isaac H.;
Mooney, Kailen A.;
Whitney, Kenneth D.

Publication type:

Article

Genetic diversity in fishes is influenced by habitat type and life‐history variation.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 23, p. 12022, doi. 10.1002/ece3.4661

By:

Martinez, Alexander S.;
Willoughby, Janna R.;
Christie, Mark R.

Publication type:

Article

Dissecting a potential spandrel of adaptive radiation: Body depth and pectoral fin ecomorphology coevolve in Lake Malawi cichlid fishes.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 23, p. 11945, doi. 10.1002/ece3.4651

By:

Hulsey, Christopher D.;
Holzman, Roi;
Meyer, Axel

Publication type:

Article

Spatial scale‐dependent phylogenetic signal in species distributions along geographic and elevation gradients in a mountainous rangeland.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 21, p. 10364, doi. 10.1002/ece3.4293

By:

Pashirzad, Maral;
Ejtehadi, Hamid;
Vaezi, Jamil;
Shefferson, Richard P.

Publication type:

Article

DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 20, p. 10023, doi. 10.1002/ece3.4425

By:

Ma, Zhanshan (sam)

Publication type:

Article

Biodiversity explains maximum variation in productivity under experimental warming, nitrogen addition, and grazing in mountain grasslands.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 20, p. 10094, doi. 10.1002/ece3.4483

By:

Liu, Jiajia;
Liu, Detuan;
Xu, Kun;
Gao, Lian‐ming;
Ge, Xue‐jun;
Burgess, Kevin S.;
Cadotte, Marc W.

Publication type:

Article

Parapatric subspecies of Macaca assamensis show a marginal overlap in their predicted potential distribution: Some elaborations for modern conservation management.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 19, p. 9712, doi. 10.1002/ece3.4405

By:

Suwal, Madan K.;
Huettmann, Falk;
Regmi, Ganga Ram;
Vetaas, Ole R.

Publication type:

Article

Are dominant plant species more susceptible to leaf‐mining insects? A case study at Saihanwula Nature Reserve, China.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 15, p. 7633, doi. 10.1002/ece3.4284

By:

Dai, Xiaohua;
Long, Chengpeng;
Xu, Jiasheng;
Guo, Qingyun;
Zhang, Wei;
Zhang, Zhihong;
Bater

Publication type:

Article

Functional and phylogenetic diversity determine woody productivity in a temperate forest.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 5, p. 2395, doi. 10.1002/ece3.3857

By:

Hao, Minhui;
Zhang, Chunyu;
Zhao, Xiuhai;
Von Gadow, Klaus

Publication type:

Article

Infection of Chick Chorioallantoic Membrane (CAM) as a Model for the Pathogenesis of Cryptococcus gattii.

Published in:

Medical Mycology Journal, 2018, v. 59, n. 2, p. E25, doi. 10.3314/mmj.17-00018

By:

Nnadi, Emmanuel Nnaemeka;
Enweani, Ifeoma Bessie;
Ayanbimpe, Grace Mebi

Publication type:

Article

Discovery of two novel Torque Teno viruses in Callithrix penicillata provides insights on Anelloviridae diversification dynamics.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.1002963

By:

Calvano Cosentino, Matheus Augusto;
D'arc, Mirela;
Rebello Moreira, Filipe Romero;
de Faria Cavalcante, Liliane Tavares;
Mouta, Ricardo;
Coimbra, Amanda;
Bittencourt Schiffler, Francine;
dos Santos Miranda, Thamiris;
Medeiros, Gabriel;
Dias, Cecilia A.;
Souza, Antonizete R.;
Henriques Tavares, Maria Clotilde;
Tanuri, Amilcar;
Alves Soares, Marcelo;
Andrade dos Santos, André Felipe

Publication type:

Article

High sequence variation in the exon 10 of TSHR gene is associated with flightless-domestic geese.

Published in:

3 Biotech, 2018, v. 8, n. 8, p. 1, doi. 10.1007/s13205-018-1371-3

By:

Peng, Qiong;
Wang, Ye;
Hu, Yaodong;
Lan, Dan;
He, Daqian;
Li, Siming;
Lin, Zhenping;
Liu, Yiping

Publication type:

Article

Computational-based structural, functional and phylogenetic analysis of Enterobacter phytases.

Published in:

3 Biotech, 2018, v. 8, n. 6, p. 1, doi. 10.1007/s13205-018-1287-y

By:

Pramanik, Krishnendu;
Kundu, Shreyasi;
Banerjee, Sandipan;
Ghosh, Pallab Kumar;
Maiti, Tushar Kanti

Publication type:

Article

molecular evolution of C 4 photosynthesis: opportunities for understanding and improving the world's most productive plants.

Published in:

Journal of Experimental Botany, 2019, v. 70, n. 3, p. 795, doi. 10.1093/jxb/ery416

By:

Niklaus, Michael;
Kelly, Steven

Publication type:

Article

A BAHD neofunctionalization promotes tetrahydroxycinnamoyl spermine accumulation in the pollen coat of the Asteraceae family.

Published in:

Journal of Experimental Botany, 2018, v. 69, n. 22, p. 5355, doi. 10.1093/jxb/ery320

By:

Delporte, Marianne;
Bernard, Guillaume;
Legrand, Guillaume;
Hielscher, Björn;
Lanoue, Arnaud;
Molinié, Roland;
Rambaud, Caroline;
Mathiron, David;
Besseau, Sébastien;
Linka, Nicole

Publication type:

Article

Phylogenetic tree-informed microRNAome analysis uncovers conserved and lineage-specific miRNAs in Camellia during floral organ development.

Published in:

Journal of Experimental Botany, 2016, v. 67, n. 9, p. 2641, doi. 10.1093/jxb/erw095

By:

Jiangying Wang;
Weixin Liu;
Zhen Ying;
Liping Liu;
Hengfu Yin;
Zhengqi Fan;
Xinlei Li;
Bin Wu;
Jiyuan Li;
Zhongchi Liu

Publication type:

Article

Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-018-0144-1

By:

Neumann, Pavel;
Novák, Petr;
Hoštáková, Nina;
Macas, Jiří

Publication type:

Article