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Computational and experimental investigation of DNA repair protein photolyase interactions with low molecular weight drugs.
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- Journal of Molecular Recognition, 2013, v. 26, n. 7, p. 297, doi. 10.1002/jmr.2258
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- Article
Molecular dynamics simulations provide molecular insights into the role of HLA‐B51 in Behçet's disease pathogenesis.
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- Chemical Biology & Drug Design, 2020, v. 96, n. 1, p. 644, doi. 10.1111/cbdd.13658
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- Article
A small molecule identified through an in silico screen inhibits Aurora B-INCENP interaction.
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- Chemical Biology & Drug Design, 2016, v. 88, n. 6, p. 783, doi. 10.1111/cbdd.12816
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- Article
A simple derivation of the exponent γ for Gaussian chains with excluded volume.
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- Macromolecular Theory & Simulations, 1995, v. 4, n. 2, p. 245, doi. 10.1002/mats.1995.040040202
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- Article
Computer simulations of two-dimensional trifunctional bimodal networks.
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- Macromolecular Theory & Simulations, 1994, v. 3, n. 1, p. 151, doi. 10.1002/mats.1994.040030112
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- Article
DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W417, doi. 10.1093/nar/gkq396
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- Article
The effects of social media news that users trusted and verified on anxiety level and disease control perception in COVID-19 pandemic.
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- Klinik Psikiyatri Dergisi, 2021, v. 24, n. 1, p. 23, doi. 10.5505/kpd.2020.69772
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- Article
Dynamic correlations: exact and approximate methods for mutual information.
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- Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae076
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- Article
Prediction of allosteric communication pathways in proteins.
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- Bioinformatics, 2022, v. 38, n. 14, p. 3590, doi. 10.1093/bioinformatics/btac380
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- Article
Competitive hydrogen bonding in aspirin-aspirin and aspirin-leucine interactions.
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- Turkish Journal of Chemistry, 2012, v. 36, n. 3, p. 383, doi. 10.3906/kim-1112-16
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- Article
In silico design of novel and highly selective lysine-specific histone demethylase inhibitors.
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- Turkish Journal of Chemistry, 2011, v. 35, n. 4, p. 523, doi. 10.3906/kim-1102-985
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- Article
Intrinsic K-Ras dynamics: A novel molecular dynamics data analysis method shows causality between residue pair motions.
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- Scientific Reports, 2016, p. 37012, doi. 10.1038/srep37012
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- Article
MATHEMATICAL MODELING OF BEHÇET'S DISEASE: A DYNAMICAL SYSTEMS APPROACH.
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- Journal of Biological Systems, 2015, v. 23, n. 2, p. 231, doi. 10.1142/S0218339015500126
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- Article
A Comparative Molecular Dynamics Study of Methylation State Specificity of JMJD2A.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024664
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- Article
Molecular Recognition of H3/H4 Histone Tails by the Tudor Domains of JMJD2A: A Comparative Molecular Dynamics Simulations Study.
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- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0014765
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- Article
Identification of Ligand Binding Sites of Proteins Using the Gaussian Network Model.
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- PLoS ONE, 2011, v. 6, n. 1, p. 1, doi. 10.1371/journal.pone.0016474
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- Article
Prediction of Optimal Folding Routes of Proteins That Satisfy the Principle of Lowest Entropy Loss: Dynamic Contact Maps and Optimal Control.
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- PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013275
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- Article
VitAL: Viterbi Algorithm for de novo Peptide Design.
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- PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0010926
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- Article
Universal features of fluctuations in globular proteins.
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- Proteins, 2016, v. 84, n. 6, p. 721, doi. 10.1002/prot.25032
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- Article
Effects of ligand binding upon flexibility of proteins.
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- Proteins, 2015, v. 83, n. 5, p. 805, doi. 10.1002/prot.24785
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- Article
Mode coupling points to functionally important residues in myosin II.
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- Proteins, 2014, v. 82, n. 9, p. 1777, doi. 10.1002/prot.24531
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- Article
A fast approximate method of identifying paths of allosteric communication in proteins.
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- Proteins, 2013, v. 81, n. 7, p. 1097, doi. 10.1002/prot.24284
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- Article
Quasi-harmonic fluctuations of two bound peptides.
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- Proteins, 2012, v. 80, n. 12, p. 2769, doi. 10.1002/prot.24160
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- Article
Computational basis of knowledge-based conformational probabilities derived from local- and long-range interactions in proteins.
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- Proteins, 2007, v. 66, n. 1, p. 29, doi. 10.1002/prot.21206
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- Article
Understanding the recognition of protein structural classes by amino acid composition.
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- Proteins, 1997, v. 29, n. 2, p. 172, doi. 10.1002/(SICI)1097-0134(199710)29:2<172::AID-PROT5>3.0.CO;2-F
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- Article
Cyclophilin40 isomerase activity is regulated by a temperature-dependent allosteric interaction with Hsp90.
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- Bioscience Reports, 2015, v. 35, n. 5, p. 1, doi. 10.1042/BSR20150124
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- Article
Aggregation of Fillers Blended into Random Elastomeric Networks: Theory and Comparison with Experiments.
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- Macromolecular Chemistry & Physics, 2006, v. 207, n. 16, p. 1515, doi. 10.1002/macp.200600185
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- Article
5‐Fluoro/(trifluoromethoxy)‐2‐indolinone derivatives with anti‐interleukin‐1 activity.
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- Archiv der Pharmazie, 2023, v. 356, n. 12, p. 1, doi. 10.1002/ardp.202300217
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- Article
Reducing Virulence and Biofilm of Pseudomonas aeruginosa by Potential Quorum Sensing Inhibitor Carotenoid: Zeaxanthin.
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- Microbial Ecology, 2017, v. 74, n. 2, p. 466, doi. 10.1007/s00248-017-0949-3
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- Article
Oncogenic G12D mutation alters local conformations and dynamics of K-Ras.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-48029-z
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- Article
Predicting Important Residues and Interaction Pathways in Proteins Using Gaussian Network Model: Binding and Stability of HLA Proteins.
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- PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000845
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- Article
Diagnostic Transitions from Primary Psychiatric Disorders to Underlying Medical Conditions: A 5-Year Retrospective Survey from a University Hospital Sample.
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- Alpha Psychiatry, 2024, v. 25, n. 2, p. 226, doi. 10.5152/alphapsychiatry.2024.231274
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- Article
Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin.
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- PLoS Computational Biology, 2017, v. 13, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005319
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- Article
ModiBodies: A computational method for modifying nanobodies in nanobody-antigen complexes to improve binding affinity and specificity.
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- Journal of Biological Physics, 2020, v. 46, n. 2, p. 189, doi. 10.1007/s10867-020-09548-3
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- Article
Targeting mitochondrial DNA polymerase gamma for selective inhibition of MLH1 deficient colon cancer growth.
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- PLoS ONE, 2022, v. 17, n. 6, p. 1, doi. 10.1371/journal.pone.0268391
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- Article
The elastic net algorithm and protein structure prediction.
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- Journal of Computational Chemistry, 2002, v. 23, n. 1, p. 77, doi. 10.1002/jcc.1158
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- Article
Effects of timolol treatment on pancreatic antioxidant enzymes in streptozotocin-induced diabetic rats: An experimental and computational study.
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- Journal of Medical Biochemistry, 2019, v. 38, n. 3, p. 306, doi. 10.2478/jomb-2018-0034
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- Article
Structural cooperativity in histone H3 tail modifications.
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- Protein Science: A Publication of the Protein Society, 2011, v. 20, n. 12, p. 1982, doi. 10.1002/pro.745
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- Article
Identification of kinetically hot residues in proteins.
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- Protein Science: A Publication of the Protein Society, 1998, v. 7, n. 12, p. 2522, doi. 10.1002/pro.5560071205
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- Article
Dynamically driven correlations in elastic net models reveal sequence of events and causality in proteins.
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- Proteins, 2024, v. 92, n. 9, p. 1113, doi. 10.1002/prot.26697
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- Article
Synergy and anti‐cooperativity in allostery: Molecular dynamics study of WT and oncogenic KRAS‐RGL1.
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- Proteins, 2024, v. 92, n. 5, p. 665, doi. 10.1002/prot.26657
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- Article
Fine tuning rigid body docking results using the Dreiding force field: A computational study of 36 known nanobody‐protein complexes.
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- Proteins, 2023, v. 91, n. 10, p. 1417, doi. 10.1002/prot.26529
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- Article
Mutual information analysis of mutation, nonlinearity, and triple interactions in proteins.
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- Proteins, 2023, v. 91, n. 1, p. 121, doi. 10.1002/prot.26415
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- Article
A computational model for controlling conformational cooperativity and function in proteins.
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- Proteins, 2018, v. 86, n. 9, p. 1001, doi. 10.1002/prot.25535
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- Article
Causality, transfer entropy, and allosteric communication landscapes in proteins with harmonic interactions.
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- Proteins, 2017, v. 85, n. 6, p. 1056, doi. 10.1002/prot.25272
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- Article
İslam Felsefesi Çalışmalarında Yöntem ve Düşünce Tarihi Yazımı: Tashihçi Gazzâlî Araştırmalarından Hareketle Bir Değerlendirme.
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- Journal of Islamic Review / İslam Tetkikleri Dergisi, 2022, v. 12, n. 2, p. 779, doi. 10.26650/iuitd.2022.1117151
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- Article
Mianserin-Induced Peripheral Edema and Review of the Literature.
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- Psychiatric Annals, 2022, v. 52, n. 5, p. 213, doi. 10.3928/00485713-20220427-01
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- Article
Unified Modeling of Familial Mediterranean Fever and Cryopyrin Associated Periodic Syndromes.
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- Computational & Mathematical Methods in Medicine, 2015, v. 2015, p. 1, doi. 10.1155/2015/893507
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- Article