Works matching DE "EUKARYOTE phylogeny"

Results: 78

RNA silencing suppression by plant pathogens: defence, counter-defence and counter-counter-defence.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 11, p. 745, doi. 10.1038/nrmicro3120

By:

Pumplin, Nathan;
Voinnet, Olivier

Publication type:

Article

An 18S rRNA Workflow for Characterizing Protists in Sewage, with a Focus on Zoonotic Trichomonads.

Published in:

Microbial Ecology, 2017, v. 74, n. 4, p. 923, doi. 10.1007/s00248-017-0996-9

By:

Maritz, Julia;
Rock, Tara;
Joseph, Susan;
Carlton, Jane;
Rogers, Krysta;
Liu, Nicole;
Land, Kirkwood

Publication type:

Article

Carcass mass has little influence on the structure of gravesoil microbial communities.

Published in:

International Journal of Legal Medicine, 2016, v. 130, n. 1, p. 253, doi. 10.1007/s00414-015-1206-2

By:

Weiss, Sophie;
Carter, David;
Metcalf, Jessica;
Knight, Rob

Publication type:

Article

Phylogenetic diversity of eukaryotic marine microbial plankton on the Scotian Shelf Northwestern Atlantic Ocean.

Published in:

Journal of Plankton Research, 2014, v. 36, n. 2, p. 344, doi. 10.1093/plankt/fbt123

By:

Dasilva, Cindy R.;
Lovejoy, Connie;
Li, William K.W.

Publication type:

Article

MicroRNA-877 acts as a tumor suppressor by directly targeting eEF2K in renal cell carcinoma.

Published in:

Oncology Letters, 2016, v. 11, n. 2, p. 1474, doi. 10.3892/ol.2015.4072

By:

QIANQIAN SHI;
XIANLIN XU;
QING LIU;
FENGBAO LUO;
JIAN SHI;
XIAOZHOU HE

Publication type:

Article

Eukaryote DIRS1-like retrotransposons: an overview.

Published in:: BMC Genomics, 2011, v. 12, n. Suppl 2, p. 621, doi. 10.1186/1471-2164-12-621
Publication type:: Article

Morphological and Molecular Characterization of a New Trichuris Species (Nematoda- Trichuridae), and Phylogenetic Relationships of Trichuris Species of Cricetid Rodents from Argentina.

Published in:

PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112069

By:

Robles, María del Rosario;
Cutillas, Cristina;
Panei, Carlos Javier;
Callejón, Rocío

Publication type:

Article

In Silico Prediction and Analysis of Caenorhabditis EFhand Containing Proteins.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036770

By:

Kumar, Manish;
Ahmad, Shadab;
Ahmad, Ejaz;
Saifi, Muheet Alam;
Khan, Rizwan Hasan

Publication type:

Article

Eukaryotic molecular diversity at different steps of the wastewater treatment plant process reveals more phylogenetic novel lineages.

Published in:

World Journal of Microbiology & Biotechnology, 2017, v. 33, n. 3, p. 1, doi. 10.1007/s11274-017-2217-6

By:

Chouari, Rakia;
Leonard, Marie;
Bouali, Moez;
Guermazi, Sonda;
Rahli, Naima;
Zrafi, Ines;
Morin, Loïc;
Sghir, Abdelghani

Publication type:

Article

Taxon-Rich Phylogenomic Analyses Resolve the Eukaryotic Tree of Life and Reveal the Power of Subsampling by Sites.

Published in:

Systematic Biology, 2015, v. 64, n. 3, p. 406, doi. 10.1093/sysbio/syu126

By:

KATZ, LAURA A.;
GRANT, JESSICA R.

Publication type:

Article

Phylogenetics and the Human Microbiome.

Published in:

Systematic Biology, 2015, v. 64, n. 1, p. e26, doi. 10.1093/sysbio/syu053

By:

Matsen, Frederick A.

Publication type:

Article

Turning the Crown Upside Down: Gene Tree Parsimony Roots the Eukaryotic Tree of Life.

Published in:

Systematic Biology, 2012, v. 61, n. 4, p. 653, doi. 10.1093/sysbio/sys026

By:

Katz, Laura A.;
Grant, Jessica R.;
Parfrey, Laura Wegener;
Burleigh, J. Gordon

Publication type:

Article

In defence of the three-domains of life paradigm.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-1059-z

By:

van der Gulik, P. T. S.;
Hoff, W. D.;
Speijer, D.

Publication type:

Article

Evaluation of the mechanisms of intron loss and gain in the social amoebae Dictyostelium.

Published in:

BMC Evolutionary Biology, 2015, v. 15, p. 1, doi. 10.1186/s12862-015-0567-y

By:

Ming-Yue Ma;
Xun-Ru Che;
Porceddu, Andrea;
Deng-Ke Niu

Publication type:

Article

Dinophyte chloroplasts and phylogeny - A review.

Published in:

Grana, 1999, v. 38, n. 2/3, p. 81, doi. 10.1080/00173139908559217

By:

Schnepf, Eberhard;
ElbräChter, Malte

Publication type:

Article

De-DUFing the DUFs: Deciphering distant evolutionary relationships of Domains of Unknown Function using sensitive homology detection methods.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0069-2

By:

Mudgal, Richa;
Sandhya, Sankaran;
Chandra, Nagasuma;
Srinivasan, Narayanaswamy

Publication type:

Article

Archaeal origin of tubulin.

Published in:: Biology Direct, 2012, v. 7, n. 1, p. 10, doi. 10.1186/1745-6150-7-10
Publication type:: Article

A New Halophilic Heterolobosean Flagellate, Aurem hypersalina gen. n. et sp. n., Closely Related to the Pleurostomum‐Tulamoeba Clade: Implications for Adaptive Radiation of Halophilic Eukaryotes.

Published in:

Journal of Eukaryotic Microbiology, 2019, v. 66, n. 2, p. 221, doi. 10.1111/jeu.12664

By:

Jhin, Soo Hwan;
Park, Jong Soo

Publication type:

Article

Assessing SSU rDNA Barcodes in Foraminifera: A Case Study using <italic>Bolivina quadrata</italic>.

Published in:

Journal of Eukaryotic Microbiology, 2018, v. 65, n. 2, p. 220, doi. 10.1111/jeu.12471

By:

Borrelli, Chiara;
Hou, Yubo;
Pawlowski, Jan W.;
Holzmann, Maria;
Katz, Miriam E.;
Chandler, G. Thomas;
Bowser, Samuel S.

Publication type:

Article

<italic>Parvularia atlantis</italic> gen. et sp. nov., a Nucleariid Filose Amoeba (Holomycota, Opisthokonta).

Published in:

Journal of Eukaryotic Microbiology, 2018, v. 65, n. 2, p. 170, doi. 10.1111/jeu.12450

By:

López‐Escardó, David;
López‐García, Purificación;
Moreira, David;
Ruiz‐Trillo, Iñaki;
Torruella, Guifré

Publication type:

Article

New Species of <italic>Spirotrichonympha</italic> from <italic>Reticulitermes</italic> and the Relationships Among Genera in Spirotrichonymphea (Parabasalia).

Published in:

Journal of Eukaryotic Microbiology, 2018, v. 65, n. 2, p. 159, doi. 10.1111/jeu.12447

By:

Gile, Gillian H.;
James, Erick R.;
Tai, Vera;
Harper, James T.;
Merrell, Trevor L.;
Boscaro, Vittorio;
Husník, Filip;
Scheffrahn, Rudolf H.;
Keeling, Patrick J.

Publication type:

Article

Preferential Plastid Retention by the Acquired Phototroph <italic>Mesodinium chamaeleon</italic>.

Published in:

Journal of Eukaryotic Microbiology, 2018, v. 65, n. 2, p. 148, doi. 10.1111/jeu.12446

By:

Moeller, Holly V.;
Johnson, Matthew D.

Publication type:

Article

Mycamoeba gemmipara nov. gen., nov. sp., the First Cultured Member of the Environmental Dermamoebidae Clade LKM74 and its Unusual Life Cycle.

Published in:

Journal of Eukaryotic Microbiology, 2017, v. 64, n. 2, p. 257, doi. 10.1111/jeu.12357

By:

Blandenier, Quentin;
Seppey, Christophe V. W.;
Singer, David;
Vlimant, Michèle;
Simon, Anaële;
Duckert, Clément;
Lara, Enrique

Publication type:

Article

A practical implementation of large transcriptomic data analysis to resolve cryptic species diversity problems in microbial eukaryotes.

Published in:

BMC Evolutionary Biology, 2018, v. 18, n. 1, p. 1, doi. 10.1186/s12862-018-1283-1

By:

Tekle, Yonas I.;
Wood, Fiona C.

Publication type:

Article

Correction to: Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution.

Published in:

2018

By:

Orr, Russell J. S.;
Zhao, Sen;
Klaveness, Dag;
Yabuki, Akinori;
Ikeda, Keiji;
Watanabe, Makoto M.;
Shalchian-Tabrizi, Kamran

Publication type:

Correction Notice

Gene Network Polymorphism Illuminates Loss and Retention of Novel RNAi Silencing Components in the Cryptococcus Pathogenic Species Complex.

Published in:

PLoS Genetics, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pgen.1005868

By:

Feretzaki, Marianna;
Billmyre, R. Blake;
Clancey, Shelly Applen;
Wang, Xuying;
Heitman, Joseph

Publication type:

Article

A Brief History of Schizosaccharomyces pombe Research: A Perspective Over the Past 70 Years.

Published in:

Genetics, 2016, v. 203, n. 2, p. 621, doi. 10.1534/genetics.116.189407

By:

Fantes, Peter A.;
Hoffman, Charles S.

Publication type:

Article

Digest: Drivers of coral diversification in a major marine biodiversity hotspot.

Published in:

Evolution, 2018, v. 72, n. 2, p. 406, doi. 10.1111/evo.13419

By:

Pérez‐Escobar, Oscar Alejandro;
Cass, Susannah;
Dodsworth, Steven

Publication type:

Article

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02292-8

By:

Gordon, Sean P.;
Shengqiang Shu;
Schackwitz, Wendy;
Martin, Joel;
Lipzen, Anna;
Phillips, Jeremy;
Barry, Kerrie;
Davidson, Patrick;
Vogel, John P.;
Stritt, Christoph;
Roulin, Anne C.;
Tyler, Ludmila;
Caicedo, Ana L.;
Dochy, Niklas;
Geuten, Koen;
Budak, Hikmet;
Juengera, Thomas E.;
Mur, Luis A. J.;
Figueroa, Melania;
Contreras-Moreira, Bruno

Publication type:

Article

Analysis of the impact of the absence of RAD51 strand exchange activity in Arabidopsis meiosis.

Published in:

PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0183006

By:

Singh, Gunjita;
Da Ines, Olivier;
Gallego, Maria Eugenia;
White, Charles I.

Publication type:

Article

IsoSel: Protein Isoform Selector for phylogenetic reconstructions.

Published in:

PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0174250

By:

Philippon, Héloïse;
Souvane, Alexia;
Brochier-Armanet, Céline;
Perrière, Guy

Publication type:

Article

Diversity and Evolutionary Analysis of Iron-Containing (Type-III) Alcohol Dehydrogenases in Eukaryotes.

Published in:

PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0166851

By:

Gaona-López, Carlos;
Julián-Sánchez, Adriana;
Riveros-Rosas, Héctor

Publication type:

Article

Phylogeny of metabolic networks: A spectral graph theoretical approach.

Published in:

Journal of Biosciences, 2015, v. 40, n. 4, p. 799, doi. 10.1007/s12038-015-9562-0

By:

Deyasi, Krishanu;
Banerjee, Anirban;
Deb, Bony

Publication type:

Article

The ApaH-like phosphatase TbALPH1 is the major mRNA decapping enzyme of trypanosomes.

Published in:

PLoS Pathogens, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.ppat.1006456

By:

Kramer, Susanne

Publication type:

Article

The MLL3/MLL4 Branches of the COMPASS Family Function as Major Histone H3K4 Monomethylases at Enhancers.

Published in:

Molecular & Cellular Biology, 2013, v. 33, n. 23, p. 4745, doi. 10.1128/MCB.01181-13

By:

Deqing Hu;
Xin Gao;
Morgan, Marc A.;
Herz, Hans-Martin;
Smith, Edwin R.;
Shilatifard, Ali

Publication type:

Article

Phylogenetic analysis, molecular modeling, substrate-inhibitor specificity, and active site comparison of bacterial, fungal, and plant heme peroxidases.

Published in:

Biotechnology & Applied Biochemistry, 2012, v. 59, n. 4, p. 283, doi. 10.1002/bab.1025

By:

Singh, Swati;
Pandey, Veda P.;
Naaz, Huma;
Dwivedi, Upendra N.

Publication type:

Article

Analysis of Fox genes in Schmidtea mediterranea reveals new families and a conserved role of Smed-foxO in controlling cell death.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-80627-0

By:

Pascual-Carreras, Eudald;
Herrera-Úbeda, Carlos;
Rosselló, Maria;
Coronel-Córdoba, Pablo;
Garcia-Fernàndez, Jordi;
Saló, Emili;
Adell, Teresa

Publication type:

Article

Plant evolution: landmarks on the path to terrestrial life.

Published in:

New Phytologist, 2018, v. 217, n. 4, p. 1428, doi. 10.1111/nph.14975

By:

de Vries, Jan;
Archibald, John M.

Publication type:

Article

An Interpretation of the Ancestral Codon from Miller's Amino Acids and Nucleotide Correlations in Modern Coding Sequences.

Published in:

Bioinformatics & Biology Insights, 2015, n. 9, p. 37, doi. 10.4137/BBI.S24021

By:

Carels, Nicolas;
Ponce de Leon, Miguel

Publication type:

Article

A single loss of photosynthesis in the diatom order Bacillariales (Bacillariophyta).

Published in:

American Journal of Botany, 2019, v. 106, n. 4, p. 560, doi. 10.1002/ajb2.1267

By:

Onyshchenko, Anastasiia;
Ruck, Elizabeth C.;
Nakov, Teofil;
Alverson, Andrew J.

Publication type:

Article

PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the Eukarya.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw013

By:

Cromar, Graham L.;
Anthony Zhao;
Xuejian Xiong;
Swapna, Lakshmipuram S.;
Loughran, Noeleen;
Hongyan Song;
Parkinson, John

Publication type:

Article

Polyploidy Is Genetic Hence May Cause Non-Adaptive Radiations, Whereas Pseudopolyploidy Is Genomic Hence May Cause Adaptive Non-Radiations.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2013, v. 320, n. 5, p. 286, doi. 10.1002/jez.b.22499

By:

GORELICK, ROOT;
OLSON, KRYSTLE

Publication type:

Article

Functionally conserved enhancers with divergent sequences in distant vertebrates.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2070-7

By:

Song Yang;
Oksenberg, Nir;
Takayama, Sachiko;
Seok-Jin Heo;
Poliakov, Alexander;
Ahituv, Nadav;
Dubchak, Inna;
Boffelli, Dario

Publication type:

Article

A comparative genomics study on the effect of individual amino acids on ribosome stalling.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S10-S5

By:

Sabi, Renana;
Tuller, Tamir

Publication type:

Article

A DNA Barcoding system integrating multigene sequence data.

Published in:

Methods in Ecology & Evolution, 2015, v. 6, n. 8, p. 930, doi. 10.1111/2041-210X.12366

By:

Chesters, Douglas;
Zheng, Wei‐Min;
Zhu, Chao‐Dong;
Yu, Douglas

Publication type:

Article

Formation of chimeric genes with essential functions at the origin of eukaryotes.

Published in:

BMC Biology, 2018, v. 16, p. 1, doi. 10.1186/s12915-018-0500-0

By:

Méheust, Raphaël;
Bhattacharya, Debashish;
Pathmanathan, Jananan S.;
McInerney, James O.;
Lopez, Philippe;
Bapteste, Eric

Publication type:

Article

Horizontal gene transfer in bdelloid rotifers is ancient, ongoing and more frequent in species from desiccating habitats.

Published in:

BMC Biology, 2015, v. 13, p. 1, doi. 10.1186/s12915-015-0202-9

By:

Eyres, Isobel;
Boschetti, Chiara;
Crisp, Alastair;
Smith, Thomas P.;
Fontaneto, Diego;
Tunnacliffe, Alan;
Barraclough, Timothy G.

Publication type:

Article

Archaeal ancestors of eukaryotes: not so elusive any more.

Published in:

BMC Biology, 2015, v. 13, n. 1, p. 1, doi. 10.1186/s12915-015-0194-5

By:

Koonin, Eugene V.

Publication type:

Article

Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes.

Published in:

PLoS Genetics, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pgen.1006810

By:

Da Cunha, Violette;
Gaia, Morgan;
Gadelle, Daniele;
Nasir, Arshan;
Forterre, Patrick

Publication type:

Article

First record of Phytodietus moragai G auld, 1997 (Hymenoptera: Ichneumonidae: Tryphoninae) from Ecuador, with a description of the female of this species.

Published in:

Polish Journal of Entomology, 2017, v. 86, n. 1, p. 91, doi. 10.1515/pjen-2017-0007

By:

Kostro-Ambroziak, Agata;
Di Giovanni, Filippo

Publication type:

Article