Works matching DE "PROKARYOTIC genomes"

Results: 478

Translational arrest by a prokaryotic signal recognition particle is mediated by RNA interactions.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 10, p. 767, doi. 10.1038/nsmb.3086

By:

Beckert, Bertrand;
Kedrov, Alexej;
Sohmen, Daniel;
Kempf, Georg;
Wild, Klemens;
Sinning, Irmgard;
Stahlberg, Henning;
Wilson, Daniel N;
Beckmann, Roland

Publication type:

Article

Conformational changes required for H<sup>+</sup>/Cl<sup>−</sup> exchange mediated by a CLC transporter.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 5, p. 456, doi. 10.1038/nsmb.2814

By:

Basilio, Daniel;
Noack, Kristin;
Picollo, Alessandra;
Accardi, Alessio

Publication type:

Article

Breaking symmetry in SMCs.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 3, p. 246, doi. 10.1038/nsmb.2525

By:

Upton, Amy L;
Sherratt, David J

Publication type:

Article

An asymmetric SMC-kleisin bridge in prokaryotic condensin.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 3, p. 371, doi. 10.1038/nsmb.2488

By:

Bürmann, Frank;
Shin, Ho-Chul;
Basquin, Jérôme;
Soh, Young-Min;
Giménez-Oya, Victor;
Kim, Yeon-Gil;
Oh, Byung-Ha;
Gruber, Stephan

Publication type:

Article

Evolution of protein transport to the chloroplast envelope membranes.

Published in:

Photosynthesis Research, 2018, v. 138, n. 3, p. 315, doi. 10.1007/s11120-018-0540-x

By:

Day, Philip M.;
Theg, Steven M.

Publication type:

Article

High variability in the N terminus of coat protein among potyviruses and its advantage in producing a specific antibody.

Published in:

European Journal of Plant Pathology, 2018, v. 152, n. 2, p. 385, doi. 10.1007/s10658-018-1482-z

By:

Peng, Dewei;
Zheng, Guohua;
Zheng, Zhizhong;
Tong, Qingxuan;
Ming, Yanlin

Publication type:

Article

PBT1, a novel antimicrobial protein from the biocontrol agent Bacillus subtilis XF-1 against Plasmodiophora brassicae.

Published in:

European Journal of Plant Pathology, 2016, v. 145, n. 3, p. 583, doi. 10.1007/s10658-016-0905-y

By:

Zhao, Jing;
Wu, Yi-Xing;
Ho, Hon-Hing;
Chen, Zhuo-Jun;
Li, Xing-Yu;
He, Yue-Qiu

Publication type:

Article

Constructed Wetlands Revisited: Microbial Diversity in the -omics Era.

Published in:

Microbial Ecology, 2017, v. 73, n. 3, p. 722, doi. 10.1007/s00248-016-0881-y

By:

Sánchez, Olga

Publication type:

Article

Substantial Variability of Multiple Microbial Communities Collected at Similar Acidic Mine Water Outlets.

Published in:

Microbial Ecology, 2016, v. 72, n. 1, p. 163, doi. 10.1007/s00248-016-0760-6

By:

Falteisek, Lukáš;
Duchoslav, Vojtěch;
Čepička, Ivan

Publication type:

Article

Role of Prokaryotic Biomasses and Activities in Carbon and Phosphorus Cycles at a Coastal, Thermohaline Front and in Offshore Waters (Gulf of Manfredonia, Southern Adriatic Sea).

Published in:

Microbial Ecology, 2014, v. 67, n. 3, p. 501, doi. 10.1007/s00248-013-0350-9

By:

Monticelli, L.;
Caruso, G.;
Decembrini, F.;
Caroppo, C.;
Fiesoletti, F.

Publication type:

Article

Release and Consumption of d-Amino Acids During Growth of Marine Prokaryotes.

Published in:

Microbial Ecology, 2014, v. 67, n. 1, p. 1, doi. 10.1007/s00248-013-0294-0

By:

Azúa, Iñigo;
Goiriena, Itziar;
Baña, Zuriñe;
Iriberri, Juan;
Unanue, Marian

Publication type:

Article

The distribution of phytoplankton in the Baltic Sea assessed by a prokaryotic 16S rRNA gene primer system.

Published in:

Journal of Plankton Research, 2018, v. 40, n. 3, p. 244, doi. 10.1093/plankt/fby008

By:

BENNKE, C. M.;
POLLEHNE, F.;
MÜLLER, A.;
HANSEN, R.;
KREIKEMEYER, B.;
LABRENZ, M.

Publication type:

Article

ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3340, doi. 10.1093/bioinformatics/btx433

By:

Zhiqun Xie;
Haixu Tang

Publication type:

Article

VICTOR: genome-based phylogeny and classification of prokaryotic viruses.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3396, doi. 10.1093/bioinformatics/btx440

By:

Meier-Kolthoff, Jan P.;
Göker, Markus

Publication type:

Article

Simulome: a genome sequence and variant simulator.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1876, doi. 10.1093/bioinformatics/btx091

By:

Price, Adam;
Gibas, Cynthia

Publication type:

Article

ConsPred: a rule-based (re-)annotation framework for prokaryotic genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3327, doi. 10.1093/bioinformatics/btw393

By:

Weinmaier, Thomas;
Platzer, Alexander;
Frank, Jeroen;
Hellinger, Hans-Jörg;
Tischler, Patrick;
Rattei, Thomas

Publication type:

Article

CoLoRMap: Correcting Long Reads by Mapping short reads.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i545, doi. 10.1093/bioinformatics/btw463

By:

Haghshenas, Ehsan;
Hach, Faraz;
Sahinalp, S. Cenk;
Chauve, Cedric

Publication type:

Article

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 929, doi. 10.1093/bioinformatics/btv681

By:

Richter, Michael;
Rosselló-Móra, Ramon;
Glöckner, Frank Oliver;
Peplies, Jörg

Publication type:

Article

Quantitative frame analysis and the annotation of GC-rich (and other) prokaryotic genomes. An application to Anaeromyxobacter dehalogenans.

Published in:

Bioinformatics, 2015, v. 31, n. 20, p. 3254, doi. 10.1093/bioinformatics/btv339

By:

Oden, Steve;
Brocchieri, Luciano

Publication type:

Article

EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2659, doi. 10.1093/bioinformatics/btu366

By:

Sallet, Erika;
Gouzy, Jérôme;
Schiex, Thomas

Publication type:

Article

Prokka: rapid prokaryotic genome annotation.

Published in:

Bioinformatics, 2014, v. 30, n. 14, p. 2068, doi. 10.1093/bioinformatics/btu153

By:

Seemann, Torsten

Publication type:

Article

Complete enumeration of elementary flux modes through scalable demand-based subnetwork definition.

Published in:

Bioinformatics, 2014, v. 30, n. 11, p. 1569, doi. 10.1093/bioinformatics/btu021

By:

Hunt, Kristopher A.;
Folsom, James P.;
Taffs, Reed L.;
Carlson, Ross P.

Publication type:

Article

PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations.

Published in:

Bioinformatics, 2014, v. 30, n. 10, p. 1469, doi. 10.1093/bioinformatics/btu051

By:

Tovchigrechko, Andrey;
Venepally, Pratap;
Payne, Samuel H.

Publication type:

Article

TSSer: an automated method to identify transcription start sites in prokaryotic genomes from differential RNA sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 971, doi. 10.1093/bioinformatics/btt752

By:

Jorjani, Hadi;
Zavolan, Mihaela

Publication type:

Article

SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2641, doi. 10.1093/bioinformatics/btt454

By:

Curtis, Darren S.;
Phillips, Aaron R.;
Callister, Stephen J.;
Conlan, Sean;
McCue, Lee Ann

Publication type:

Article

Uncovering the co-evolutionary network among prokaryotic genes.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i389, doi. 10.1093/bioinformatics/bts396

By:

Cohen, Ofir;
Ashkenazy, Haim;
Burstein, David;
Pupko, Tal

Publication type:

Article

Horizontal Gene Transfer and Endophytes: An Implication for the Acquisition of Novel Traits.

Published in:

Plants (2223-7747), 2020, v. 9, n. 3, p. 305, doi. 10.3390/plants9030305

By:

Tiwari, Pragya;
Bae, Hanhong

Publication type:

Article

The Transcriptional Network Structure of a Myeloid Cell: A Computational Approach.

Published in:

International Journal of Genomics, 2017, p. 1, doi. 10.1155/2017/4858173

By:

Espinal-Enríquez, Jesús;
González-Terán, Daniel;
Hernández-Lemus, Enrique

Publication type:

Article

Functional predictability of universal gene circuits in diverse microbial hosts.

Published in:

Quantitative Biology, 2024, v. 12, n. 2, p. 129, doi. 10.1002/qub2.41

By:

Qin, Chenrui;
Xu, Tong;
Zhao, Xuejin;
Zong, Yeqing;
Zhang, Haoqian M.;
Lou, Chunbo;
Ouyang, Qi;
Qian, Long

Publication type:

Article

Haploid evolutionary constructor: New features and further challenges.

Published in:

In Silico Biology, 2012, v. 11, n. 3/4, p. 125, doi. 10.3233/isb-2012-0447

By:

Lashin, Sergey A.;
Matushkin, Yury G.

Publication type:

Article

Prediction and Inferred Evolution of Acid Tolerance Genes in the Biotechnologically Important Acidihalobacter Genus.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.848410

By:

Boase, Katelyn;
González, Carolina;
Vergara, Eva;
Neira, Gonzalo;
Holmes, David;
Watkin, Elizabeth

Publication type:

Article

Distinct Expansion of Group II Introns During Evolution of Prokaryotes and Possible Factors Involved in Its Regulation.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.849080

By:

Miura, Masahiro C.;
Nagata, Shohei;
Tamaki, Satoshi;
Tomita, Masaru;
Kanai, Akio

Publication type:

Article

Questioning the Quality of 16S rRNA Gene Sequences Derived From Human Gut Metagenome-Assembled Genomes.

Published in:

Frontiers in Microbiology, 2022, p. 1, doi. 10.3389/fmicb.2021.822301

By:

Hiseni, Pranvera;
Snipen, Lars;
Wilson, Robert C.;
Furu, Kari;
Rudi, Knut

Publication type:

Article

Iron–sulfur protein NFU2 is required for branched-chain amino acid synthesis in Arabidopsis roots.

Published in:

Journal of Experimental Botany, 2019, v. 70, n. 6, p. 1875, doi. 10.1093/jxb/erz050

By:

Touraine, Brigitte;
Vignols, Florence;
Przybyla-Toscano, Jonathan;
Ischebeck, Till;
Dhalleine, Tiphaine;
Wu, Hui-Chen;
Magno, Cyril;
Berger, Nathalie;
Couturier, Jérémy;
Dubos, Christian;
Feussner, Ivo;
Caffarri, Stefano;
Havaux, Michel;
Rouhier, Nicolas;
Gaymard, Frédéric

Publication type:

Article

Identification and characterization of a minisatellite contained within a novel miniature inverted-repeat transposable element (MITE) of Porphyromonas gingivalis.

Published in:

Mobile DNA, 2015, v. 6, p. 1, doi. 10.1186/s13100-015-0049-1

By:

Klein, Brian A.;
Tsute Chen;
Scott, Jodie C.;
Koenigsberg, Andrea L.;
Duncan, Margaret J.;
Hu, Linden T.

Publication type:

Article

Functional Roles and Genomic Impact of Miniature Inverted-Repeat Transposable Elements (MITEs) in Prokaryotes.

Published in:

Genes, 2024, v. 15, n. 3, p. 328, doi. 10.3390/genes15030328

By:

Minnick, Michael F.

Publication type:

Article

Comparative Analysis and Phylogenetic Insights of Cas14-Homology Proteins in Bacteria and Archaea.

Published in:

Genes, 2023, v. 14, n. 10, p. 1911, doi. 10.3390/genes14101911

By:

Ullah, Numan;
Yang, Naisu;
Guan, Zhongxia;
Xiang, Kuilin;
Wang, Yali;
Diaby, Mohamed;
Chen, Cai;
Gao, Bo;
Song, Chengyi

Publication type:

Article

The Diversity of Genetic Outcomes from CRISPR/Cas Gene Editing is Regulated by the Length of the Symmetrical Donor DNA Template.

Published in:

Genes, 2020, v. 11, n. 10, p. 1160, doi. 10.3390/genes11101160

By:

Hewes, Amanda M.;
Sansbury, Brett M.;
Kmiec, Eric B.

Publication type:

Article

Evaluation of the Abundance of DNA-Binding Transcription Factors in Prokaryotes.

Published in:

Genes, 2020, v. 11, n. 1, p. 52, doi. 10.3390/genes11010052

By:

Sanchez, Israel;
Hernandez-Guerrero, Rafael;
Mendez-Monroy, Paul Erick;
Martinez-Nuñez, Mario Alberto;
Ibarra, Jose Antonio;
Pérez-Rueda, Ernesto

Publication type:

Article

The drnf1 Gene from the Drought-Adapted Cyanobacterium Nostoc flagelliforme Improved Salt Tolerance in Transgenic Synechocystis and Arabidopsis Plant.

Published in:

Genes, 2018, v. 9, n. 9, p. 441, doi. 10.3390/genes9090441

By:

Cui, Lijuan;
Liu, Yinghui;
Yang, Yiwen;
Luo, Hongyi;
Qiu, Baosheng;
Gao, Xiang;
Ye, Shuifeng

Publication type:

Article

Metagenomic Insights into the Phylogenetic and Metabolic Diversity of the Prokaryotic Community Dwelling in Hypersaline Soils from the Odiel Saltmarshes (SW Spain).

Published in:

Genes, 2018, v. 9, n. 3, p. 152, doi. 10.3390/genes9030152

By:

Vera-Gargallo, Blanca;
Ventosa, Antonio

Publication type:

Article

Prokaryotic Expression and Serodiagnostic Potential of Glyceraldehyde-3-Phosphate Dehydrogenase and Thioredoxin Peroxidase from Baylisascaris schroederi.

Published in:

Genes, 2017, v. 8, n. 11, p. 293, doi. 10.3390/genes8110293

By:

Yu Li;
Ying Sun;
Xiaobin Gu;
Yue Xie;
Weiming Lai;
Bo Jing;
Xuerong Peng;
Guangyou Yang

Publication type:

Article

Evolutionary Paradox of Immunity.

Published in:

North American Journal of Medical Sciences, 2015, v. 7, n. 1, p. 30, doi. 10.4103/1947-2714.150090

By:

Větvička, Václav;
Šíma, Petr

Publication type:

Article

Estimation of universal and taxon-specific parameters of prokaryotic genome evolution.

Published in:

PLoS ONE, 2018, v. 13, n. 4, p. 1, doi. 10.1371/journal.pone.0195571

By:

Sela, Itamar;
Wolf, Yuri I.;
Koonin, Eugene V.

Publication type:

Article

Abundance, diversity and domain architecture variability in prokaryotic DNA-binding transcription factors.

Published in:

PLoS ONE, 2018, v. 13, n. 4, p. 1, doi. 10.1371/journal.pone.0195332

By:

Perez-Rueda, Ernesto;
Hernandez-Guerrero, Rafael;
Martinez-Nuñez, Mario Alberto;
Armenta-Medina, Dagoberto;
Sanchez, Israel;
Ibarra, J. Antonio

Publication type:

Article

Synthesis of Nontoxic Fluorous Sphingolipids as Molecular Probes of Exogenous Metabolic Studies for Rapid Enrichment by Fluorous Solid Phase Extraction.

Published in:

European Journal of Organic Chemistry, 2017, v. 2017, n. 6, p. 1045, doi. 10.1002/ejoc.201601302

By:

Saito, Shota;
Murai, Yuta;
Usuki, Seigo;
Yoshida, Masafumi;
Hammam, Mostafa A. S.;
Mitsutake, Susumu;
Yuyama, Kohei;
Igarashi, Yasuyuki;
Monde, Kenji

Publication type:

Article

Whole genome sequencing of mesorhizobia isolated from northern Canada.

Published in:

Canadian Journal of Microbiology, 2022, v. 68, n. 11, p. 661, doi. 10.1139/cjm-2022-0102

By:

Duan, Yi Fan;
Grogan, Paul;
Walker, Virginia K;
diCenzo, George C

Publication type:

Article

Recombinant ApxIV protein enhances protective efficacy against <italic>Actinobacillus pleuropneumoniae</italic> in mice and pigs.

Published in:

Journal of Applied Microbiology, 2018, v. 124, n. 6, p. 1366, doi. 10.1111/jam.13726

By:

Wu, H.‐C.;
Yeh, P.‐H.;
Hsueh, K.‐J.;
Yang, W.‐J.;
Chu, C.‐Y.

Publication type:

Article

A fed-batch based cultivation mode in Escherichia coli results in improved specific activity of a novel chimeric-truncated form of tissue plasminogen activator.

Published in:

Journal of Applied Microbiology, 2013, v. 114, n. 2, p. 364, doi. 10.1111/jam.12059

By:

Mahboudi, F.;
Barkhordari, F.;
Godarzi, R.M.;
Enayati, S.;
Davami, F.

Publication type:

Article

DNA replication fidelity in Mycobacterium tuberculosis is mediated by an ancestral prokaryotic proofreader.

Published in:

Nature Genetics, 2015, v. 47, n. 6, p. 677, doi. 10.1038/ng.3269

By:

Rock, Jeremy M;
Chase, Michael R;
Gerrick, Elias R;
Gawande, Richa;
Lang, Ulla F;
Lamers, Meindert H;
Ford, Christopher B;
Coscolla, Mireia;
Gagneux, Sebastien;
Fortune, Sarah M

Publication type:

Article