Works matching DE "MICROBIAL genomics"

Results: 639

Environmental microbiology: Exploring diversity with single-cell genomics.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 9, p. 598, doi. 10.1038/nrmicro3095

By:

Hofer, Ursula

Publication type:

Article

Culture-free club.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 7, p. 434, doi. 10.1038/nrmicro3052

By:

Bryant, Josephine M.

Publication type:

Article

Microbial interactions: from networks to models.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 8, p. 538, doi. 10.1038/nrmicro2832

By:

Faust, Karoline;
Raes, Jeroen

Publication type:

Article

Marine microbiology: SAR86: streamlined for success.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 2, p. 82, doi. 10.1038/nrmicro2736

By:

Molloy, Sheilagh

Publication type:

Article

Genome annotation: man versus machine.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 11, p. 762, doi. 10.1038/nrmicro2462

By:

Petty, Nicola K.

Publication type:

Article

Taming the next-gen beast.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 3, p. 161, doi. 10.1038/nrmicro2322

By:

Bentley, Stephen

Publication type:

Article

Soil genomics.

Published in:

2009

By:

Singh, Brajesh K.;
Campbell, Colin D.;
Sorenson, Soren J.;
Zhou, Jizhong

Publication type:

Letter

Environmental Microbiology: Marine phosphate stress is PhoX-rated.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 4, p. 254, doi. 10.1038/nrmicro2116

By:

Jermy, Andrew

Publication type:

Article

Towards environmental systems biology of Shewanella.

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 8, p. 592, doi. 10.1038/nrmicro1947

By:

Fredrickson, James K.;
Romine, Margaret F.;
Beliaev, Alexander S.;
Auchtung, Jennifer M.;
Driscoll, Michael E.;
Gardner, Timothy S.;
Nealson, Kenneth H.;
Osterman, Andrei L.;
Pinchuk, Grigoriy;
Reed, Jennifer L.;
Rodionov, Dmitry A.;
Rodrigues, Jorge L. M.;
Saffarini, Daad A.;
Serres, Margrethe H.;
Spormann, Alfred M.;
Zhulin, Igor B.;
Tiedje, James M.

Publication type:

Article

Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention.

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 5, p. 387, doi. 10.1038/nrmicro1889

By:

Ahmed, Niyaz;
Dobrindt, Ulrich;
Hacker, Jörg;
Hasnain, Seyed E.

Publication type:

Article

Pathogen profiling for disease management and surveillance.

Published in:

Nature Reviews Microbiology, 2007, v. 5, n. 6, p. 464, doi. 10.1038/nrmicro1656

By:

Sintchenko, Vitali;
Iredell, Jonathan R.;
Gilbert, Gwendolyn L.

Publication type:

Article

Listeria monocytogenes: a multifaceted model.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 6, p. 423, doi. 10.1038/nrmicro1413

By:

Hamon, Mélanie;
Bierne, Hélène;
Cossart, Pascale

Publication type:

Article

Meningococcal genome dynamics.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 1, p. 11, doi. 10.1038/nrmicro1324

By:

Davidsen, Tonje;
Tønjum, Tone

Publication type:

Article

In This Issue.

Published in:: Nature Reviews Microbiology, 2005, v. 3, n. 9, p. 663, doi. 10.1038/nrmicro1259
Publication type:: Article

How retroviruses select their genomes.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 8, p. 643, doi. 10.1038/nrmicro1210

By:

D'Souza, Victoria;
Summers, Michael F.

Publication type:

Article

Metagenomics: Compare and contrast.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 6, p. 453, doi. 10.1038/nrmicro1188

By:

Molloy, Sheilagh

Publication type:

Article

Metagenomics: In This Issue.

Published in:: 2005
Publication type:: Book Chapter

Metagenomics or Megagenomics?

Published in:

2005

By:

Handelsman, Jo

Publication type:

Book Chapter

Opinion: Viral metagenomics.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 6, p. 504, doi. 10.1038/nrmicro1163

By:

Edwards, Robert A.;
Rohwer, Forest

Publication type:

Article

Genome watch: Comparative Apicomplexan genomics.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 6, p. 454, doi. 10.1038/nrmicro1174

By:

Pain, Arnab;
Crossman, Lisa;
Parkhill, Julian

Publication type:

Article

Innovation: Seeing is believing: the impact of structural genomics on antimicrobial drug discovery.

Published in:

Nature Reviews Microbiology, 2004, v. 2, n. 9, p. 739, doi. 10.1038/nrmicro978

By:

Schmid, Molly B.

Publication type:

Article

All together now...

Published in:: 2004
Publication type:: Editorial

The Bordetellae: lessons from genomics.

Published in:

Nature Reviews Microbiology, 2004, v. 2, n. 5, p. 379, doi. 10.1038/nrmicro886

By:

Preston, Andrew;
Parkhill, Julian;
Maskell, Duncan J.

Publication type:

Article

Challenges of metagenomics and single-cell genomics approaches for exploring cyanobacterial diversity.

Published in:

Photosynthesis Research, 2015, v. 126, n. 1, p. 135, doi. 10.1007/s11120-014-0066-9

By:

Davison, Michelle;
Hall, Eric;
Zare, Richard;
Bhaya, Devaki

Publication type:

Article

Modelling the Human Immune System by Combining Bioinformatics and Systems Biology Approaches.

Published in:

Journal of Biological Physics, 2006, v. 32, n. 3/4, p. 335, doi. 10.1007/s10867-006-9019-7

By:

Rapin, Nicolas;
Kesmir, Can;
Frankild, Sune;
Nielsen, Morten;
Lundegaard, Claus;
Brunak, Søren;
Lund, Ole

Publication type:

Article

The Role of Microbial Genomics in Restoration Ecology: An Introduction.

Published in:

Microbial Ecology, 2023, v. 85, n. 3, p. 779, doi. 10.1007/s00248-023-02207-9

By:

Lemke, Michael;
DeSalle, Rob

Publication type:

Article

Metagenomic Signatures of Microbial Communities in Deep-Sea Hydrothermal Sediments of Azores Vent Fields.

Published in:

Microbial Ecology, 2018, v. 76, n. 2, p. 387, doi. 10.1007/s00248-018-1144-x

By:

Cerqueira, Teresa;
Barroso, Cristina;
Froufe, Hugo;
Egas, Conceição;
Bettencourt, Raul

Publication type:

Article

Metagenomic Analysis of Some Potential Nitrogen-Fixing Bacteria in Arable Soils at Different Formation Processes.

Published in:

Microbial Ecology, 2017, v. 73, n. 1, p. 162, doi. 10.1007/s00248-016-0837-2

By:

Wolińska, Agnieszka;
Kuźniar, Agnieszka;
Zielenkiewicz, Urszula;
Banach, Artur;
Izak, Dariusz;
Stępniewska, Zofia;
Błaszczyk, Mieczysław

Publication type:

Article

Microbial Genomics of a Host-Associated Commensal Bacterium in Fragmented Populations of Endangered Takahe.

Published in:

Microbial Ecology, 2016, v. 71, n. 4, p. 1020, doi. 10.1007/s00248-015-0721-5

By:

Grange, Zoë;
Gartrell, Brett;
Biggs, Patrick;
Nelson, Nicola;
Anderson, Marti;
French, Nigel

Publication type:

Article

A Beginner's Guide to Phylogenetics.

Published in:

Microbial Ecology, 2013, v. 66, n. 1, p. 1, doi. 10.1007/s00248-013-0236-x

By:

Sleator, Roy

Publication type:

Article

Microbial Environmental Genomics.

Published in:

Microbial Ecology, 2007, v. 53, n. 3, p. 367, doi. 10.1007/s00248-007-9214-5

By:

Nelson, Karen E.;
Methé, Barbara A.;
Kowalchuk, George A.

Publication type:

Article

Diversity and phylogeny of bacteria on Zimbabwe tobacco leaves estimated by 16S rRNA sequence analysis.

Published in:

Applied Microbiology & Biotechnology, 2011, v. 92, n. 5, p. 1033, doi. 10.1007/s00253-011-3367-3

By:

Su, Can;
Gu, Wen;
Zhe, Wei;
Zhang, Ke-Qin;
Duan, Yanqing;
Yang, Jinkui

Publication type:

Article

Mining Xanthomonas and Streptomyces genomes for new pectinase-encoding sequences and their heterologous expression in Escherichia coli.

Published in:

Applied Microbiology & Biotechnology, 2008, v. 78, n. 6, p. 973, doi. 10.1007/s00253-008-1389-2

By:

Zhizhuang Xiao;
Boyd, Jason;
Grosse, Stephan;
Beauchemin, Manon;
Coupe, Elizabeth;
Lau, Peter

Publication type:

Article

Overexpression, one-step purification, and biochemical characterization of a recombinant γ-glutamyltranspeptidase from Bacillus licheniformis.

Published in:

Applied Microbiology & Biotechnology, 2006, v. 73, n. 1, p. 103, doi. 10.1007/s00253-006-0440-4

By:

Lin, Long-Liu;
Chou, Pei-Ru;
Hua, Yu-Wen;
Hsu, Wen-Hwei

Publication type:

Article

The aureolic acid family of antitumor compounds: structure, mode of action, biosynthesis, and novel derivatives.

Published in:

Applied Microbiology & Biotechnology, 2006, v. 73, n. 1, p. 1, doi. 10.1007/s00253-006-0511-6

By:

Lombó, Felipe;
Menéndez, Nuria;
Salas, José A.;
Méndez, Carmen

Publication type:

Article

A direct and efficient PAGE-mediated overlap extension PCR method for gene multiple-site mutagenesis.

Published in:

Applied Microbiology & Biotechnology, 2006, v. 73, n. 1, p. 234, doi. 10.1007/s00253-006-0583-3

By:

Peng, Ri-He;
Xiong, Ai-Sheng;
Yao, Quan-Hong

Publication type:

Article

Large-scale identification of transcripts expressed in a symbiotic fungus ( Termitomyces) during plant biomass degradation.

Published in:

Applied Microbiology & Biotechnology, 2006, v. 73, n. 1, p. 195, doi. 10.1007/s00253-006-0570-8

By:

Johjima, Toru;
Taprab, Yaovapa;
Noparatnaraporn, Napavarn;
Kudo, Toshiaki;
Ohkuma, Moriya

Publication type:

Article

Faucet: streaming de novo assembly graph construction.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 147, doi. 10.1093/bioinformatics/btx471

By:

Rozov, Roye;
Goldshlager, Gil;
Halperin, Eran;
Shamir, Ron

Publication type:

Article

A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 171, doi. 10.1093/bioinformatics/btx432

By:

Liu, Xinan;
Yu, Ye;
Liu, Jinpeng;
Elliott, Corrine F;
Qian, Chen;
Liu, Jinze

Publication type:

Article

Abundance estimation and differential testing on strain level in metagenomics data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i124, doi. 10.1093/bioinformatics/btx237

By:

Fischer, Martina;
Strauch, Benjamin;
Renard, Bernhard Y.

Publication type:

Article

OrfM: a fast open reading frame predictor for metagenomic data.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2702, doi. 10.1093/bioinformatics/btw241

By:

Woodcroft, Ben J.;
Boyd, Joel A.;
Tyson, Gene W.

Publication type:

Article

MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i567, doi. 10.1093/bioinformatics/btw466

By:

Girotto, Samuele;
Pizzi, Cinzia;
Comin, Matteo

Publication type:

Article

Assemble CRISPRs from metagenomic sequencing data.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i520, doi. 10.1093/bioinformatics/btw456

By:

Jikai Lei;
Yanni Sun

Publication type:

Article

A program for verification of phylogenetic network models.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i503, doi. 10.1093/bioinformatics/btw467

By:

Gunawan, Andreas D. M.;
Bingxin Lu;
Louxin Zhang

Publication type:

Article

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2882, doi. 10.1093/bioinformatics/btv287

By:

Aßhauer, Kathrin P.;
Wemheuer, Bernd;
Daniel, Rolf;
Meinicke, Peter

Publication type:

Article

Omega: an Overlap-graph de novo Assembler for Metagenomics.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2717, doi. 10.1093/bioinformatics/btu395

By:

Haider, Bahlul;
Ahn, Tae-Hyuk;
Bushnell, Brian;
Chai, Juanjuan;
Copeland, Alex;
Pan, Chongle

Publication type:

Article

MicrobeDB: a locally maintainable database of microbial genomic sequences.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1947, doi. 10.1093/bioinformatics/bts273

By:

Langille, Morgan G. I.;
Laird, Matthew R.;
Hsiao, William W. L.;
Chiu, Terry A.;
Eisen, Jonathan A.;
Brinkman, Fiona S. L.

Publication type:

Article

Many-core algorithms for statistical phylogenetics.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1370, doi. 10.1093/bioinformatics/btp244

By:

Marc A. Suchard;
Andrew Rambaut

Publication type:

Article

Using MIxS: An Implementation Report from Two Metagenomic Information Systems.

Published in:

Biodiversity Information Science & Standards, 2017, p. 1, doi. 10.3897/tdwgproceedings.1.20637

By:

Sachs, Joel;
Thompson, Luke;
El-Kayssi, Nazir;
Bilkhu, Satpal

Publication type:

Article

Metagenomics: Urban microbiome.

Published in:

Nature Reviews Genetics, 2015, v. 16, n. 4, p. 194, doi. 10.1038/nrg3921

By:

Bahcall, Orli G.

Publication type:

Article