Works matching DE "PROTEIN domains"

Results: 2554

Integrating Sequence- and Structure-Based Similarity Metrics for the Demarcation of Multiple Viral Taxonomic Levels.

Published in:

Viruses (1999-4915), 2025, v. 17, n. 5, p. 642, doi. 10.3390/v17050642

By:

dos Santos, Igor C.;
de Souza, Rebecca di Stephano;
Tolstoy, Igor;
Oliveira, Liliane S.;
Gruber, Arthur

Publication type:

Article

Genome-Wide Identification and Expression Analysis of the YTH Domain-Containing Protein Gene Family in Salvia miltiorrhiza.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4645, doi. 10.3390/ijms26104645

By:

Wang, Chunling;
Peng, Yunliang;
Pan, Xian;
Zhang, Sixuan;
Xu, Yayun;
Li, Caili;
Zhu, Butuo;
Niu, Lili;
Lu, Shanfa

Publication type:

Article

Tumour necrosis factor‐related apoptosis‐inducing ligand (TRAIL) loss in canine mammary carcinoma.

Published in:

Veterinary & Comparative Oncology, 2022, v. 20, n. 1, p. 207, doi. 10.1111/vco.12767

By:

Kim, Soo‐Hyeon;
Seung, Byung‐Joon;
Bae, Min‐Kyung;
Lim, Ha‐Young;
Cho, Seung‐Hee;
Sur, Jung‐Hyang

Publication type:

Article

Expression and prognostic value of TRPM7 in canine mammary tumours.

Published in:

Veterinary & Comparative Oncology, 2021, v. 19, n. 3, p. 510, doi. 10.1111/vco.12689

By:

Lee, Seulji;
Lee, Sungin;
Kim, Wan Hee

Publication type:

Article

Ultrasmall Gold Nanoparticles as Clients of Biomolecular Condensates.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 46, p. 1, doi. 10.1002/chem.202301274

By:

Viola, Giovanna;
Floriani, Fulvio;
Barracchia, Carlo Giorgio;
Munari, Francesca;
D'Onofrio, Mariapina;
Assfalg, Michael

Publication type:

Article

An Extremely Stable Interprotein Tetrahedral Hg(Cys)4 Core Forms in the Zinc Hook Domain of Rad50 Protein at Physiological pH.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 66, p. 1, doi. 10.1002/chem.202202738

By:

Łuczkowski, Marek;
Padjasek, Michał;
Ba Tran, Józef;
Hemmingsen, Lars;
Kerber, Olga;
Habjanič, Jelena;
Freisinger, Eva;
Krężel, Artur

Publication type:

Article

Front Cover: An Extremely Stable Interprotein Tetrahedral Hg(Cys)4 Core Forms in the Zinc Hook Domain of Rad50 Protein at Physiological pH (Chem. Eur. J. 66/2022).

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 66, p. 1, doi. 10.1002/chem.202202738

By:

Łuczkowski, Marek;
Padjasek, Michał;
Ba Tran, Józef;
Hemmingsen, Lars;
Kerber, Olga;
Habjanič, Jelena;
Freisinger, Eva;
Krężel, Artur

Publication type:

Article

An Extremely Stable Interprotein Tetrahedral Hg(Cys)4 Core Forms in the Zinc Hook Domain of Rad50 Protein at Physiological pH.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 66, p. 1, doi. 10.1002/chem.202202738

By:

Łuczkowski, Marek;
Padjasek, Michał;
Ba Tran, Józef;
Hemmingsen, Lars;
Kerber, Olga;
Habjanič, Jelena;
Freisinger, Eva;
Krężel, Artur

Publication type:

Article

Templated Generation of a Bcl‐xL Inhibitor by Isomer‐Free SPAAC Based on Azacyclonon‐5‐yne.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 66, p. 1, doi. 10.1002/chem.202202259

By:

Brauer, Juliane;
Mötzing, Marina;
Gröst, Corinna;
Hoffmann, Ralf;
Berg, Thorsten

Publication type:

Article

Computational Insights into the Allosteric Effect and Dynamic Structural Features of the SARS‐COV‐2 Spike Protein.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 6, p. 1, doi. 10.1002/chem.202104215

By:

Xue, Qiao;
Liu, Xian;
Pan, Wenxiao;
Zhang, Aiqian;
Fu, Jianjie;
Jiang, Guibin

Publication type:

Article

Development of an Enzyme‐Inhibitor Reaction Using Cellular Retinoic Acid Binding Protein II for One‐Pot Megamolecule Assembly.

Published in:

Chemistry - A European Journal, 2021, v. 27, n. 71, p. 17843, doi. 10.1002/chem.202103059

By:

Kimmel, Blaise R.;
Mrksich, Milan

Publication type:

Article

Frontispiece: Aggregation and Amyloidogenicity of the Nuclear Coactivator Binding Domain of CREB‐Binding Protein.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 44, p. 1, doi. 10.1002/chem.202084471

By:

Garcia, Ana Maria;
Giorgiutti, Christophe;
El Khoury, Youssef;
Bauer, Valentin;
Spiegelhalter, Coralie;
Leize‐Wagner, Emmanuelle;
Hellwig, Petra;
Potier, Noelle;
Torbeev, Vladimir

Publication type:

Article

Aggregation and Amyloidogenicity of the Nuclear Coactivator Binding Domain of CREB‐Binding Protein.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 44, p. 9889, doi. 10.1002/chem.202001847

By:

Garcia, Ana Maria;
Giorgiutti, Christophe;
El Khoury, Youssef;
Bauer, Valentin;
Spiegelhalter, Coralie;
Leize‐Wagner, Emmanuelle;
Hellwig, Petra;
Potier, Noelle;
Torbeev, Vladimir

Publication type:

Article

Effect of Phosphorylation on the Structural Behaviour of Peptides Derived from the Intrinsically Disordered C‐Terminal Domain of Histone H1.0.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 27, p. 5970, doi. 10.1002/chem.201905496

By:

Chaves‐Arquero, Belén;
Pérez‐Cañadillas, José M.;
Jiménez, M. Angeles

Publication type:

Article

The dual role of ribosomal protein SA in pathogen infection: the key role of structure and localization.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09883-x

By:

Jiang, Hexiang;
Zhang, Yujia;
Fan, Jingyan;
Song, Houhui;
Yang, Yang

Publication type:

Article

Current knowledge about FLT3 gene mutations, exploring the isoforms, and protein importance in AML.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09452-2

By:

Macečková, Diana;
Vaňková, Lenka;
Holubová, Monika;
Jindra, Pavel;
Klieber, Robin;
Jandová, Eliška;
Pitule, Pavel

Publication type:

Article

Differential proteomic response of Agaricus bisporus and Trichoderma aggressivum f. europaeum to Bacillus velezensis supernatant.

Published in:

European Journal of Plant Pathology, 2021, v. 160, n. 2, p. 397, doi. 10.1007/s10658-021-02252-5

By:

Kosanovic, Dejana;
Dyas, Maria;
Grogan, Helen;
Kavanagh, Kevin

Publication type:

Article

Blackcurrant waikavirus A, a new member of the genus Waikavirus, and its phylogenetic and molecular relationship with other known members.

Published in:

European Journal of Plant Pathology, 2020, v. 157, n. 1, p. 59, doi. 10.1007/s10658-020-01978-y

By:

Thekke-Veetil, Thanuja;
Ho, Thien;
Postman, Joseph D.;
Tzanetakis, Ioannis E.

Publication type:

Article

Crystal structure and metal binding properties of the periplasmic iron component EfeM from Pseudomonas syringae EfeUOB/M iron-transport system.

Published in:

BioMetals, 2022, v. 35, n. 3, p. 573, doi. 10.1007/s10534-022-00389-2

By:

Rajasekaran, Mohan B.;
Hussain, Rohanah;
Siligardi, Giuliano;
Andrews, Simon C.;
Watson, Kimberly A.

Publication type:

Article

The indispensable role of mammalian iron sulfur proteins in function and regulation of multiple diverse metabolic pathways.

Published in:

BioMetals, 2019, v. 32, n. 3, p. 343, doi. 10.1007/s10534-019-00191-7

By:

Rouault, Tracey A.

Publication type:

Article

CRISPLD1: a novel conserved target in the transition to human heart failure.

Published in:

Basic Research in Cardiology, 2020, v. 115, n. 3, p. 1, doi. 10.1007/s00395-020-0784-4

By:

Khadjeh, Sara;
Hindmarsh, Vanessa;
Weber, Frederike;
Cyganek, Lukas;
Vidal, Ramon O.;
Torkieh, Setare;
Streckfuss-Bömeke, Katrin;
Lbik, Dawid;
Tiburcy, Malte;
Mohamed, Belal A.;
Bonn, Stefan;
Toischer, Karl;
Hasenfuss, Gerd

Publication type:

Article

ImitateDB: A database for domain and motif mimicry incorporating host and pathogen protein interactions.

Published in:

Amino Acids, 2022, v. 54, n. 6, p. 923, doi. 10.1007/s00726-022-03163-3

By:

Tayal, Sonali;
Bhatia, Venugopal;
Mehrotra, Tanya;
Bhatnagar, Sonika

Publication type:

Article

Improved detection and phylogenetic analysis of plant proteins containing LysM domains.

Published in:

Functional Plant Biology, 2024, v. 51, n. 1, p. 1, doi. 10.1071/FP23131

By:

Dallachiesa, Dardo;
Aguilar, O. Mario;
Lozano, Mauricio J.

Publication type:

Article

Signalling by co-operative higher-order assembly formation: linking evidence at molecular and cellular levels.

Published in:

2025

By:

Kobe, Bostjan;
Nanson, Jeffrey D.;
Hoad, Mikayla;
Blumenthal, Antje;
Gambin, Yann;
Sierecki, Emma;
Stacey, Katryn J.;
Ve, Thomas;
Halfmann, Randal

Publication type:

Literature Review

Photoaffinity labelling displacement assay using multiple recombinant protein domains.

Published in:

Biochemical Journal, 2023, v. 480, n. 15, p. 1183, doi. 10.1042/BCJ20230129

By:

Fallon, David J.;
Phillipou, Alex;
Schofield, Christopher J.;
House, David;
Tomkinson, Nicholas C. O.;
Bush, Jacob T.

Publication type:

Article

TAT-RHIM: a more complex issue than expected.

Published in:

Biochemical Journal, 2022, v. 479, n. 3, p. 259, doi. 10.1042/BCJ20210677

By:

Kolbrink, Benedikt;
Riebeling, Theresa;
Teiwes, Nikolas K.;
Steinem, Claudia;
Kalbacher, Hubert;
Kunzendorf, Ulrich;
Krautwald, Stefan

Publication type:

Article

The structure and function of modular Escherichia coli O157:H7 bacteriophage FTBEc1 endolysin, LysT84: defining a new endolysin catalytic subfamily.

Published in:

Biochemical Journal, 2022, v. 479, n. 2, p. 207, doi. 10.1042/BCJ20210701

By:

Love, Michael J.;
Coombes, David;
Ismail, Salim;
Billington, Craig;
Dobson, Renwick C. J.

Publication type:

Article

The interplay of self-assembly and target binding in centrin 1 from Toxoplasma gondii.

Published in:

Biochemical Journal, 2021, v. 478, n. 13, p. 2571, doi. 10.1042/BCJ20210295

By:

Conter, Carolina;
Bombardi, Luca;
Pedretti, Marco;
Favretto, Filippo;
Matteo, Adele Di;
Dominici, Paola;
Astegno, Alessandra

Publication type:

Article

Histone H3 N-terminal mimicry drives a novel network of methyl-effector interactions.

Published in:

Biochemical Journal, 2021, v. 478, n. 10, p. 1943, doi. 10.1042/BCJ20210203

By:

Jianji Chen;
Horton, John;
Sagum, Cari;
Jujun Zhou;
Xiaodong Cheng;
Bedford, Mark T.

Publication type:

Article

Classification, structural biology, and applications of mucin domain-targeting proteases.

Published in:

Biochemical Journal, 2021, v. 478, n. 8, p. 1585, doi. 10.1042/BCJ20200607

By:

Shon, D. Judy;
Kuo, Angel;
Ferracane, Michael J.;
Malaker, Stacy A.

Publication type:

Article

Organismal roles for the PI3Kα and β isoforms: their specificity, redundancy or cooperation is context-dependent.

Published in:

Biochemical Journal, 2021, v. 478, n. 6, p. 1199, doi. 10.1042/BCJ20210004

By:

Arcucci, Silvia;
Ramos-Delgado, Fernanda;
Cayron, Coralie;
Therville, Nicole;
Gratacap, Marie-Pierre;
Basset, Céline;
Thibault, Benoit;
Guillermet-Guibert, Julie

Publication type:

Article

Characterization of the different oligomeric states of the DAN family antagonists SOSTDC1 and SOST.

Published in:

Biochemical Journal, 2020, v. 477, n. 17, p. 3167, doi. 10.1042/BCJ20200552

By:

Gipson, Gregory R.;
Kattamuri, Chandramohan;
Czepnik, Magdalena;
Thompson, Thomas B.

Publication type:

Article

Mobi 2.0: an improved method to define intrinsic disorder, mobility and linear binding regions in protein structures.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 122, doi. 10.1093/bioinformatics/btx592

By:

Piovesan, Damiano;
Tosatto, Silvio C E

Publication type:

Article

Domain prediction with probabilistic directional context.

Published in:

Bioinformatics, 2017, v. 33, n. 16, p. 2471, doi. 10.1093/bioinformatics/btx221

By:

Ochoa, Alejandro;
Singh, Mona

Publication type:

Article

PhosD: inferring kinase-substrate interactions based on protein domains.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1197, doi. 10.1093/bioinformatics/btw792

By:

Gui-Min Qin;
Rui-Yi Li;
Xing-Ming Zhao

Publication type:

Article

Online interactive analysis of protein structure ensembles with Bio3D-web.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3510, doi. 10.1093/bioinformatics/btw482

By:

Skjærven, Lars;
Jariwala, Shashank;
Xin-Qiu Yao;
Grant, Barry J.

Publication type:

Article

Weighted mutual information analysis substantially improves domain-based functional network models.

Published in:

Bioinformatics, 2016, v. 32, n. 18, p. 2824, doi. 10.1093/bioinformatics/btw320

By:

Jung Eun Shim;
Insuk Lee

Publication type:

Article

MOCAT2: a metagenomic assembly, annotation and profiling framework.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2520, doi. 10.1093/bioinformatics/btw183

By:

Kultima, Jens Roat;
Coelho, Luis Pedro;
Forslund, Kristoffer;
Huerta-Cepas, Jaime;
Li, Simone S.;
Driessen, Marja;
Voigt, Anita Yvonne;
Zeller, Georg;
Sunagawa, Shinichi;
Bork, Peer

Publication type:

Article

Potential Oncogenic and Immunosuppressive Roles of Multiple EGF-Like Domains 6 (MEGF6) in Colon Cancer: Insights from Bioinformatic Analysis.

Published in:

Trends in Sciences, 2024, v. 21, n. 11, p. 1, doi. 10.48048/tis.2024.8290

By:

Arunothai Wanta;
Keerakarn Somsuan;
Chatubonwan Dongkaew;
Atthapan Morchang;
Siripat Aluksanasuwan

Publication type:

Article

不同种植物中 HMGR 基因的生物信息学分析.

Published in:

Journal of Shanxi Agricultural Sciences, 2025, v. 53, n. 3, p. 27, doi. 10.3969/j.issn.1002-2481.2025.03.04

By:

李娜;
樊裕璇;
韩红艳;
宋宇琴;
李六林;
赵红梅

Publication type:

Article

棉花 GhWLIM5 在棉纤维发育中的功能分析.

Published in:

Journal of Shanxi Agricultural Sciences, 2023, v. 51, n. 9, p. 974, doi. 10.3969/j.issn.1002-2481.2023.09.02

By:

张世鹏;
刘文丽;
程昌豪;
李学宝;
李扬

Publication type:

Article

Assessing the Dynamic Interplay of Omicron Spike Protein Receptor-Binding Domain (S-RBD) IgG Antibody Responses in Hospitalized COVID-19 Patients in Egypt.

Published in:

Zagazig University Medical Journal, 2025, v. 31, n. 2, p. 974, doi. 10.21608/zumj.2025.342767.3728

By:

Said, Huda E. M.;
zake, Lamiaa G.;
Mohamed, Sabrin Abdullah;
El-Ghamry, Reda M.;
El-Korashi, Lobna A.;
Morsi, Maha Hosni

Publication type:

Article

Peptide Mimics of the Cysteine‐Rich Regions of HapX and SreA Bind a [2Fe‐2S] Cluster In Vitro.

Published in:

Advanced Biology, 2024, v. 8, n. 5, p. 1, doi. 10.1002/adbi.202300545

By:

Rossetto, Daniele;
Sebastianelli, Lorenzo;
Oberegger, Simon;
Todorovic, Smilja;
Haas, Hubertus;
Mansy, Sheref S.

Publication type:

Article

Fragile protein folds: sequence and environmental factors affecting the equilibrium of two interconverting, stably folded protein conformations.

Published in:

Magnetic Resonance, 2021, v. 2, n. 1, p. 63, doi. 10.5194/mr-2-63-2021

By:

Xingjian Xu;
Dikiy, Igor;
Evans, Matthew R.;
Marcelino, Leandro P.;
Gardner, Kevin H.

Publication type:

Article

A synthetic cytotoxic T cell platform for rapidly prototyping TCR function.

Published in:

NPJ Precision Oncology, 2024, v. 8, n. 1, p. 1, doi. 10.1038/s41698-024-00669-9

By:

Sharma, Govinda;
Round, James;
Teng, Fei;
Ali, Zahra;
May, Chris;
Yung, Eric;
Holt, Robert A.

Publication type:

Article

A spider silk-derived solubility domain inhibits nuclear and cytosolic protein aggregation in human cells.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03442-5

By:

Schellhaus, Anna Katharina;
Xu, Shanshan;
Gierisch, Maria E.;
Vornberger, Julia;
Johansson, Jan;
Dantuma, Nico P.

Publication type:

Article

Novel fold of rotavirus glycan-binding domain predicted by AlphaFold2 and determined by X-ray crystallography.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03357-1

By:

Hu, Liya;
Salmen, Wilhelm;
Sankaran, Banumathi;
Lasanajak, Yi;
Smith, David F.;
Crawford, Sue E.;
Estes, Mary K.;
Prasad, B. V. Venkataram

Publication type:

Article

In vitro functional analysis of gRNA sites regulating assembly of hepatitis B virus.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02897-2

By:

Patel, Nikesh;
Clark, Sam;
Weiß, Eva U.;
Mata, Carlos P.;
Bohon, Jen;
Farquhar, Erik R.;
Maskell, Daniel P.;
Ranson, Neil A.;
Twarock, Reidun;
Stockley, Peter G.

Publication type:

Article

Template switching and duplications in SARS-CoV-2 genomes give rise to insertion variants that merit monitoring.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02858-9

By:

Garushyants, Sofya K.;
Rogozin, Igor B.;
Koonin, Eugene V.

Publication type:

Article

The structure of a plant-specific partitivirus capsid reveals a unique coat protein domain architecture with an intrinsically disordered protrusion.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02687-w

By:

Byrne, Matthew;
Kashyap, Aseem;
Esquirol, Lygie;
Ranson, Neil;
Sainsbury, Frank

Publication type:

Article