Works matching DE "PSEUDOGENES"

Results: 619

From pseudo-ceRNAs to circ-ceRNAs: a tale of cross-talk and competition.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 5, p. 541, doi. 10.1038/nsmb.2580

By:

Taulli, Riccardo;
Loretelli, Cristian;
Pandolfi, Pier Paolo

Publication type:

Article

The repertoire of bitter taste receptor genes in canids.

Published in:

Amino Acids, 2017, v. 49, n. 7, p. 1159, doi. 10.1007/s00726-017-2422-5

By:

Shang, Shuai;
Wu, Xiaoyang;
Chen, Jun;
Zhang, Huanxin;
Zhong, Huaming;
Wei, Qinguo;
Yan, Jiakuo;
Li, Haotian;
Liu, Guangshuai;
Sha, Weilai;
Zhang, Honghai

Publication type:

Article

chainCleaner improves genome alignment specificity and sensitivity.

Published in:

Bioinformatics, 2017, v. 33, n. 11, p. 1596, doi. 10.1093/bioinformatics/btx024

By:

Suarez, Hernando G.;
Langer, Bjoern E.;
Ladde, Pradnya;
Hiller, Michael

Publication type:

Article

Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. i27, doi. 10.1093/bioinformatics/btv232

By:

Numanagić, Ibrahim;
Malikić, Salem;
Pratt, Victoria M.;
Skaar, Todd C.;
Flockhart, David A.;
Sahinalp, S. Cenk

Publication type:

Article

RCPedia: a database of retrocopied genes.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1235, doi. 10.1093/bioinformatics/btt104

By:

Navarro, Fábio C. P.;
Galante, Pedro A. F.

Publication type:

Article

Reply to: Technical specificities of the study of the mitochondrial genome.

Published in:

2023

By:

Martínez-Moro, Álvaro;
Lamas-Toranzo, Ismael;
González-Brusi, Leopoldo;
Pérez-Gómez, Alba;
Padilla-Ruiz, Ester;
García-Blanco, Javier;
Bermejo-Álvarez, Pablo

Publication type:

Letter to the Editor

Comprehensive analysis to identify pseudogenes/lncRNAs-hsa-miR-200b-3p-COL5A2 network as a prognostic biomarker in gastric cancer.

Published in:

Hereditas, 2022, v. 159, n. 1, p. 1, doi. 10.1186/s41065-022-00257-6

By:

Li, Peiyuan;
Ji, Wenbin;
Wei, Zhiwang;
Wang, Xiulan;
Qiao, Gangjie;
Gao, Chao;
Wang, Yifan;
Qi, Feng

Publication type:

Article

Origin and Evolution of the Azolla Superorganism.

Published in:

Plants (2223-7747), 2024, v. 13, n. 15, p. 2106, doi. 10.3390/plants13152106

By:

Bujak, Jonathan;
Bujak, Alexandra

Publication type:

Article

Identification of GA2ox Family Genes and Expression Analysis under Gibberellin Treatment in Pineapple (Ananas comosus (L.) Merr.).

Published in:

Plants (2223-7747), 2023, v. 12, n. 14, p. 2673, doi. 10.3390/plants12142673

By:

Zhu, Wenhui;
Qi, Jingang;
Chen, Jingdong;
Ma, Suzhuo;
Liu, Kaichuang;
Su, Han;
Chai, Mengnan;
Huang, Youmei;
Xi, Xinpeng;
Cao, Zhuangyuan;
Qin, Yuan;
Cai, Hanyang

Publication type:

Article

ZmDREB2.9 Gene in Maize (Zea mays L.): Genome-Wide Identification, Characterization, Expression, and Stress Response.

Published in:

Plants (2223-7747), 2022, v. 11, n. 22, p. 3060, doi. 10.3390/plants11223060

By:

Filyushin, Mikhail A.;
Kochieva, Elena Z.;
Shchennikova, Anna V.

Publication type:

Article

Complete Chloroplast Genome of Rhipsalis baccifera, the only Cactus with Natural Distribution in the Old World: Genome Rearrangement, Intron Gain and Loss, and Implications for Phylogenetic Studies.

Published in:

Plants (2223-7747), 2020, v. 9, n. 8, p. 979, doi. 10.3390/plants9080979

By:

Oulo, Millicent Akinyi;
Yang, Jia-Xin;
Dong, Xiang;
Wanga, Vincent Okelo;
Mkala, Elijah Mbandi;
Munyao, Jacinta Ndunge;
Onjolo, Victor Omondi;
Rono, Peninah Cheptoo;
Hu, Guang-Wan;
Wang, Qing-Feng

Publication type:

Article

Complete Chloroplast Genome of Paphiopedilum delenatii and Phylogenetic Relationships among Orchidaceae.

Published in:

Plants (2223-7747), 2020, v. 9, n. 1, p. 1, doi. 10.3390/plants9010061

By:

Huyen-Trang Vu;
Ngan Tran;
Thanh-Diem Nguyen;
Quoc-Luan Vu;
My-Huyen Bui;
Minh-Tri Le;
Ly Le

Publication type:

Article

Developing Chloroplast Genomic Resources from 25 Avena Species for the Characterization of Oat Wild Relative Germplasm.

Published in:

Plants (2223-7747), 2019, v. 8, n. 11, p. 438, doi. 10.3390/plants8110438

By:

Fu, Yong-Bi;
Li, Pingchuan;
Biligetu, Bill

Publication type:

Article

Formation and Expression of Pseudogenes on the B Chromosome of Rye.

Published in:

Plant Cell, 2013, v. 25, n. 7, p. 2536, doi. 10.1105/tpc.113.111856

By:

Banaei-Moghaddam, Ali Mohammad;
Meier, Karla;
Karimi-Ashtiyani, Raheleh;
Houben, Andreas

Publication type:

Article

Inhibitory effect of RNA-mediated knockdown of zinc finger protein 91 pseudogene on pancreatic cancer cell growth and invasion.

Published in:

Oncology Letters, 2016, v. 12, n. 2, p. 1343, doi. 10.3892/ol.2016.4794

By:

WEIYI HUANG;
NING LI;
JIONG HU;
LEI WANG

Publication type:

Article

Plastome evolution and phylogeny of the tribe Ruteae (Rutaceae).

Published in:

Ecology & Evolution (20457758), 2023, v. 13, n. 2, p. 1, doi. 10.1002/ece3.9821

By:

Liu, Qiaoyun;
Gao, Yongwei;
Dong, Wenpan;
Zhao, Liangcheng

Publication type:

Article

Population structure of the Indonesian giant tiger shrimp Penaeus monodon: a window into evolutionary similarities between paralogous mitochondrial DNA sequences and their genomes.

Published in:

Ecology & Evolution (20457758), 2015, v. 5, n. 17, p. 3570, doi. 10.1002/ece3.1616

By:

Abdul‐Aziz, Muslihudeen A.;
Schöfl, Gerhard;
Mrotzek, Grit;
Haryanti, Haryanti;
Sugama, Ketut;
Saluz, Hans Peter

Publication type:

Article

Identification of V1R-like Putative Pheromone Receptor Sequences in Non-human Primates. Characterization of V1R Pseudogenes in Marmoset, a Primate Species that Possesses an Intact Vomeronasal Organ.

Published in:

Chemical Senses, 2002, v. 27, n. 6, p. 529, doi. 10.1093/chemse/27.6.529

By:

Giorgi, Dominique;
Rouquier, Sylvie

Publication type:

Article

Updating the str and srj (stl ) Families of Chemoreceptors in Caenorhabditis Nematodes Reveals Frequent Gene Movement Within and Between Chromosomes.

Published in:

Chemical Senses, 2001, v. 26, n. 2, p. 151, doi. 10.1093/chemse/26.2.151

By:

Robertson, Hugh M.

Publication type:

Article

Comparative and Phylogenetic Analysis Based on the Chloroplast Genome of Coleanthus subtilis (Tratt.) Seidel, a Protected Rare Species of Monotypic Genus.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.828467

By:

Ren, Jing;
Tian, Jing;
Jiang, Hui;
Zhu, Xin-Xin;
Mutie, Fredrick Munyao;
Wanga, Vincent Okelo;
Ding, Shi-Xiong;
Yang, Jia-Xin;
Dong, Xiang;
Chen, Ling-Ling;
Cai, Xiu-Zhen;
Hu, Guang-Wan

Publication type:

Article

Variation in Plastome Sizes Accompanied by Evolutionary History in Monogenomic Triticeae (Poaceae: Triticeae).

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.741063

By:

Chen, Ning;
Sha, Li-Na;
Wang, Yi-Ling;
Yin, Ling-Juan;
Zhang, Yue;
Wang, Yi;
Wu, Dan-Dan;
Kang, Hou-Yang;
Zhang, Hai-Qin;
Zhou, Yong-Hong;
Sun, Gen-Lou;
Fan, Xing

Publication type:

Article

The Multipartite Mitochondrial Genome of Marama (Tylosema esculentum).

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.787443

By:

Li, Jin;
Cullis, Christopher

Publication type:

Article

Phylogenomic Analyses of Hepatica Species and Comparative Analyses Within Tribe Anemoneae (Ranunculaceae).

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.638580

By:

Park, Kyu Tae;
Park, SeonJoo

Publication type:

Article

Properties of Modestobacter deserti sp. nov., a Kind of Novel Phosphate-Solubilizing Actinobacteria Inhabited in the Desert Biological Soil Crusts.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.742798

By:

Jiang, Zhu-Ming;
Zhang, Bing-Huo;
Sun, Hong-Min;
Zhang, Tao;
Yu, Li-Yan;
Zhang, Yu-Qin

Publication type:

Article

A Proposed New Nomenclature for the Immunoglobulin Genes of Mus musculus.

Published in:

Frontiers in Immunology, 2019, v. 10, p. 1, doi. 10.3389/fimmu.2019.02961

By:

Busse, Christian E.;
Jackson, Katherine J. L.;
Watson, Corey T.;
Collins, Andrew M.

Publication type:

Article

The Marine Mammal Class II Major Histocompatibility Complex Organization.

Published in:

Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00696

By:

Sá, André Luiz Alves de;
Breaux, Breanna;
Burlamaqui, Tibério Cesar Tortola;
Deiss, Thaddeus Charles;
Sena, Leonardo;
Criscitiello, Michael Frederick;
Schneider, Maria Paula Cruz

Publication type:

Article

Global insights into the genome dynamics of Clostridioides difficile associated with antimicrobial resistance, virulence, and genomic adaptations among clonal lineages.

Published in:

Frontiers in Cellular & Infection Microbiology, 2025, p. 1, doi. 10.3389/fcimb.2024.1493225

By:

Sholeh, Mohammad;
Beig, Masoumeh;
Kouhsari, Ebrahim;
Rohani, Mahdi;
Katouli, Mohammad;
Badmasti, Farzad

Publication type:

Article

Loop-mediated isothermal amplification of Neisseria gonorrhoeae porA pseudogene: a rapid and reliable method to detect gonorrhea.

Published in:

AMB Express, 2017, v. 7, n. 1, p. 1, doi. 10.1186/s13568-017-0349-6

By:

Liu, Mei-Ling;
Xia, Yong;
Wu, Xing-Zhong;
Huang, Jian-Qiong;
Guo, Xu-Guang

Publication type:

Article

Pseudogene product YqiG is important for pflB expression and biohydrogen production in Escherichia coli BW25113.

Published in:

3 Biotech, 2018, v. 8, n. 10, p. 1, doi. 10.1007/s13205-018-1461-2

By:

Zakaria, Muhammad Azman;
Mohd Yusoff, Mohd Zulkhairi;
Zakaria, Mohd Rafein;
Hassan, Mohd Ali;
Wood, Thomas K.;
Maeda, Toshinari

Publication type:

Article

Genomic Characteristics of Emerging Intraerythrocytic Anaplasma capra and High Prevalence in Goats, China.

Published in:

Emerging Infectious Diseases, 2023, v. 29, n. 9, p. 1780, doi. 10.3201/eid2909.230131

By:

Zhe-Tao Lin;
Li-Feng Du;
Ming-Zhu Zhang;
Xiao-Yu Han;
Bai-Hui Wang;
Jiao Meng;
Fu-Xun Yu;
Xiao-Quan Zhou;
Ning Wang;
Cheng Li;
Xiao-Yang Wang;
Jing Liu;
Wan-Ying Gao;
Run-Ze Ye;
Luo-Yuan Xia;
Yi Sun;
Na Jia;
Jia-Fu Jiang;
Lin Zhao;
Xiao-Ming Cui

Publication type:

Article

The OCT4 pseudogene POU5F1B is amplified and promotes an aggressive phenotype in gastric cancer.

Published in:

Oncogene, 2015, v. 34, n. 2, p. 199, doi. 10.1038/onc.2013.547

By:

Hayashi, H;
Arao, T;
Togashi, Y;
Kato, H;
Fujita, Y;
De Velasco, M A;
Kimura, H;
Matsumoto, K;
Tanaka, K;
Okamoto, I;
Ito, A;
Yamada, Y;
Nakagawa, K;
Nishio, K

Publication type:

Article

Isolation of Candida rugosa lipase isoforms.

Published in:

Chemical Industry / Hemijska Industrija, 2013, v. 67, n. 5, p. 703, doi. 10.2298/HEMIND120828113T

By:

Trbojević, Jovana N.;
Dimitrijević, Aleksandra S.;
Veličković, Dušan V.;
Gavrović-Jankulović, Marija;
Milosavić, Nenad B.

Publication type:

Article

Inverted Repeat of Chalcone Synthase 3 Pseudogene Is Associated with Seed Coat Discoloration in Soybean.

Published in:

Crop Science, 2013, v. 53, n. 2, p. 518, doi. 10.2135/cropsci2012.09.0540

By:

Rodriguez, Tito O.;
Rodas, Felipe Rojas;
Oyoo, Maurice E.;
Mineo Senda;
Ryoji Takahashi

Publication type:

Article

An apomixis-linked ORC3-like pseudogene is associated with silencing of its functional homolog in apomictic Paspalum simplex.

Published in:

Journal of Experimental Botany, 2016, v. 67, n. 7, p. 1965, doi. 10.1093/jxb/erw018

By:

Siena, Lorena A.;
Ortiz, Juan Pablo A.;
Calderini, Ornella;
Paolocci, Francesco;
Cáceres, Maria E.;
Kaushal, Pankaj;
Grisan, Simone;
Pessino, Silvina C.;
Pupilli, Fulvio

Publication type:

Article

Genes and Pseudogenes: Complexity of the RCCX Locus and Disease.

Published in:

Frontiers in Endocrinology, 2021, v. 12, p. 1, doi. 10.3389/fendo.2021.709758

By:

Carrozza, Cinzia;
Foca, Laura;
De Paolis, Elisa;
Concolino, Paola

Publication type:

Article

Processed pseudogene insertions in somatic cells.

Published in:

Mobile DNA, 2014, v. 5, n. 1, p. 1, doi. 10.1186/1759-8753-5-20

By:

Kazazian Jr., Haig H.

Publication type:

Article

Human Errors: A Panorama of Our Glitches, from Pointless Bones to Broken Genes.

Published in:

2018

By:

Bergman, Jerry

Publication type:

Book Review

The Origins and Genetic Functions of Pseudogenes.

Published in:

Creation Research Society Quarterly, 2013, v. 49, n. 4, p. 308

By:

Bergman, Jerry

Publication type:

Article

Polymorphism Identification in the Coding Sequences (ORFs) of the Porcine Pregnancy-Associated Glycoprotein 2-like Gene Subfamily in Pigs.

Published in:

Genes, 2024, v. 15, n. 9, p. 1149, doi. 10.3390/genes15091149

By:

Bieniek-Kobuszewska, Martyna;
Panasiewicz, Grzegorz

Publication type:

Article

Structural Features and Physiological Associations of Human 14-3-3ζ Pseudogenes.

Published in:

Genes, 2024, v. 15, n. 4, p. 399, doi. 10.3390/genes15040399

By:

Lughmani, Haroon;
Patel, Hrushil;
Chakravarti, Ritu

Publication type:

Article

Specific Patterns in Correlations of Super-Short Tandem Repeats (SSTRs) with G+C Content, Genic and Intergenic Regions, and Retrotransposons on All Human Chromosomes.

Published in:

Genes, 2024, v. 15, n. 1, p. 33, doi. 10.3390/genes15010033

By:

Henn, Lukas;
Sievers, Aaron;
Hausmann, Michael;
Hildenbrand, Georg

Publication type:

Article

Comprehensive Identification of Mitochondrial Pseudogenes (NUMTs) in the Human Telomere-to-Telomere Reference Genome.

Published in:

Genes, 2023, v. 14, n. 11, p. 2092, doi. 10.3390/genes14112092

By:

Tao, Yichen;
He, Chengpeng;
Lin, Deng;
Gu, Zhenglong;
Pu, Weilin

Publication type:

Article

Unveiling the Impact of Gene Presence/Absence Variation in Driving Inter-Individual Sequence Diversity within the CRP-I Gene Family in Mytilus spp.

Published in:

Genes, 2023, v. 14, n. 4, p. 787, doi. 10.3390/genes14040787

By:

Gualandi, Nicolò;
Fracarossi, Davide;
Riommi, Damiano;
Sollitto, Marco;
Greco, Samuele;
Mardirossian, Mario;
Pacor, Sabrina;
Hori, Tiago;
Pallavicini, Alberto;
Gerdol, Marco

Publication type:

Article

Functional Characterization of a Phf8 Processed Pseudogene in the Mouse Genome.

Published in:

Genes, 2023, v. 14, n. 1, p. 172, doi. 10.3390/genes14010172

By:

St-Germain, Joannie;
Khan, Muhammad Riaz;
Bavykina, Viktoriia;
Desmarais, Rebecka;
Scott, Micah;
Boissonneault, Guylain;
Brunet, Marie A.;
Laurent, Benoit

Publication type:

Article

Association of Inherited Copy Number Variation in ADAM3A and ADAM5 Pseudogenes with Oropharynx Cancer Risk and Outcome.

Published in:

Genes, 2022, v. 13, n. 12, p. 2408, doi. 10.3390/genes13122408

By:

Carron, Juliana;
Torricelli, Caroline;
Silva, Janet Keller;
Liu, Yichuan;
Pellegrino, Renata;
Lima, Carmen Silvia Passos;
Lourenço, Gustavo Jacob

Publication type:

Article

Susceptibility Loci for Type 2 Diabetes in the Ethnically Endogamous Indian Sindhi Population: A Pooled Blood Genome-Wide Association Study.

Published in:

Genes, 2022, v. 13, n. 8, p. 1298, doi. 10.3390/genes13081298

By:

Pipal, Kanchan V.;
Mamtani, Manju;
Patel, Ashwini A.;
Jaiswal, Sujeet G.;
Jaisinghani, Manisha T.;
Kulkarni, Hemant

Publication type:

Article

Characterization, Selection, and Trans-Species Polymorphism in the MHC Class II of Heermann's Gull (Charadriiformes).

Published in:

Genes, 2022, v. 13, n. 5, p. 917, doi. 10.3390/genes13050917

By:

Mancilla-Morales, Misael Daniel;
Velarde, Enriqueta;
Contreras-Rodríguez, Araceli;
Gómez-Lunar, Zulema;
Rosas-Rodríguez, Jesús A.;
Heras, Joseph;
Soñanez-Organis, José G.;
Ruiz, Enrico A.

Publication type:

Article

Mitochondrial Pseudogenes Suggest Repeated Inter-Species Hybridization among Direct Human Ancestors.

Published in:

Genes, 2022, v. 13, n. 5, p. 810, doi. 10.3390/genes13050810

By:

Popadin, Konstantin;
Gunbin, Konstantin;
Peshkin, Leonid;
Annis, Sofia;
Fleischmann, Zoe;
Franco, Melissa;
Kraytsberg, Yevgenya;
Markuzon, Natalya;
Ackermann, Rebecca R.;
Khrapko, Konstantin

Publication type:

Article

New Genes in the Drosophila Y Chromosome: Lessons from D. willistoni.

Published in:

Genes, 2021, v. 12, n. 11, p. 1815, doi. 10.3390/genes12111815

By:

Ricchio, João;
Uno, Fabiana;
Carvalho, A. Bernardo

Publication type:

Article

Genome-Wide Identification, Characterization and Expression Pattern Analysis of the γ-Gliadin Gene Family in the Durum Wheat (Triticum durum Desf.) Cultivar Svevo.

Published in:

Genes, 2021, v. 12, n. 11, p. 1743, doi. 10.3390/genes12111743

By:

Paris, Roberta;
Petruzzino, Giuseppe;
Savino, Michele;
De Simone, Vanessa;
Ficco, Donatella B. M.;
Trono, Daniela

Publication type:

Article