Works matching DE "FUNCTIONAL genomics"

Results: 2025

Genetic Background and Gene Essentiality.

Published in:

Genes, 2025, v. 16, n. 5, p. 570, doi. 10.3390/genes16050570

By:

Gąsienica, Paulina;
Toch, Katarzyna;
Zając-Garlacz, Kamila Stefania;
Labocha-Derkowska, Marta

Publication type:

Article

Genome-Wide Analysis of bZIP Transcription Factor Family and Its Expression in Graft Healing of Soapberry (Sapindus mukorossi Gaertn.).

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4862, doi. 10.3390/ijms26104862

By:

Chen, Na;
Wang, Lixian;
Zhong, Jing;
Jia, Liming;
Chen, Zhong

Publication type:

Article

CRISPR/Cas9-Mediated Knockout of the White Gene in Agasicles hygrophila.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4586, doi. 10.3390/ijms26104586

By:

Fu, Li;
Li, Penghui;
Rui, Zhiyi;
Sun, Jiang;
Yang, Jun;
Wang, Yuanxin;
Jia, Dong;
Hu, Jun;
Li, Xianchun;
Ma, Ruiyan

Publication type:

Article

Insecticide susceptibility in a planthopper pest increases following inoculation with cultured Arsenophonus.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae194

By:

Cai, Tingwei;
Nadal-Jimenez, Pol;
Gao, Yuanyuan;
Arai, Hiroshi;
Li, Chengyue;
Su, Chunyan;
King, Kayla C;
He, Shun;
Li, Jianhong;
Hurst, Gregory D D;
Wan, Hu

Publication type:

Article

The Dawning Era of Personalized Medicine Exposes a Gap in Medical Education.

Published in:

PLoS Medicine, 2009, v. 6, n. 8, p. 1, doi. 10.1371/journal.pmed.1000138

By:

Salari, Keyan

Publication type:

Article

DREAM6 Breaks New Ground.

Published in:

Bio-IT World, 2011, v. 10, n. 4, p. 49

By:

RUSSELL, JOHN

Publication type:

Article

Biomimetic RNA-Silencing Nanocomplexes: Overcoming Multidrug Resistance in Cancer Cells.

Published in:

Angewandte Chemie, 2014, v. 126, n. 7, p. 2028, doi. 10.1002/ange.201309985

By:

Wang, Zhongliang;
Wang, Zhe;
Liu, Dingbin;
Yan, Xuefeng;
Wang, Fu;
Niu, Gang;
Yang, Min;
Chen, Xiaoyuan

Publication type:

Article

Development and evaluation of suitable reference genes for qRT-PCR normalization of hybrids derived from Lycium barbarum and Lycium ruthenicum.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09848-0

By:

Liu, Yu;
Shi, Wenjun;
Zhang, Defang

Publication type:

Article

Transcriptome-wide identification of ARF gene family in medicinal plant Polygonatum kingianum and expression analysis of PkARF members in different tissues.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09608-0

By:

Wang, Wen-Xiang;
Yang, Ce;
Xiong, Wei;
Chen, Chun-Yu;
Li, Ning

Publication type:

Article

Karyotype evolution in monitor lizards: cross-species chromosome mapping of cDNA reveals highly conserved synteny and gene order in the Toxicofera clade.

Published in:

Chromosome Research, 2013, v. 21, n. 8, p. 805, doi. 10.1007/s10577-013-9398-0

By:

Srikulnath, Kornsorn;
Uno, Yoshinobu;
Nishida, Chizuko;
Matsuda, Yoichi

Publication type:

Article

Genome-wide comparative analysis of Mg transporter gene family between Triticum turgidum and Camelina sativa.

Published in:

BioMetals, 2021, v. 34, n. 3, p. 639, doi. 10.1007/s10534-021-00301-4

By:

Faraji, Sahar;
Ahmadizadeh, Mostafa;
Heidari, Parviz

Publication type:

Article

Functional Metagenomics as a Tool for Identification of New Antibiotic Resistance Genes from Natural Environments.

Published in:

Microbial Ecology, 2017, v. 73, n. 2, p. 479, doi. 10.1007/s00248-016-0866-x

By:

Santos, Débora;
Istvan, Paula;
Quirino, Betania;
Kruger, Ricardo

Publication type:

Article

Characterization of aromatic aminotransferases from Ephedra sinica Stapf.

Published in:

Amino Acids, 2016, v. 48, n. 5, p. 1209, doi. 10.1007/s00726-015-2156-1

By:

Kilpatrick, Korey;
Pajak, Agnieszka;
Hagel, Jillian;
Sumarah, Mark;
Lewinsohn, Efraim;
Facchini, Peter;
Marsolais, Frédéric

Publication type:

Article

Integrative physiological and transcriptome analyses elucidate the effect of shading during the grain-filling stage of wheat (Triticum aestivum) cv. ZY96-3.

Published in:

Functional Plant Biology, 2025, v. 52, n. 4, p. 1, doi. 10.1071/FP25013

By:

Li, Tao;
Arif, Muhammad;
Wang, Zhongni;
Shi, Guanyin;
Aljumaiah, Lulwah Zeyad;
Xu, Ling;
Ren, Mingjian;
Xu, Ruhong;
Li, Luhua

Publication type:

Article

The role of nuclear factor-Y (NF-Y) transcription factor in plant growth and development.

Published in:

Functional Plant Biology, 2025, v. 52, n. 4, p. 1, doi. 10.1071/FP25010

By:

Hong, Jiayi;
Feng, Xiaofeng;
Cai, Yongping;
Manzoor, Muhammad Aamir;
Cao, Yunpeng

Publication type:

Article

Enhancing the productivity and resilience of rice (Oryza sativa) under environmental stress conditions using clustered regularly interspaced short palindromic repeats (CRISPR) technology.

Published in:

2025

By:

Riaz, Aamir;
Uzair, Muhammad;
Raza, Ali;
Inam, Safeena;
Iqbal, Rashid;
Jameel, Saima;
Bibi, Bushra;
Khan, Muhammad Ramzan

Publication type:

Literature Review

Short-term and long-term fluoride stress induce differential molecular and transcriptional regulation and variable ranges of fluoride tolerance in two indica rice (Oryza sativa) varieties.

Published in:

Functional Plant Biology, 2025, v. 52, n. 1, p. 1, doi. 10.1071/FP23323

By:

Singh, Ankur;
Banerjee, Aditya;
Roychoudhury, Aryadeep

Publication type:

Article

Glycoside hydrolases reveals their differential role in response to drought and salt stress in potato (Solanum tuberosum).

Published in:

Functional Plant Biology, 2024, v. 51, n. 9, p. 1, doi. 10.1071/FP24114

By:

Aiana;
Chauhan, Hanny;
Singh, Kashmir

Publication type:

Article

Genome editing for improvement of biotic and abiotic stress tolerance in cereals.

Published in:

Functional Plant Biology, 2024, v. 51, n. 9, p. 1, doi. 10.1071/FP24092

By:

Inam, Safeena;
Muhammad, Amna;
Irum, Samra;
Rehman, Nazia;
Riaz, Aamir;
Uzair, Muhammad;
Khan, Muhammad Ramzan

Publication type:

Article

Comprehensive analysis of potato (Solanum tuberosum) PYL genes highlights their role in stress responses.

Published in:

Functional Plant Biology, 2024, v. 51, n. 8, p. 1, doi. 10.1071/FP24094

By:

Gul, Shareef;
Gul, Hameed;
Shahzad, Muhammad;
Ullah, Ikram;
Shahzad, Ali;
Khan, Shahid Ullah

Publication type:

Article

Molecular cloning and characterisation of root-specific SlREO promoter of the Indian tomato (Solanum lycopersicum L.) cultivar.

Published in:

Functional Plant Biology, 2024, v. 51, n. 7, p. 1, doi. 10.1071/FP24063

By:

Jenny, Penki;
Sakure, Amar A.;
Yadav, Ankit;
Kumar, Sushil

Publication type:

Article

Computational analysis and expression profiling of two-component system (TCS) gene family members in mango (Mangifera indica) indicated their roles in stress response.

Published in:

Functional Plant Biology, 2024, v. 51, n. 7, p. 1, doi. 10.1071/FP24055

By:

Sadaqat, Muhammad;
Fatima, Kinza;
Azeem, Farrukh;
Shaheen, Tayyaba;
Rahman, Mahmood-ur-;
Ali, Tehreem;
Al-Megrin, Wafa Abdullah I.;
Tahir ul Qamar, Muhammad

Publication type:

Article

High night temperature stress on rice (Oryza sativa) – insights from phenomics to physiology. A review.

Published in:

Functional Plant Biology, 2024, v. 51, n. 6, p. 1, doi. 10.1071/FP24057

By:

Riaz, Awais;
Thomas, Julie;
Ali, Hafiz Haider;
Zaheer, Muhammad Saqlain;
Ahmad, Naushad;
Pereira, Andy

Publication type:

Article

Identification of cysteine-rich receptor-like kinase gene family in potato: revealed StCRLK9 in response to heat, salt and drought stresses.

Published in:

Functional Plant Biology, 2024, v. 51, n. 6, p. 1, doi. 10.1071/FP23320

By:

Zameer, Roshan;
Alwutayd, Khairiah Mubarak;
Alshehri, Dikhnah;
Mubarik, Muhammad Salman;
Li, Cheng;
Yu, Chengde;
Li, Zhifang

Publication type:

Article

Developing Portulaca oleracea as a model system for functional genomics analysis of C<sub>4</sub>/CAM photosynthesis.

Published in:

Functional Plant Biology, 2021, v. 48, n. 7, p. 666, doi. 10.1071/FP20202

By:

Callegari Ferrari, Renata;
Pires Bittencourt, Priscila;
Yumi Nagumo, Paula;
Silva Oliveira, Willian;
Aurineide Rodrigues, Maria;
Hartwell, James;
Freschi, Luciano

Publication type:

Article

Exploring plant responses to aphid feeding using a full Arabidopsis microarray reveals a small number of genes with significantly altered expression.

Published in:

Bulletin of Entomological Research, 2007, v. 97, n. 5, p. 523, doi. 10.1017/S0007485307005160

By:

Couldridge, C.;
Newbury, H.J.;
Ford-Lloyd, B.;
Bale, J.;
Pritchard, J.

Publication type:

Article

Phytoplankton assemblage during the North Atlantic spring bloom assessed from functional gene analysis.

Published in:

Journal of Plankton Research, 2016, v. 38, n. 5, p. 1135, doi. 10.1093/plankt/fbw043

By:

WARD, BESS B.;
VAN OOSTENDE, NICOLAS

Publication type:

Article

caRpools: an R package for exploratory data analysis and documentation of pooled CRISPR/Cas9 screens.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 632, doi. 10.1093/bioinformatics/btv617

By:

Winter, Jan;
Breinig, Marco;
Heigwer, Florian;
Brügemann, Dirk;
Leible, Svenja;
Pelz, Oliver;
Tianzuo Zhan;
Boutros, Michael

Publication type:

Article

ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 260, doi. 10.1093/bioinformatics/btv556

By:

Jiyang Yu;
Silva, Jose;
Califano, Andrea

Publication type:

Article

VSEAMS: a pipeline for variant set enrichment analysis using summary GWAS data identifies IKZF3, BATF and ESRRA as key transcription factors in type 1 diabetes.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3342, doi. 10.1093/bioinformatics/btu571

By:

Burren, Oliver S.;
Guo, Hui;
Wallace, Chris

Publication type:

Article

A novel significance score for gene selection and ranking.

Published in:

Bioinformatics, 2014, v. 30, n. 6, p. 801, doi. 10.1093/bioinformatics/btr671

By:

Xiao, Yufei;
Hsiao, Tzu-Hung;
Suresh, Uthra;
Chen, Hung-I Harry;
Wu, Xiaowu;
Wolf, Steven E.;
Chen, Yidong

Publication type:

Article

PAVIS: a tool for Peak Annotation and Visualization.

Published in:

Bioinformatics, 2013, v. 29, n. 23, p. 3097, doi. 10.1093/bioinformatics/btt520

By:

Huang, Weichun;
Loganantharaj, Rasiah;
Schroeder, Bryce;
Fargo, David;
Li, Leping

Publication type:

Article

MaGnET: Malaria Genome Exploration Tool.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2350, doi. 10.1093/bioinformatics/btt384

By:

Sharman, Joanna L.;
Gerloff, Dietlind L.

Publication type:

Article

FunFrame: functional gene ecological analysis pipeline.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1212, doi. 10.1093/bioinformatics/btt123

By:

Weisman, David;
Yasuda, Michie;
Bowen, Jennifer L.

Publication type:

Article

mRNAStab—a web application for mRNA stability analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 6, p. 813, doi. 10.1093/bioinformatics/btt040

By:

Alic, Andrei;
Pérez-Ortín, José E.;
Moreno, Joaquín;
Arnau, Vicente

Publication type:

Article

COMPADRE: an R and web resource for pathway activity analysis by component decompositions.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2701, doi. 10.1093/bioinformatics/bts513

By:

Ramos-Rodriguez, Roberto-Rafael;
Cuevas-Diaz-Duran, Raquel;
Falciani, Francesco;
Tamez-Peña, Jose-Gerardo;
Trevino, Victor

Publication type:

Article

Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology.

Published in:

Bioinformatics, 2012, v. 28, n. 13, p. 1783, doi. 10.1093/bioinformatics/bts250

By:

Hoehndorf, Robert;
Harris, Midori A.;
Herre, Heinrich;
Rustici, Gabriella;
Gkoutos, Georgios V.

Publication type:

Article

Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 619, doi. 10.1093/bioinformatics/bts019

By:

Emde, Anne-Katrin;
Schulz, Marcel H.;
Weese, David;
Sun, Ruping;
Vingron, Martin;
Kalscheuer, Vera M.;
Haas, Stefan A.;
Reinert, Knut

Publication type:

Article

DroPhEA: Drosophila phenotype enrichment analysis for insect functional genomics.

Published in:

Bioinformatics, 2011, v. 27, n. 22, p. 3218, doi. 10.1093/bioinformatics/btr530

By:

Weng, Meng-Pin;
Liao, Ben-Yang

Publication type:

Article

Detecting biological network organization and functional gene orthologs.

Published in:

Bioinformatics, 2011, v. 27, n. 20, p. 2919, doi. 10.1093/bioinformatics/btr485

By:

Cui, Jike;
DeLuca, Todd F.;
Jung, Jae-Yoon;
Wall, Dennis P.

Publication type:

Article

Improving the efficiency of multidimensional scaling in the analysis of high-dimensional data using singular value decomposition.

Published in:

Bioinformatics, 2011, v. 27, n. 10, p. 1413, doi. 10.1093/bioinformatics/btr143

By:

Bécavin, Christophe;
Tchitchek, Nicolas;
Mintsa-Eya, Colette;
Lesne, Annick;
Benecke, Arndt

Publication type:

Article

B2G-FAR, a species-centered GO annotation repository.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 919, doi. 10.1093/bioinformatics/btr059

By:

Götz, Stefan;
Arnold, Roland;
Sebastián-León, Patricia;
Martín-Rodríguez, Samuel;
Tischler, Patrick;
Jehl, Marc-André;
Dopazo, Joaquín;
Rattei, Thomas;
Conesa, Ana

Publication type:

Article

HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 879, doi. 10.1093/bioinformatics/btr028

By:

Wang, Xin;
Terfve, Camille;
Rose, John C.;
Markowetz, Florian

Publication type:

Article

RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.

Published in:

Bioinformatics, 2011, v. 27, n. 2, p. 281, doi. 10.1093/bioinformatics/btq643

By:

Habegger, Lukas;
Sboner, Andrea;
Gianoulis, Tara A.;
Rozowsky, Joel;
Agarwal, Ashish;
Snyder, Michael;
Gerstein, Mark

Publication type:

Article

Model-free unsupervised gene set screening based on information enrichment in expression profiles.

Published in:

Bioinformatics, 2010, v. 26, n. 24, p. 3090, doi. 10.1093/bioinformatics/btq592

By:

Niida, Atushi;
Imoto, Seiya;
Yamaguchi, Rui;
Nagasaki, Masao;
Fujita, André;
Shimamura, Teppei;
Miyano, Satoru

Publication type:

Article

Exploring the Role of Tools and Technologies in Enhancing Human Knowledge Acquisition: The Flora of Cambodia as a Pilot Project.

Published in:

Biodiversity Information Science & Standards, 2024, p. 1, doi. 10.3897/biss.8.141265

By:

Ung, Visotheary

Publication type:

Article

Identification of Block-Structured Covariance Matrix on an Example of Metabolomic Data.

Published in:

Separations (2297-8739), 2021, v. 8, n. 11, p. 1, doi. 10.3390/separations8110205

By:

Mieldzioc, Adam;
Mokrzycka, Monika;
Sawikowska, Aneta

Publication type:

Article

Biallelic EPCAM deletions induce tissue-specific DNA repair deficiency and cancer predisposition.

Published in:

NPJ Precision Oncology, 2024, v. 8, n. 1, p. 1, doi. 10.1038/s41698-024-00537-6

By:

Forster, V. J.;
Aronson, M.;
Zhang, C.;
Chung, J.;
Sudhaman, S.;
Galati, M. A.;
Kelly, J.;
Negm, L.;
Ercan, A. B.;
Stengs, L.;
Durno, C.;
Edwards, M.;
Komosa, M.;
Oldfield, L. E.;
Nunes, N. M.;
Pedersen, S.;
Wellum, J.;
Siddiqui, I.;
Bianchi, V.;
Weil, B. R.

Publication type:

Article

Actionability classification of variants of unknown significance correlates with functional effect.

Published in:

NPJ Precision Oncology, 2023, v. 7, n. 1, p. 1, doi. 10.1038/s41698-023-00420-w

By:

Johnson, Amber;
Ng, Patrick Kwok-Shing;
Kahle, Michael;
Castillo, Julia;
Amador, Bianca;
Wang, Yujia;
Zeng, Jia;
Holla, Vijaykumar;
Vu, Thuy;
Su, Fei;
Kim, Sun-Hee;
Conway, Tara;
Jiang, Xianli;
Chen, Ken;
Shaw, Kenna R. Mills;
Yap, Timothy A.;
Rodon, Jordi;
Mills, Gordon B.;
Meric-Bernstam, Funda

Publication type:

Article

An evolutionary functional genomics approach identifies novel candidate regions involved in isoniazid resistance in Mycobacterium tuberculosis.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02846-z

By:

Furió, Victoria;
Moreno-Molina, Miguel;
Chiner-Oms, Álvaro;
Villamayor, Luis M.;
Torres-Puente, Manuela;
Comas, Iñaki

Publication type:

Article