Works matching DE "RNA editing"

Results: 1477

A novel adenosine-to-inosine RNA editing-based nomogram for predicting prognosis of hepatocellular carcinoma.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1547320

By:

Huang, Shiqiong;
Sun, Ji

Publication type:

Article

An expanding universe of mRNA modifications.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 11, p. 945, doi. 10.1038/nsmb.2911

By:

Jaffrey, Samie R

Publication type:

Article

Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3? UTRs.

Published in:

2012

By:

Rosenberg, Brad R;
Hamilton, Claire E;
Mwangi, Michael M;
Dewell, Scott;
Papavasiliou, F Nina

Publication type:

Correction Notice

Hypermutation by intersegmental transfer of APOBEC3G cytidine deaminase.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 10, p. 1059, doi. 10.1038/nsmb.1495

By:

Nowarski, Roni;
Britan-Rosich, Elena;
Shiloach, Tamar;
Kotler, Moshe

Publication type:

Article

Drosha versus ADAR: wrangling over pri-miRNA.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 1, p. 3, doi. 10.1038/nsmb0106-3

By:

O'Connell, Mary A.;
Keegan, Liam P.

Publication type:

Article

When extreme negativity is a positive thing.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 11, p. 940, doi. 10.1038/nsmb1105-940

By:

Scadden, Deirdre

Publication type:

Article

Bacterial physiology: Setting the speed of translation.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 6, p. 375, doi. 10.1038/nrmicro2796

By:

Kåhrström, Christina Tobin

Publication type:

Article

Controlling Site‐Directed RNA Editing by Chemically Induced Dimerization.

Published in:

Chemistry - A European Journal, 2021, v. 27, n. 48, p. 12300, doi. 10.1002/chem.202101985

By:

Stroppel, Anna S.;
Lappalainen, Ruth;
Stafforst, Thorsten

Publication type:

Article

Chemical Profiling of A‐to‐I RNA Editing Using a Click‐Compatible Phenylacrylamide.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 44, p. 9874, doi. 10.1002/chem.202001667

By:

Knutson, Steve D.;
Korn, Megan M.;
Johnson, Ryan P.;
Monteleone, Leanna R.;
Dailey, Deanna M.;
Swenson, Colin S.;
Beal, Peter A.;
Heemstra, Jennifer M.

Publication type:

Article

A Fluorescent Adenosine Analogue as a Substrate for an A-to-I RNA Editing Enzyme.

Published in:

Angewandte Chemie, 2015, v. 127, n. 30, p. 8837, doi. 10.1002/ange.201502070

By:

Mizrahi, Rena A.;
Shin, Dongwon;
Sinkeldam, Renatus W.;
Phelps, Kelly J.;
Fin, Andrea;
Tantillo, Dean J.;
Tor, Yitzhak;
Beal, Peter A.

Publication type:

Article

Top-Beiträge aus unseren Schwesterzeitschriften: Angew. Chem. 38/2014.

Published in:: Angewandte Chemie, 2014, v. 126, n. 38, p. 10142, doi. 10.1002/ange.201483813
Publication type:: Article

Dysfunctional chloroplasts up-regulate the expression of mitochondrial genes in Arabidopsis seedlings.

Published in:

Photosynthesis Research, 2016, v. 127, n. 2, p. 151, doi. 10.1007/s11120-015-0161-6

By:

Liao, Jo-Chien;
Hsieh, Wei-Yu;
Tseng, Ching-Chih;
Hsieh, Ming-Hsiun

Publication type:

Article

PPR protein PDM1/SEL1 is involved in RNA editing and splicing of plastid genes in Arabidopsis thaliana.

Published in:

Photosynthesis Research, 2015, v. 126, n. 2/3, p. 311, doi. 10.1007/s11120-015-0171-4

By:

Zhang, Hong-Dao;
Cui, Yong-Lan;
Huang, Chao;
Yin, Qian-Qian;
Qin, Xue-Mei;
Xu, Te;
He, Xiao-Fang;
Zhang, Yi;
Li, Zi-Ran;
Yang, Zhong-Nan

Publication type:

Article

Computational power of insertion-deletion (P) systems with rules of size two.

Published in:

Natural Computing, 2011, v. 10, n. 2, p. 835, doi. 10.1007/s11047-010-9208-y

By:

Krassovitskiy, Alexander;
Rogozhin, Yurii;
Verlan, Sergey

Publication type:

Article

The plastomes of Lepismium cruciforme (Vell.) Miq and Schlumbergera truncata (Haw.) Moran reveal tribe-specific rearrangements and the first loss of the trnT-GGU gene in Cactaceae.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09871-1

By:

Dalla Costa, Tanara P.;
Silva, Maria C.;
de Santana Lopes, Amanda;
Pacheco, Túlio Gomes;
da Silva, Gleyson Morais;
de Oliveira, José D.;
de Baura, Valter A.;
Balsanelli, Eduardo;
de Souza, Emanuel Maltempi;
de Oliveira Pedrosa, Fábio;
Rogalski, Marcelo

Publication type:

Article

Assembly and comparative analysis of the complete mitochondrial genome of Pinellia ternata.

Published in:

Functional Plant Biology, 2024, v. 51, n. 2, p. 1, doi. 10.1071/FP23256

By:

Xiao Liu;
Qian You;
Mengmeng Liu;
Chen Bo;
Yanfang Zhu;
Yongbo Duan;
Jianping Xue;
Dexin Wang;
Tao Xue

Publication type:

Article

Thermodynamic analysis of Zα domain-nucleic acid interactions.

Published in:

Biochemical Journal, 2022, v. 479, n. 16, p. 1727, doi. 10.1042/BCJ20220200

By:

Srinivasan, Bharath;
Kuś, Krzysztof;
Athanasiadis, Alekos

Publication type:

Article

The optimal pH of AID is skewed from that of its catalytic pocket by DNA-binding residues and surface charge.

Published in:

Biochemical Journal, 2022, v. 479, n. 1, p. 39, doi. 10.1042/BCJ20210529

By:

Ghorbani, Atefeh;
King, Justin J.;
Larijani, Mani

Publication type:

Article

CRISPR-RT: a web application for designing CRISPR-C2c2 crRNA with improved target specificity.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 117, doi. 10.1093/bioinformatics/btx580

By:

Zhu, Houxiang;
Richmond, Emily;
Liang, Chun

Publication type:

Article

e23D: database and visualization of A-to-I RNA editing sites mapped to 3D protein structures.

Published in:

Bioinformatics, 2016, v. 32, n. 14, p. 2213, doi. 10.1093/bioinformatics/btw204

By:

Solomon, Oz;
Eyal, Eran;
Amariglio, Ninette;
Unger, Ron;
Rechavi, Gidi

Publication type:

Article

DREAM: a webserver for the identification of editing sites in mature miRNAs using deep sequencing data.

Published in:

2015

By:

Alon, Shahar;
Erew, Muhammad;
Eisenberg, Eli

Publication type:

Product Review

Assessing the validity and reproducibility of genome-scale predictions.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2844, doi. 10.1093/bioinformatics/btt508

By:

Sugden, Lauren A.;
Tackett, Michael R.;
Savva, Yiannis A.;
Thompson, William A.;
Lawrence, Charles E.

Publication type:

Article

REDItools: high-throughput RNA editing detection made easy.

Published in:

Bioinformatics, 2013, v. 29, n. 14, p. 1813, doi. 10.1093/bioinformatics/btt287

By:

Picardi, Ernesto;
Pesole, Graziano

Publication type:

Article

ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.

Published in:

Bioinformatics, 2011, v. 27, n. 9, p. 1311, doi. 10.1093/bioinformatics/btr117

By:

Picardi, Ernesto;
D'Antonio, Mattia;
Carrabino, Danilo;
Castrignanò, Tiziana;
Pesole, Graziano

Publication type:

Article

DARNED: a DAtabase of RNa EDiting in humans.

Published in:

Bioinformatics, 2010, v. 26, n. 14, p. 1772, doi. 10.1093/bioinformatics/btq285

By:

Kiran, Anmol;
Baranov, Pavel V.

Publication type:

Article

VARNA: Interactive drawing and editing of the RNA secondary structure.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1974, doi. 10.1093/bioinformatics/btp250

By:

Kévin Darty;
Alain Denise;
Yann Ponty

Publication type:

Article

RNAplex: a fast tool for RNA-RNA interaction search.

Published in:

Bioinformatics, 2008, v. 24, n. 22, p. 2657, doi. 10.1093/bioinformatics/btn193

By:

Hakim Tafer;
Ivo L. Hofacker

Publication type:

Article

Genome annotation in the presence of insertional RNA editing.

Published in:

Bioinformatics, 2008, v. 24, n. 22, p. 2571, doi. 10.1093/bioinformatics/btn487

By:

Christina Beargie;
Tsunglin Liu;
Mark Corriveau;
Ha Youn Lee;
Jonatha Gott;
Ralf Bundschuh

Publication type:

Article

RNA modification writer-based immunological profile and genomic landscape of tumor microenvironment in lung adenocarcinoma.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-01791-1

By:

Xu, Qiang;
Kong, Lingyu;
Han, Zhezhu;
Jin, Xiuying;
Ding, Mingyan;
Piao, Zhengri;
Zhang, Songnan

Publication type:

Article

A-to-I-edited miR-1251-5p restrains tumor growth and metastasis in lung adenocarcinoma through regulating TCF7-mediated Wnt signaling pathway.

Published in:

Discover Oncology, 2024, v. 15, n. 1, p. 1, doi. 10.1007/s12672-024-01462-7

By:

Xu, Shuhua;
Zhou, Guoping;
He, Qiyu;
Ding, Junning;
Liu, Xiaoli;
Cheng, Youshuang;
Shen, Yaqing

Publication type:

Article

Genome-wide perturbations of Alu expression and Alu-associated post-transcriptional regulations distinguish oligodendroglioma from other gliomas.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03011-w

By:

Hwang, Taeyoung;
Kim, Sojin;
Chowdhury, Tamrin;
Yu, Hyeon Jong;
Kim, Kyung-Min;
Kang, Ho;
Won, Jae-Kyung;
Park, Sung-Hye;
Shin, Joo Heon;
Park, Chul-Kee

Publication type:

Article

A porcine brain-wide RNA editing landscape.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02238-3

By:

Huang, Jinrong;
Lin, Lin;
Dong, Zhanying;
Yang, Ling;
Zheng, Tianyu;
Gu, Weiwang;
Zhang, Yan;
Yin, Tailang;
Sjöstedt, Evelina;
Mulder, Jan;
Uhlén, Mathias;
Kristiansen, Karsten;
Bolund, Lars;
Luo, Yonglun

Publication type:

Article

Evidence of Copper Nanoparticles and Poly I:C Modulating Cas9 Interaction and Cleavage of COR (Conserved Omicron RNA).

Published in:

Bioengineering (Basel), 2023, v. 10, n. 5, p. 512, doi. 10.3390/bioengineering10050512

By:

Karrer, Lindy G.;
Mathew, Elza Neelima;
Nava-Chavez, Juliet;
Bhatti, Abeera;
Delong, Robert K.

Publication type:

Article

Phylogenomic Inference Suggests Differential Deep Time Phylogenetic Signals from Nuclear and Organellar Genomes in Gymnosperms.

Published in:

Plants (2223-7747), 2025, v. 14, n. 9, p. 1335, doi. 10.3390/plants14091335

By:

Lin, Yu-En;
Wu, Chung-Shien;
Wu, Yu-Wei;
Chaw, Shu-Miaw

Publication type:

Article

RAS, a Pentatricopeptide Repeat Protein, Interacts with OsTRX z to Regulate Chloroplast Gene Transcription and RNA Processing.

Published in:

Plants (2223-7747), 2025, v. 14, n. 2, p. 247, doi. 10.3390/plants14020247

By:

Qiu, Zhennan;
Wen, Shiyong;
Sun, Peinan;
Chen, Dongdong;
Wang, Chunmiao;
Song, Xiliang;
Xiao, Liying;
Zhang, Peiliang;
Zhao, Dongying;
Wen, Cuiping;
Guan, Peiyan;
Du, Xuechu;
Sun, Yinghui;
Xu, Chenshan;
Song, Jian

Publication type:

Article

Analysis of the Complete Mitochondrial Genome of the Bitter Gourd (Momordica charantia).

Published in:

Plants (2223-7747), 2023, v. 12, n. 8, p. 1686, doi. 10.3390/plants12081686

By:

Niu, Yu;
Zhang, Ting;
Chen, Muxi;
Chen, Guoju;
Liu, Zhaohua;
Yu, Renbo;
Han, Xu;
Chen, Kunhao;
Huang, Aizheng;
Chen, Changming;
Yang, Yan

Publication type:

Article

Isolation and Characterization of SPOTTED LEAF42 Encoding a Porphobilinogen Deaminase in Rice.

Published in:

Plants (2223-7747), 2023, v. 12, n. 2, p. 403, doi. 10.3390/plants12020403

By:

Liu, Lin;
Wang, Yunpeng;
Tian, Yunlu;
Song, Shuang;
Wu, Zewan;
Ding, Xin;
Zheng, Hai;
Huang, Yunshuai;
Liu, Shijia;
Dong, Xiaoou;
Wan, Jianmin;
Liu, Linglong

Publication type:

Article

Plastid Phylogenomic Analyses Reveal the Taxonomic Position of Peucedanum franchetii.

Published in:

Plants (2223-7747), 2023, v. 12, n. 1, p. 97, doi. 10.3390/plants12010097

By:

Song, Boni;
Liu, Changkun;
Xie, Dengfeng;
Xiao, Yulin;
Tian, Rongming;
Li, Zixuan;
Zhou, Songdong;
He, Xingjin

Publication type:

Article

An Overview of Pentatricopeptide Repeat (PPR) Proteins in the Moss Physcomitrium patens and Their Role in Organellar Gene Expression.

Published in:

Plants (2223-7747), 2022, v. 11, n. 17, p. 2279, doi. 10.3390/plants11172279

By:

Sugita, Mamoru

Publication type:

Article

Management of Post-Harvest Anthracnose: Current Approaches and Future Perspectives.

Published in:

Plants (2223-7747), 2022, v. 11, n. 14, p. N.PAG, doi. 10.3390/plants11141856

By:

Ciofini, Alice;
Negrini, Francesca;
Baroncelli, Riccardo;
Baraldi, Elena

Publication type:

Article

Genome-Wide Analysis of Multiple Organellar RNA Editing Factor (MORF) Family in Kiwifruit (Actinidia chinensis) Reveals Its Roles in Chloroplast RNA Editing and Pathogens Stress.

Published in:

Plants (2223-7747), 2022, v. 11, n. 2, p. 146, doi. 10.3390/plants11020146

By:

Xiong, Yuhong;
Fang, Jing;
Jiang, Xiaohan;
Wang, Tengfei;
Liu, Kangchen;
Peng, Huixiang;
Zhang, Xiujun;
Zhang, Aidi

Publication type:

Article

Plastome Characterization and Phylogenomic Analysis Yield New Insights into the Evolutionary Relationships among the Species of the Subgenus Bryocles (Hosta ; Asparagaceae) in East Asia.

Published in:

Plants (2223-7747), 2021, v. 10, n. 10, p. 1980, doi. 10.3390/plants10101980

By:

Yang, JiYoung;
Choi, Mi-Jung;
Kim, Seon-Hee;
Choi, Hyeok-Jae;
Kim, Seung-Chul

Publication type:

Article

RNA Interference and CRISPR/Cas Gene Editing for Crop Improvement: Paradigm Shift towards Sustainable Agriculture.

Published in:

Plants (2223-7747), 2021, v. 10, n. 9, p. 1914, doi. 10.3390/plants10091914

By:

Rajput, Meenakshi;
Choudhary, Khushboo;
Kumar, Manish;
Vivekanand, V.;
Chawade, Aakash;
Ortiz, Rodomiro;
Pareek, Nidhi

Publication type:

Article

Chloroplast Genome of Rambutan and Comparative Analyses in Sapindaceae.

Published in:

Plants (2223-7747), 2021, v. 10, n. 2, p. 283, doi. 10.3390/plants10020283

By:

Dong, Fei;
Lin, Zhicong;
Lin, Jing;
Ming, Ray;
Zhang, Wenping

Publication type:

Article

Detection and Analysis of C-to-U RNA Editing in Rice Mitochondria-Encoded ORFs.

Published in:

Plants (2223-7747), 2020, v. 9, n. 10, p. 1277, doi. 10.3390/plants9101277

By:

Zheng, Peng;
Wang, Dongxin;
Huang, Yuqing;
Chen, Hao;
Du, Hao;
Tu, Jumin

Publication type:

Article

The Genome and Transcriptome Analysis of the Vigna mungo Chloroplast.

Published in:

Plants (2223-7747), 2020, v. 9, n. 9, p. 1247, doi. 10.3390/plants9091247

By:

Nawae, Wanapinun;
Yundaeng, Chutintorn;
Naktang, Chaiwat;
Kongkachana, Wasitthee;
Yoocha, Thippawan;
Sonthirod, Chutima;
Narong, Nattapol;
Somta, Prakit;
Laosatit, Kularb;
Tangphatsornruang, Sithichoke;
Pootakham, Wirulda

Publication type:

Article

Comparison of Chloroplast Genomes among Species of Unisexual and Bisexual Clades of the Monocot Family Araceae.

Published in:

Plants (2223-7747), 2020, v. 9, n. 6, p. 737, doi. 10.3390/plants9060737

By:

Abdullah;
Henriquez, Claudia L.;
Mehmood, Furrukh;
Shahzadi, Iram;
Ali, Zain;
Waheed, Mohammad Tahir;
Croat, Thomas B.;
Poczai, Peter;
Ahmed, Ibrar

Publication type:

Article

Assembly and Analysis of the Complete Mitochondrial Genome of Capsella bursa-pastoris.

Published in:

Plants (2223-7747), 2020, v. 9, n. 4, p. 469, doi. 10.3390/plants9040469

By:

Omelchenko, Denis O.;
Makarenko, Maxim S.;
Kasianov, Artem S.;
Schelkunov, Mikhail I.;
Logacheva, Maria D.;
Penin, Aleksey A.

Publication type:

Article

Arabidopsis RanBP2-Type Zinc Finger Proteins Related to Chloroplast RNA Editing Factor OZ1.

Published in:

Plants (2223-7747), 2020, v. 9, n. 3, p. 307, doi. 10.3390/plants9030307

By:

Gipson, Andrew B.;
Giloteaux, Ludovic;
Hanson, Maureen R.;
Bentolila, Stephane

Publication type:

Article

The Complete Chloroplast Genomes of Two Lespedeza Species: Insights into Codon Usage Bias, RNA Editing Sites, and Phylogenetic Relationships in Desmodieae (Fabaceae: Papilionoideae).

Published in:

Plants (2223-7747), 2020, v. 9, n. 1, p. 1, doi. 10.3390/plants9010051

By:

Yamuna Somaratne;
De-Long Guan;
Wen-Qiang Wang;
Liang Zhao;
Sheng-Quan Xu

Publication type:

Article