Works matching DE "CIS-regulatory elements (Genetics)"

Results: 579

Identification and characterization of responsive genes in rice during compatible interactions with pathogenic pathovars of <italic>Xanthomonas oryzae</italic>.

Published in:

European Journal of Plant Pathology, 2018, v. 151, n. 1, p. 141, doi. 10.1007/s10658-017-1363-x

By:

Khojasteh, Moein;
Khahani, Bahman;
Taghavi, Mohsen;
Tavakol, Elahe

Publication type:

Article

A novel method for predicting activity of cis-regulatory modules, based on a diverse training set.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 1, doi. 10.1093/bioinformatics/btw552

By:

Wei Yang;
Sinha, Saurabh

Publication type:

Article

CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs.

Published in:

Bioinformatics, 2016, v. 32, n. 18, p. 2858, doi. 10.1093/bioinformatics/btw337

By:

Arenillas, David J.;
Wasserman, Wyeth W.;
Mathelier, Anthony;
Forrest, Alistair R. R.;
Kawaji, Hideya;
Lassmann, Timo

Publication type:

Article

INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1229, doi. 10.1093/bioinformatics/btv726

By:

Parra, R. Gonzalo;
Rohr, Cristian O.;
Koile, Daniel;
Perez-Castro, Carolina;
Yankilevich, Patricio

Publication type:

Article

LedPred: an R/bioconductor package to predict regulatory sequences using support vector machines.

Published in:

Bioinformatics, 2016, v. 32, n. 7, p. 1091, doi. 10.1093/bioinformatics/btv705

By:

Seyres, Denis;
Darbo, Elodie;
Perrin, Laurent;
Herrmann, Carl;
González, Aitor

Publication type:

Article

BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3758, doi. 10.1093/bioinformatics/btv466

By:

De Witte, Dieter;
Van de Velde, Jan;
Decap, Dries;
Van Bel, Michiel;
Audenaert, Pieter;
Demeester, Piet;
Dhoedt, Bart;
Vandepoele, Klaas;
Fostier, Jan

Publication type:

Article

Heterozygous variants in GATA2 contribute to DCML deficiency in mice by disrupting tandem protein binding.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03316-w

By:

Hasegawa, Atsushi;
Hayasaka, Yuki;
Morita, Masanobu;
Takenaka, Yuta;
Hosaka, Yuna;
Hirano, Ikuo;
Yamamoto, Masayuki;
Shimizu, Ritsuko

Publication type:

Article

Genome-Wide Association between the 2q33.1 Locus and Intracranial Aneurysm Susceptibility: An Updated Meta-Analysis Including 18,019 Individuals.

Published in:

Journal of Clinical Medicine, 2019, v. 8, n. 5, p. 692, doi. 10.3390/jcm8050692

By:

Hong, Eun Pyo;
Kim, Bong Jun;
Jeon, Jin Pyeong

Publication type:

Article

Identification and Characterization of the AREB/ABF Gene Family in Three Orchid Species and Functional Analysis of DcaABI5 in Arabidopsis.

Published in:

Plants (2223-7747), 2024, v. 13, n. 6, p. 774, doi. 10.3390/plants13060774

By:

Xie, Xi;
Lin, Miaoyan;
Xiao, Gengsheng;
Wang, Qin;
Li, Zhiyong

Publication type:

Article

Genome-Wide Identification of the Rose SWEET Gene Family and Their Different Expression Profiles in Cold Response between Two Rose Species.

Published in:

Plants (2223-7747), 2023, v. 12, n. 7, p. 1474, doi. 10.3390/plants12071474

By:

Song, Xiangshang;
Kou, Yaping;
Duan, Mingao;
Feng, Bo;
Yu, Xiaoyun;
Jia, Ruidong;
Zhao, Xin;
Ge, Hong;
Yang, Shuhua

Publication type:

Article

Genome-Wide Identification and Structural Characterization of Growth-Regulating Factors (GRFs) in Actinida eriantha and Actinidia chinensis.

Published in:

Plants (2223-7747), 2022, v. 11, n. 13, p. 1633, doi. 10.3390/plants11131633

By:

Abid, Muhammad;
Wang, Zupeng;
Feng, Chen;
Luo, Juan;
Zhang, Yi;
Tu, Jing;
Cai, Xinxia;
Gao, Puxin

Publication type:

Article

Genome-Wide Identification, Phylogenetic and Expression Pattern Analysis of GATA Family Genes in Cucumber (Cucumis sativus L.).

Published in:

Plants (2223-7747), 2021, v. 10, n. 8, p. 1626, doi. 10.3390/plants10081626

By:

Zhang, Kaijing;
Jia, Li;
Yang, Dekun;
Hu, Yuchao;
Njogu, Martin Kagiki;
Wang, Panqiao;
Lu, Xiaomin;
Yan, Congsheng

Publication type:

Article

Genome-Wide In Silico Identification and Comparative Analysis of Dof Gene Family in Brassica napus.

Published in:

Plants (2223-7747), 2021, v. 10, n. 4, p. 709, doi. 10.3390/plants10040709

By:

Lohani, Neeta;
Babaei, Saeid;
Singh, Mohan B.;
Bhalla, Prem L.

Publication type:

Article

Genome-Wide Identification and Characterization of the CsFHY3/FAR1 Gene Family and Expression Analysis under Biotic and Abiotic Stresses in Tea Plants (Camellia sinensis).

Published in:

Plants (2223-7747), 2021, v. 10, n. 3, p. 570, doi. 10.3390/plants10030570

By:

Liu, Zhengjun;
An, Chuanjing;
Zhao, Yiqing;
Xiao, Yao;
Bao, Lu;
Gong, Chunmei;
Gao, Yuefang;
Molinier, Jean

Publication type:

Article

A Quarter Century History of ATML1 Gene Research.

Published in:

Plants (2223-7747), 2021, v. 10, n. 2, p. 290, doi. 10.3390/plants10020290

By:

Iida, Hiroyuki;
Takada, Shinobu;
Ueda, Minako

Publication type:

Article

Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in Arabidopsis thaliana.

Published in:

Plants (2223-7747), 2020, v. 9, n. 12, p. 1751, doi. 10.3390/plants9121751

By:

Li, Yichao;
Mullin, Maxwell;
Zhang, Yingnan;
Drews, Frank;
Welch, Lonnie R.;
Showalter, Allan M.

Publication type:

Article

Genome-Wide Identification of WRKY Genes in Artemisia annua : Characterization of a Putative Ortholog of AtWRKY40.

Published in:

Plants (2223-7747), 2020, v. 9, n. 12, p. 1669, doi. 10.3390/plants9121669

By:

De Paolis, Angelo;
Caretto, Sofia;
Quarta, Angela;
Di Sansebastiano, Gian-Pietro;
Sbrocca, Irene;
Mita, Giovanni;
Frugis, Giovanna

Publication type:

Article

Unravelling Cotton Nonexpressor of Pathogenesis-Related 1(NPR1)-Like Genes Family: Evolutionary Analysis and Putative Role in Fiber Development and Defense Pathway.

Published in:

Plants (2223-7747), 2020, v. 9, n. 8, p. 999, doi. 10.3390/plants9080999

By:

Agarwal, Neha;
Srivastava, Rakesh;
Verma, Akash;
Rai, Krishan Mohan;
Singh, Babita;
Verma, Praveen Chandra

Publication type:

Article

Isolation, Cloning and Characterization of a Constitutive Plant from Potato Aquaporin Gene.

Published in:

Pakistan Journal of Scientific & Industrial Research Series B: Biological Sciences, 2020, v. 63, n. 3, p. 169, doi. 10.52763/pjsir.biol.sci.63.3.2020.169.178

By:

Mubeen, Hira;
Naqvi, Rubab Zahra;
Masood, Ammara;
Saleem, Mushtaq A.;
Bashir, Aftab;
Raza, Shahid

Publication type:

Article

EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments.

Published in:

Plant Cell, 2016, v. 28, n. 10, p. 2365, doi. 10.1105/tpc.16.00158

By:

Wilkins, Olivia;
Hafemeister, Christoph;
Plessis, Anne;
Holloway-Phillips, Meisha-Marika;
Pham, Gina M.;
Nicotra, Adrienne B.;
Gregorio, Glenn B.;
Jagadish, S.V. Krishna;
Septiningsih, Endang M.;
Bonneau, Richard;
Purugganan, Michael

Publication type:

Article

Computational methods for identifying enhancer-promoter interactions.

Published in:

Quantitative Biology, 2023, v. 11, n. 2, p. 122, doi. 10.15302/J-QB-022-0322

By:

Haiyan Gong;
Zhengyuan Chen;
Yuxin Tang;
Minghong Li;
Sichen Zhang;
Xiaotong Zhang;
Yang Chen

Publication type:

Article

Population-scale genetic control of alternative polyadenylation and its association with human diseases.

Published in:

Quantitative Biology, 2022, v. 10, n. 1, p. 44, doi. 10.15302/J-QB-021-0252

By:

Lei Li;
Yumei Li;
Xudong Zou;
Fuduan Peng;
Ya Cui;
Wagner, Eric J.;
Wei Li

Publication type:

Article

Transcriptional regulation of spatiotemporal gene expression within the seminiferous epithelium: Mouse Acrv1 gene as a model.

Published in:

Andrology, 2023, v. 11, n. 5, p. 904, doi. 10.1111/andr.13410

By:

Reddi, Prabhakara P.

Publication type:

Article

Genome-Wide Characterization of Superoxide Dismutase (SOD) Genes in Daucus carota : Novel Insights Into Structure, Expression, and Binding Interaction With Hydrogen Peroxide (H2O2) Under Abiotic Stress Condition.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.870241

By:

Zameer, Roshan;
Fatima, Kinza;
Azeem, Farrukh;
ALgwaiz, Hussah I. M.;
Sadaqat, Muhammad;
Rasheed, Asima;
Batool, Riffat;
Shah, Adnan Noor;
Zaynab, Madiha;
Shah, Anis Ali;
Attia, Kotb A.;
AlKahtani, Muneera D. F.;
Fiaz, Sajid

Publication type:

Article

Spatial and Temporal Transcriptomic Heredity and Asymmetry in an Artificially Constructed Allotetraploid Wheat (AADD).

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.887133

By:

Ma, Xintong;
Zhang, Zhibin;
Li, Guo;
Gou, Xiaowan;
Bian, Yao;
Zhao, Yue;
Wang, Bin;
Lang, Man;
Wang, Tianya;
Xie, Kun;
Liu, Xiaoming;
Liu, Bao;
Gong, Lei

Publication type:

Article

Specific Bacterial Pathogen Phytosensing Is Enabled by a Synthetic Promoter-Transcription Factor System in Potato.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.873480

By:

Persad-Russell, Ramona;
Mazarei, Mitra;
Schimel, Tayler Marie;
Howe, Lana;
Schmid, Manuel J.;
Kakeshpour, Tayebeh;
Barnes, Caitlin N.;
Brabazon, Holly;
Seaberry, Erin M.;
Reuter, D. Nikki;
Lenaghan, Scott C.;
Stewart Jr., C. Neal

Publication type:

Article

Characterization of Transcription Regulatory Domains of OsMADS29: Identification of Proximal Auxin-Responsive Domains and a Strong Distal Negative Element.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.850956

By:

Khurana, Ridhi;
Bhimrajka, Sanchi;
Sivakrishna Rao, Gundra;
Verma, Vibha;
Boora, Neelima;
Gawande, Gautam;
Kapoor, Meenu;
Rao, Khareedu Venkateswara;
Kapoor, Sanjay

Publication type:

Article

Walnut N -Acetylserotonin Methyltransferase Gene Family Genome-Wide Identification and Diverse Functions Characterization During Flower Bud Development.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.861043

By:

Ma, Kai;
Xu, Ruiqiang;
Zhao, Yu;
Han, Liqun;
Xu, Yuhui;
Li, Lili;
Wang, Juan;
Li, Ning

Publication type:

Article

Increasing Fruit Weight by Editing a Cis -Regulatory Element in Tomato KLUH Promoter Using CRISPR/Cas9.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.879642

By:

Li, Qiang;
Feng, Qian;
Snouffer, Ashley;
Zhang, Biyao;
Rodríguez, Gustavo Rubén;
van der Knaap, Esther

Publication type:

Article

Genome-Wide Identification and Expression Analysis of the R2R3-MYB Transcription Factor Family Revealed Their Potential Roles in the Flowering Process in Longan (Dimocarpus longan).

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.820439

By:

Chen, Qinchang;
Zhang, Xiaodan;
Fang, Yaxue;
Wang, Baiyu;
Xu, Shaosi;
Zhao, Kai;
Zhang, Jisen;
Fang, Jingping

Publication type:

Article

Heat Shock Protein 20 Gene Superfamilies in Red Algae: Evolutionary and Functional Diversities.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.817852

By:

Gao, Tian;
Mo, Zhaolan;
Tang, Lei;
Yu, Xinzi;
Du, Guoying;
Mao, Yunxiang

Publication type:

Article

Genome-Wide Characterization of Serine/Arginine-Rich Gene Family and Its Genetic Effects on Agronomic Traits of Brassica napus.

Published in:

Frontiers in Plant Science, 2022, v. 12, p. 1, doi. 10.3389/fpls.2022.829668

By:

Xie, Meili;
Zuo, Rong;
Bai, Zetao;
Yang, Lingli;
Zhao, Chuanji;
Gao, Feng;
Cheng, Xiaohui;
Huang, Junyan;
Liu, Yueying;
Li, Yang;
Tong, Chaobo;
Liu, Shengyi

Publication type:

Article

Design and Analysis of Native Photorespiration Gene Motifs of Promoter Untranslated Region Combinations Under Short Term Abiotic Stress Conditions.

Published in:

Frontiers in Plant Science, 2022, v. 12, p. 1, doi. 10.3389/fpls.2022.828729

By:

Basu, Debarati;
South, Paul F.

Publication type:

Article

TALE Transcription Factors in Sweet Orange (Citrus sinensis): Genome-Wide Identification, Characterization, and Expression in Response to Biotic and Abiotic Stresses.

Published in:

Frontiers in Plant Science, 2022, v. 12, p. 1, doi. 10.3389/fpls.2021.814252

By:

Peng, Weiye;
Yang, Yang;
Xu, Jing;
Peng, Erping;
Dai, Suming;
Dai, Liangying;
Wang, Yunsheng;
Yi, Tuyong;
Wang, Bing;
Li, Dazhi;
Song, Na

Publication type:

Article

Differential Functions of Pepper Stress-Associated Proteins in Response to Abiotic Stresses.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.756068

By:

Bae, Yeongil;
Lim, Chae Woo;
Lee, Sung Chul

Publication type:

Article

Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS Transcription Factor Genes in Rice.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.777285

By:

Dutta, Mouboni;
Saha, Anusree;
Moin, Mazahar;
Kirti, Pulugurtha Bharadwaja

Publication type:

Article

Transcriptomic and Proteomic Profiling Reveal the Key Role of AcMYB16 in the Response of Pseudomonas syringae pv. actinidiae in Kiwifruit.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.756330

By:

Wang, Xiaojie;
Li, Yawei;
Liu, Yuanyuan;
Zhang, Dongle;
Ni, Min;
Jia, Bing;
Heng, Wei;
Fang, Zemin;
Zhu, Li-wu;
Liu, Pu

Publication type:

Article

PsEND1 Is a Key Player in Pea Pollen Development Through the Modulation of Redox Homeostasis.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.765277

By:

Hamza, Rim;
Roque, Edelín;
Gómez-Mena, Concepción;
Madueño, Francisco;
Beltrán, José Pío;
Cañas, Luis A.

Publication type:

Article

Different Cis -Regulatory Elements Control the Tissue-Specific Contribution of Plastid ω-3 Desaturases to Wounding and Hormone Responses.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.727292

By:

Luján, María A.;
Soria-García, Ángel;
Claver, Ana;
Lorente, Patricia;
Rubio, María C.;
Picorel, Rafael;
Alfonso, Miguel

Publication type:

Article

Genome-Wide Identification, Evolution, and Expression Analysis of LBD Transcription Factor Family in Bread Wheat (Triticum aestivum L.).

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.721253

By:

Wang, Zhenyu;
Zhang, Ruoyu;
Cheng, Yue;
Lei, Pengzheng;
Song, Weining;
Zheng, Weijun;
Nie, Xiaojun

Publication type:

Article

Genome-Wide Identification and Analysis of the Phosphoenolpyruvate Carboxylase Gene Family in Suaeda aralocaspica , an Annual Halophyte With Single-Cellular C4 Anatomy.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.665279

By:

Cao, Jing;
Cheng, Gang;
Wang, Lu;
Maimaitijiang, Tayier;
Lan, Haiyan

Publication type:

Article

Targeting Cis -Regulatory Elements for Rice Grain Quality Improvement.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.705834

By:

Ding, Yu;
Zhu, Jiannan;
Zhao, Dongsheng;
Liu, Qiaoquan;
Yang, Qingqing;
Zhang, Tao

Publication type:

Article

Genome-Wide Characterization of B-Box Gene Family and Its Roles in Responses to Light Quality and Cold Stress in Tomato.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.698525

By:

Bu, Xin;
Wang, Xiujie;
Yan, Jiarong;
Zhang, Ying;
Zhou, Shunyuan;
Sun, Xin;
Yang, Youxin;
Ahammed, Golam Jalal;
Liu, Yufeng;
Qi, Mingfang;
Wang, Feng;
Li, Tianlai

Publication type:

Article

Comparative Genome Analysis Reveals Cis -Regulatory Elements on Gene-Sized Chromosomes of Ciliated Protists.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.775646

By:

Zheng, Weibo;
Dou, Huan;
Li, Chao;
Al-Farraj, Saleh A.;
Byerly, Adam;
Stover, Naomi A.;
Song, Weibo;
Chen, Xiao;
Li, Lifang

Publication type:

Article

An improved method for rapid analysis of promoters using modified sonication-assisted transient assay.

Published in:

3 Biotech, 2018, v. 8, n. 4, p. 1, doi. 10.1007/s13205-018-1219-x

By:

Chauhan, Chetan;
Joshi, Gauri;
Chaudhary, Darshna;
Das, Sandip

Publication type:

Article

Whole-genome analysis reveals distinct adaptation signatures to diverse environments in Chinese domestic pigs.

Published in:

Journal of Animal Science & Biotechnology, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s40104-024-01053-0

By:

Wang, Zhen;
Song, Bangmin;
Yao, Jianyu;
Li, Xingzheng;
Zhang, Yan;
Tang, Zhonglin;
Yi, Guoqiang

Publication type:

Article

Major niche transitions in Pooideae correlate with variation in photoperiodic flowering and evolution of CCT domain genes.

Published in:

Journal of Experimental Botany, 2022, v. 73, n. 12, p. 4079, doi. 10.1093/jxb/erac149

By:

Fjellheim, Siri;
Young, Darshan A;
Paliocha, Martin;
Johnsen, Sylvia Sagen;
Schubert, Marian;
Preston, Jill C

Publication type:

Article

stress-associated protein OsSAP8 modulates gibberellic acid biosynthesis by reducing the promotive effect of transcription factor OsbZIP58 on OsKO2.

Published in:

Journal of Experimental Botany, 2022, v. 73, n. 8, p. 2420, doi. 10.1093/jxb/erac027

By:

Li, Ming;
Zhang, Hui;
He, Dongli;
Damaris, Rebecca Njeri;
Yang, Pingfang

Publication type:

Article

Involvement of the R2R3-MYB transcription factor MYB21 and its homologs in regulating flavonol accumulation in Arabidopsis stamen.

Published in:

Journal of Experimental Botany, 2021, v. 72, n. 12, p. 4319, doi. 10.1093/jxb/erab156

By:

Zhang, Xueying;
He, Yuqing;
Li, Linying;
Liu, Hongru;
Hong, Gaojie

Publication type:

Article

CRISPR deletion of a SINE-VNTR-Alu (SVA_67) retrotransposon demonstrates its ability to differentially modulate gene expression at the MAPT locus.

Published in:

Frontiers in Neurology, 2023, p. 1, doi. 10.3389/fneur.2023.1273036

By:

Fröhlich, Alexander;
Hughes, Lauren S.;
Middlehurst, Ben;
Pfaff, Abigail L.;
Bubb, Vivien J.;
Koks, Sulev;
Quinn, John P.

Publication type:

Article