Works matching DE "ALTERNATIVE RNA splicing"

Results: 2476

Analysis of the splicing landscape of the frontal cortex in FTLD-TDP reveals subtype specific patterns and cryptic splicing.

Published in:

Acta Neuropathologica, 2025, v. 149, n. 1, p. 1, doi. 10.1007/s00401-025-02901-7

By:

Faura, Júlia;
Heeman, Bavo;
Pottier, Cyril;
Baker, Matthew C.;
DeJesus-Hernandez, Mariely;
Küçükali, Fahri;
Heiß, Laura;
Wynants, Sarah;
Van den Broeck, Marleen;
De Rijk, Peter;
De Pooter, Tim;
Joris, Geert;
Finch, NiCole A.;
Asmann, Yan;
Strazisar, Mojca;
Murray, Melissa E.;
Petrucelli, Leonard;
Oskarsson, Björn;
Sleegers, Kristel;
Josephs, Keith A.

Publication type:

Article

SNORD88B promotes proliferation and invasion of trophoblast by regulating G3BP1 m6 A modification and alternative splicing.

Published in:

Cellular & Molecular Life Sciences, 2025, v. 82, n. 1, p. 1, doi. 10.1007/s00018-025-05758-x

By:

Lu, Bingfeng;
Li, Qianhui;
Wang, Haiying;
Cheng, Jiachen;
Zhang, Yuran;
Chen, Xi;
Li, Baixue;
Zhao, Yang

Publication type:

Article

Mago nashi controls auxin‐mediated embryo patterning in Arabidopsis by regulating transcript abundance.

Published in:

New Phytologist, 2025, v. 247, n. 1, p. 14, doi. 10.1111/nph.70154

By:

Liu, Liping;
Gong, Wen;
Stöckl, Regina;
Denninger, Philipp;
Schwartz, Uwe;
Johnson, Mark A.;
Dresselhaus, Thomas

Publication type:

Article

Intron Retention, an Orchestrated Program of Gene Expression Regulation.

Published in:

BioEssays, 2025, v. 47, n. 4, p. 1, doi. 10.1002/bies.202400248

By:

Zhou, Hua;
Deng, Xing Wang

Publication type:

Article

Methylation of RBM39 by PRMT6 enhances resistance to Indisulam in non-small cell lung cancer by promoting alternative splicing of proto-oncogenes.

Published in:

PLoS Biology, 2025, v. 23, n. 6, p. 1, doi. 10.1371/journal.pbio.3002846

By:

Zhang, Tongjia;
Wang, Shujie;
Zhou, Yue;
Jiao, Zitao;
Lu, Kejia;
Liu, Xinyi;
Li, Hui;
Jiang, Wei;
Zhang, Xiaowei

Publication type:

Article

Mutations in the microexon splicing regulator srrm4 have minor phenotypic effects on zebrafish neural development Open Access.

Published in:

G3: Genes | Genomes | Genetics, 2025, v. 15, n. 5, p. 1, doi. 10.1093/g3journal/jkaf052

By:

Gupta, Tripti;
Margolin, Gennady;
Burgess, Harold A

Publication type:

Article

Full-length transcriptomes of 25 grassland plant species.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05280-6

By:

Jiang, Chongyi;
Huang, Zixia;
Meizoso, Cynthia;
Kumpfmüller, Gaby;
Wolf, Jochen B. W.;
Schielzeth, Holger

Publication type:

Article

Transcriptomics data for muscle development in Goats.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-04950-9

By:

Pei, Yu;
Xi, Rongsheng;
Jiang, Wenmeng;
Huang, Peng;
Liu, Mei

Publication type:

Article

Novel insights into the N 6-methyladenosine modification on circRNA in cancer.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1554888

By:

Xu, Qingling;
Jia, Yi;
Liu, Ying;
Wu, Bing;
Wang, Jianxun;
Ao, Xiang;
Ding, Wei

Publication type:

Article

Identification and characterization of long non-coding RNA (lncRNA) in wild and semi-wild cucumbers.

Published in:

BMC Plant Biology, 2025, p. 1, doi. 10.1186/s12870-025-06752-y

By:

Xia, Shi-Wei;
Song, Chang-Jiang;
Zheng, Xiao-Fang;
Zhang, Yuan;
Anwar, Wajid;
Dissanayaka, Dissanayakalage D.N.V.;
Zhu, Ping-Zhi;
Liu, Jun-Li;
Lai, Yun-Song

Publication type:

Article

The molecular impact of cigarette smoking resembles aging across tissues.

Published in:

Genome Medicine, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13073-025-01485-x

By:

Ramirez, Jose Miguel;
Ribeiro, Rogério;
Soldatkina, Oleksandra;
Moraes, Athos;
García-Pérez, Raquel;
Oliveros, Winona;
Ferreira, Pedro G.;
Melé, Marta

Publication type:

Article

Genus-Wide Pan-Genome Analysis of Oryza Calcium-Dependent Protein Kinase Genes and Their Related Kinases Highlights the Complexity of Protein Domain Architectures and Expression Dynamics.

Published in:

Plants (2223-7747), 2025, v. 14, n. 10, p. 1542, doi. 10.3390/plants14101542

By:

Shi, Fu;
Li, Li;
Chen, Mingjie;
Chang, Junli;
Tu, Min;
He, Guangyuan;
Li, Yin;
Yang, Guangxiao

Publication type:

Article

Full-Length Transcriptome Analysis of Sesbania cannabina Stem Response to Waterlogging Stress.

Published in:

Agronomy, 2025, v. 15, n. 5, p. 1197, doi. 10.3390/agronomy15051197

By:

He, Tingting;
Sun, Guoli;
He, Sunan;
Zhang, Zhenhua;
Dong, Jing;
Zhu, Xiaomei;
Dai, Jinying;
Wang, Kai;
Xing, Jincheng

Publication type:

Article

Regulatory mechanism of circular RNAs in brain and neurodegenerative diseases.

Published in:

Frontiers in Molecular Neuroscience, 2025, p. 1, doi. 10.3389/fnmol.2025.1507575

By:

Amelimojarad, Mandana;
Amelimojarad, Melika

Publication type:

Article

Functional, microarray and bioinformatics analyses of human papillomavirus E7-specific pathways in cervical carcinogenesis.

Published in:

European Journal of Gynaecological Oncology, 2025, v. 46, n. 5, p. 8, doi. 10.22514/ejgo.2025.061

By:

Nan Qi;
Takeo Minaguchi;
Kaoru Fujieda;
Asami Suto;
Hiroya Itagaki;
Yuri Tenjimbayashi;
Ayumi Shikama;
Nobutaka Tasaka;
Azusa Akiyama;
Sari Nakao;
Toyomi Satoh

Publication type:

Article

Circular RNAs as disease modifiers of complex neurologic disorders.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1577496

By:

Galli, Veronica;
Vinciguerra, Sara;
Biagioli, Marta;
Morandell, Jasmin

Publication type:

Article

Epigenetic Regulation and Therapeutic Targeting of Alternative Splicing Dysregulation in Cancer.

Published in:

Pharmaceuticals (14248247), 2025, v. 18, n. 5, p. 713, doi. 10.3390/ph18050713

By:

Lei, Yan;
Lai, Maode

Publication type:

Article

Linking expression and function of Drosophila type-I TGF-β receptor baboon isoforms: Multiple roles of BaboA isoform in shaping of the adult central nervous system.

Published in:

PLoS ONE, 2025, v. 20, n. 5, p. 1, doi. 10.1371/journal.pone.0318406

By:

Lee, Gyunghee G.;
Peterson, Aidan J.;
Kim, Myung-Jun;
Shimell, MaryJane;
O'Connor, Michael B.;
Park, Jae H.

Publication type:

Article

DNA Methylation and Alternative Splicing Safeguard Genome and Transcriptome After a Retrotransposition Burst in Arabidopsis thaliana.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4816, doi. 10.3390/ijms26104816

By:

Merkulov, Pavel;
Latypova, Anastasiia;
Tiurin, Kirill;
Serganova, Melania;
Kirov, Ilya

Publication type:

Article

Identification and Functional Analysis of a Key Gene in the CHH Gene Family for Glucose Metabolism in the Pacific White Shrimp Litopenaeus vannamei.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4612, doi. 10.3390/ijms26104612

By:

Zhang, Chengyi;
Zhang, Xiaojun;
Si, Shuqing;
Sun, Mingzhe;
Li, Aixin;
Yuan, Jianbo;
Li, Fuhua

Publication type:

Article

Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1434, doi. 10.1038/nsmb.2699

By:

Lovci, Michael T;
Ghanem, Dana;
Marr, Henry;
Arnold, Justin;
Gee, Sherry;
Parra, Marilyn;
Liang, Tiffany Y;
Stark, Thomas J;
Gehman, Lauren T;
Hoon, Shawn;
Massirer, Katlin B;
Pratt, Gabriel A;
Black, Douglas L;
Gray, Joe W;
Conboy, John G;
Yeo, Gene W

Publication type:

Article

Large-scale mapping of branchpoints in human pre-mRNA transcripts in vivo.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 7, p. 719, doi. 10.1038/nsmb.2327

By:

Taggart, Allison J;
DeSimone, Alec M;
Shih, Janice S;
Filloux, Madeleine E;
Fairbrother, William G

Publication type:

Article

Alternative Splicing in Glioblastoma and its Clinical Implication in Outcome Prediction.

Published in:

Neurology India, 2024, v. 72, n. 4, p. 846, doi. 10.4103/neurol-india.ni_1219_21

By:

Zheng, Ping;
Zhang, Xiaoxue;
Ren, Dabin;
Bai, Qingke

Publication type:

Article

Novel deleterious splicing variant in HFM1 causes gametogenesis defect and recurrent implantation failure: concerning the risk of chromosomal abnormalities in embryos.

Published in:

Journal of Assisted Reproduction & Genetics, 2023, v. 40, n. 7, p. 1689, doi. 10.1007/s10815-023-02761-8

By:

Tang, Fei;
Gao, Yang;
Li, KuoKuo;
Tang, DongDong;
Hao, Yan;
Lv, Mingrong;
Wu, Huan;
Cheng, Huiru;
Fei, Jia;
Jin, Zhiping;
Wang, Chao;
Xu, Yuping;
Wei, Zhaolian;
Zhou, Ping;
Zhang, Zhiguo;
He, Xiaojin;
Cao, Yunxia

Publication type:

Article

The effect of LARP7 on gene expression during osteogenesis.

Published in:

Molecular Biology Reports, 2025, v. 52, n. 1, p. 1, doi. 10.1007/s11033-024-10216-1

By:

Ozisin, M. Samil;
Imren, Gozde;
Aydin, Busra;
Karaosmanoglu, Beren;
Taskiran, Ekim Z.

Publication type:

Article

Mass-spectrometry-based quantitative proteomic analysis reveals that methylglyoxal and carnosine influence oxidative stress and RNA-processing associated proteins in renal proximal tubule epithelial cells.

Published in:

Molecular Biology Reports, 2025, v. 52, n. 1, p. 1, doi. 10.1007/s11033-024-10190-8

By:

Liu, Lei;
Zhang, Shiqi;
Xu, Juan;
Cao, Yadi;
Cui, Di;
Liu, Chao;
Shen, Bing;
Wu, Yonggui;
Zhang, Qiu

Publication type:

Article

Full-length transcriptome assembly of black amur bream (Megalobrama terminalis) as a reference resource.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-10056-z

By:

Liu, Kai;
Xie, Nan

Publication type:

Article

Decoding the genetic influence of CT60 non-coding polymorphism in CTLA-4 gene and sCTLA-4 biomarker with rheumatoid arthritis in the Indian population.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09949-w

By:

Shamala, V.;
Asha Devi, S.

Publication type:

Article

Ex vivo disease modelling of Rett syndrome: the transcriptomic and metabolomic implications of direct neuronal conversion.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09915-6

By:

Karaosmanoglu, Beren;
Imren, Gozde;
Ozisin, M. Samil;
Reçber, Tuba;
Simsek Kiper, Pelin Ozlem;
Haliloglu, Goknur;
Alikaşifoğlu, Mehmet;
Nemutlu, Emirhan;
Taskiran, Ekim Z.;
Utine, Gulen Eda

Publication type:

Article

Transcriptome profiling of longissimus dorsi during different prenatal stages to identify genes involved in intramuscular fat deposition in lean and obese pig breeds.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-023-09088-8

By:

Chen, Jun Feng;
Wang, Jing;
Chai, Jin;
Jin, Wei;
Ren, Qiao Ling;
Ma, Qiang;
Lu, Qing Xia;
Sun, Jia Jie;
Mo, De Lin;
Zhang, Jia Qing;
Xing, Bao Song

Publication type:

Article

LIGHT regulated gene expression in rheumatoid synovial fibroblasts.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09311-0

By:

Fukuda, Koji;
Miura, Yasushi;
Maeda, Toshihisa;
Hayashi, Shinya;
Kikuchi, Kenichi;
Takashima, Yoshinori;
Matsumoto, Tomoyuki;
Kuroda, Ryosuke

Publication type:

Article

An overview of cdc2‐like kinase 1 (Clk1) inhibitors and their therapeutic indications.

Published in:

Medicinal Research Reviews, 2023, v. 43, n. 2, p. 343, doi. 10.1002/med.21928

By:

ElHady, Ahmed K.;
El‐Gamil, Dalia S.;
Abadi, Ashraf H.;
Abdel‐Halim, Mohammad;
Engel, Matthias

Publication type:

Article

The 5′ untranslated region of the serotonin receptor 2C pre-mRNA generates miRNAs and is expressed in non-neuronal cells.

Published in:

Experimental Brain Research, 2013, v. 230, n. 4, p. 387, doi. 10.1007/s00221-013-3458-8

By:

Zhang, Zhaiyi;
Falaleeva, Marina;
Agranat-Tamir, Lily;
Pages, Amadis;
Eyras, Eduardo;
Sperling, Joseph;
Sperling, Ruth;
Stamm, Stefan

Publication type:

Article

Musashi-2 causes cardiac hypertrophy and heart failure by inducing mitochondrial dysfunction through destabilizing Cluh and Smyd1 mRNA.

Published in:

Basic Research in Cardiology, 2023, v. 118, n. 1, p. 1, doi. 10.1007/s00395-023-01016-y

By:

Singh, Sandhya;
Gaur, Aakash;
Sharma, Rakesh Kumar;
Kumari, Renu;
Prakash, Shakti;
Kumari, Sunaina;
Chaudhary, Ayushi Devendrasingh;
Prasun, Pankaj;
Pant, Priyanka;
Hunkler, Hannah;
Thum, Thomas;
Jagavelu, Kumaravelu;
Bharati, Pragya;
Hanif, Kashif;
Chitkara, Pragya;
Kumar, Shailesh;
Mitra, Kalyan;
Gupta, Shashi Kumar

Publication type:

Article

FUS and METTL3 collaborate to regulate RNA maturation, preventing unfolded protein response and promoting gastric cancer progression.

Published in:

Clinical & Experimental Medicine, 2024, v. 25, n. 1, p. 1, doi. 10.1007/s10238-024-01525-7

By:

Liu, Dongtao;
Ding, Bo;
Liu, Gang;
Yang, Zhijuan

Publication type:

Article

The role of BUD31 in clear cell renal cell carcinoma: prognostic significance, alternative splicing, and tumor immune environment.

Published in:

Clinical & Experimental Medicine, 2024, v. 24, n. 1, p. 1, doi. 10.1007/s10238-024-01451-8

By:

Wu, Xiaoliang;
Fan, Ruixin;
Zhang, Yangjun;
Duan, Chen;
Yao, Xiangyang;
Liu, Kai;
Lin, Dongxu;
Chen, Zhong

Publication type:

Article

An update on transcriptional and post-translational regulation of brain voltage-gated sodium channels.

Published in:

Amino Acids, 2016, v. 48, n. 3, p. 641, doi. 10.1007/s00726-015-2122-y

By:

Onwuli, Donatus;
Beltran-Alvarez, Pedro

Publication type:

Article

Regulation of alternative splicing in Catharanthus roseus in response to methyl jasmonate modulation during development and stress resilience.

Published in:

Functional Plant Biology, 2025, v. 52, n. 4, p. 1, doi. 10.1071/FP25017

By:

Abulfaraj, Aala A.;
Al-Andal, Abeer

Publication type:

Article

Epigenetics and alternative splicing in cancer: old enemies, new perspectives.

Published in:

Biochemical Journal, 2024, v. 481, n. 21, p. 1497, doi. 10.1042/BCJ20240221

By:

Pandkar, Madhura R.;
Shukla, Sanjeev

Publication type:

Article

Thermoregulated transcriptomics: the molecular basis and biological significance of temperature-dependent alternative splicing.

Published in:

Biochemical Journal, 2024, v. 481, n. 15, p. 999, doi. 10.1042/bcj20230410

By:

Haltenhof, Tom;
Preußner, Marco;
Heyd, Florian

Publication type:

Article

Identification and characterization of the Doublesex gene and its mRNA isoforms in the brine shrimp Artemia franciscana.

Published in:

Biochemical Journal, 2023, v. 480, n. 5, p. 385, doi. 10.1042/BCJ20220495

By:

Wen-Tao Wu;
Lian-Ying Xu;
Zhi-Jun Yan;
Ning Bi;
Cai-Yuan Cheng;
Fan Yang;
Wei-Jun Yang;
Jin-Shu Yang

Publication type:

Article

Binding partners regulate unfolding of myosin VI to activate the molecular motor.

Published in:

Biochemical Journal, 2022, v. 479, n. 13, p. 1409, doi. 10.1042/BCJ20220025

By:

dos Santos, Ália;
Fili, Natalia;
Hari-Gupta, Yukti;
Gough, Rosemarie E.;
Lin Wang;
Martin-Fernandez, Marisa;
Aaron, Jesse;
Wait, Eric;
Teng-Leong Chew;
Toseland, Christopher P.

Publication type:

Article

Distinct interactors define the p63 transcriptional signature in epithelial development or cancer.

Published in:

Biochemical Journal, 2022, v. 479, n. 12, p. 1375, doi. 10.1042/BCJ20210737

By:

Pecorari, Rosalba;
Bernassola, Francesca;
Melino, Gerry;
Candi, Eleonora

Publication type:

Article

TSIS: an R package to infer alternative splicing isoform switches for time-series data.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3308, doi. 10.1093/bioinformatics/btx411

By:

Guo, Wenbin;
Calixto, Cristiane P. G.;
Brown, John W. S.;
Runxuan Zhang

Publication type:

Article

Integrative deep models for alternative splicing.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i274, doi. 10.1093/bioinformatics/btx268

By:

Jha, Anupama;
Gazzara, Matthew R.;
Barash, Yoseph

Publication type:

Article

ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2499, doi. 10.1093/bioinformatics/btw068

By:

Mall, Tarun;
Eckstein, John;
Norris, David;
Vora, Hiral;
Freese, Nowlan H.;
Loraine, Ann E.

Publication type:

Article

Isoform-level ribosome occupancy estimation guided by transcript abundance with Ribomap.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. 1880, doi. 10.1093/bioinformatics/btw085

By:

Hao Wang;
McManus, Joel;
Kingsford, Carl

Publication type:

Article

Analysis of differential splicing suggests different modes of short-term splicing regulation.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. i147, doi. 10.1093/bioinformatics/btw283

By:

Topa, Hande;
Honkela, Antti

Publication type:

Article

SplAdder. identification, quantification and testing of alternative splicing events from RNA-Seq data.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. 1840, doi. 10.1093/bioinformatics/btw076

By:

Kahles, André;
Cheng Soon Ong;
Yi Zhong;
Rätsch, Gunnar

Publication type:

Article

Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2a and ZNF451 in mammals.

Published in:

Bioinformatics, 2015, v. 31, n. 14, p. 2257, doi. 10.1093/bioinformatics/btv132

By:

Abascal, Federico;
Tress, Michael L.;
Valencia, Alfonso

Publication type:

Article