Works matching DE "GENETIC transcription regulation"

Results: 3463

Integrated Analysis of Long Non-Coding RNAs and mRNAs Reveals Key Trans-Target Genes Associated with Heat Stress Response in Rhododendron delavayi.

Published in:

Life (2075-1729), 2025, v. 15, n. 5, p. 697, doi. 10.3390/life15050697

By:

Liu, Changming;
Liu, Yang;
Zhang, Xinyue;
An, Lujie;
Tian, Zhiguo

Publication type:

Article

Dissecting the Emerging Regulatory and Mechanistic Paradigms of Transcribed Conserved Non-Coding Elements in Breast Cancer.

Published in:

Biomolecules (2218-273X), 2025, v. 15, n. 5, p. 627, doi. 10.3390/biom15050627

By:

Zhu, Wenyong;
Huang, Hao;
Li, Qiong;
Gu, Yu;
Zhang, Rongxin;
Shu, Huiling;
Zhao, Yunqi;
Liu, Hongde;
Sun, Xiao

Publication type:

Article

The DNA Topoisomerase 1 Contributes to Stress Response in Saccharomyces cerevisiae , Regardless Its Catalytic Activity.

Published in:

Biology (2079-7737), 2025, v. 14, n. 5, p. 499, doi. 10.3390/biology14050499

By:

D'Alfonso, Anna;
Egidi, Alessandra;
Proietti, Ludovica;
Camilloni, Giorgio

Publication type:

Article

BIT: Bayesian Identification of Transcriptional regulators from epigenomics-based query region sets.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60269-4

By:

Lu, Zeyu;
Xu, Lin;
Wang, Xinlei

Publication type:

Article

Molecular subtypes based on ferroptosis-related genes and tumor microenvironment infiltration characterization in small cell lung cancer.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1574434

By:

Wang, Xin;
Xu, Zhenyi;
Lin, Zhen;
Wu, Dawei;
Tang, Yu;
Pei, Zhihua;
Gao, Yibo;
He, Jie

Publication type:

Article

Genetic Determinants of Colonic Diverticulosis—A Systematic Review.

Published in:

Genes, 2025, v. 16, n. 5, p. 581, doi. 10.3390/genes16050581

By:

Nehring, Piotr;
Przybyłkowski, Adam

Publication type:

Article

Olig1/2 Drive Astrocytic Glioblastoma Proliferation Through Transcriptional Co-Regulation of Various Cyclins.

Published in:

Genes, 2025, v. 16, n. 5, p. 573, doi. 10.3390/genes16050573

By:

Tian, Yu;
Wang, Ziwu;
Sun, Mengge;
Li, Jialin;
Zheng, Wenhui;
Yang, Feihong;
Zhang, Zhuangzhi

Publication type:

Article

The Role of AP2/ERF Transcription Factors in Plant Responses to Biotic Stress.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4921, doi. 10.3390/ijms26104921

By:

Su, Ze-Lin;
Li, Ao-Mei;
Wang, Miao;
Qin, Cui-Xian;
Pan, You-Qiang;
Liao, Fen;
Chen, Zhong-Liang;
Zhang, Bao-Qing;
Cai, Wen-Guo;
Huang, Dong-Liang

Publication type:

Article

Jasmonates in the Ethylene-Induced Resistance of Detached Citrus Fruits to Peel Damage.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4805, doi. 10.3390/ijms26104805

By:

Lafuente, María T.;
Sampedro, Raúl;
Romero, Paco

Publication type:

Article

Genome-Wide Characterization of WRKY Gene Family in Camellia chekiangoleosa Identifies Potential Regulatory Components in Pigment Biosynthesis Pathways.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4622, doi. 10.3390/ijms26104622

By:

Liu, Zhenyu;
Peng, Yixuan;
Qu, Yanshu;
Huang, Bin;
Gong, Chun;
Wen, Qiang

Publication type:

Article

Rhizoviticin is an alphaproteobacterial tailocin that mediates biocontrol of grapevine crown gall disease.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad003

By:

Ishii, Tomoya;
Tsuchida, Natsuki;
Hemelda, Niarsi Merry;
Saito, Kirara;
Bao, Jiyuan;
Watanabe, Megumi;
Toyoda, Atsushi;
Matsubara, Takehiro;
Sato, Mayuko;
Toyooka, Kiminori;
Ishihama, Nobuaki;
Shirasu, Ken;
Matsui, Hidenori;
Toyoda, Kazuhiro;
Ichinose, Yuki;
Hayashi, Tetsuya;
Kawaguchi, Akira;
Noutoshi, Yoshiteru

Publication type:

Article

Impact of the 294 bp SINE Insertion in 5′UTR of the GLYATL3 Gene on Gene Expression and Phenotypic Variation.

Published in:

Animals (2076-2615), 2025, v. 15, n. 10, p. 1375, doi. 10.3390/ani15101375

By:

Zhou, Chenyu;
Qiao, Suwei;
Zheng, Yao;
Yu, Miao;
Chen, Hong;
Chen, Cai;
Moawad, Ali Shoaib;
Gao, Bo;
Song, Chengyi;
Wang, Xiaoyan

Publication type:

Article

Small-RNA loading licenses Argonaute for assembly into a transcriptional silencing complex.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 4, p. 328, doi. 10.1038/nsmb.2979

By:

Holoch, Daniel;
Moazed, Danesh

Publication type:

Article

Keeping autophagy at bay.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 4, p. 282, doi. 10.1038/nsmb.3009

By:

Ghosh, Shubhendu

Publication type:

Article

Molecular basis of FIR-mediated c-myc transcriptional control.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 9, p. 1058, doi. 10.1038/nsmb.1883

By:

Cukier, Cyprian D;
Hollingworth, David;
Martin, Stephen R;
Kelly, Geoff;
Díaz-Moreno, Irene;
Ramos, Andres

Publication type:

Article

DNA torsional stress propagates through chromatin fiber and participates in transcriptional regulation.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 2, p. 123, doi. 10.1038/nsmb0208-123

By:

Lavelle, Christophe

Publication type:

Article

Structure and TBP binding of the Mediator head subcomplex Med8–Med18–Med20.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 10, p. 895, doi. 10.1038/nsmb1143

By:

Larivière, Laurent;
Geiger, Sebastian;
Hoeppner, Sabine;
Röther, Susanne;
Sträßer, Katja;
Cramer, Patrick

Publication type:

Article

Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 9, p. 852, doi. 10.1038/nsmb1131

By:

Steward, Melissa M.;
Lee, Jung-Shin;
O'Donovan, Aisling;
Wyatt, Matt;
Bernstein, Bradley E;
Shilatifard, Ali

Publication type:

Article

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 3, p. 185, doi. 10.1038/nrmicro2261

By:

Dillon, Shane C.;
Dorman, Charles J.

Publication type:

Article

miR-526b-5p/c-Myc/Foxp1 participates in recurrent spontaneous abortion by regulating the proliferation, migration, and invasion of trophoblasts.

Published in:

Journal of Assisted Reproduction & Genetics, 2023, v. 40, n. 7, p. 1559, doi. 10.1007/s10815-023-02793-0

By:

Luo, Li;
Yao, Lu;
Xie, Youlong;
Chen, Enxiang;
Ding, Yubin;
Ge, Luxing

Publication type:

Article

A New Widely Distributed Nuclear Protein Involved in the Regulation of Transcription Catalyzed by RNA Polymerase II.

Published in:

Doklady Biochemistry & Biophysics, 2000, v. 375, n. 1-6, p. 231, doi. 10.1023/A:1026623906892

By:

Georgieva, S. G.;
Nabirochkina, E. N.;
Georgiev, P. G.;
Soldatov, A. V.

Publication type:

Article

Multifunctional Intrinsically Disordered Regions in Transcription Factors.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 21, p. 1, doi. 10.1002/chem.202203369

By:

Már, Matti;
Nitsenko, Kateryna;
Heidarsson, Pétur O.

Publication type:

Article

Glucosylated 5‐Hydroxymethylpyrimidines as Epigenetic DNA Bases Regulating Transcription and Restriction Cleavage.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 31, p. 1, doi. 10.1002/chem.202200911

By:

Chakrapani, Aswathi;
Ruiz‐Larrabeiti, Olatz;
Pohl, Radek;
Svoboda, Martin;
Krásný, Libor;
Hocek, Michal

Publication type:

Article

Specificity of the Metalloregulator CueR for Monovalent Metal Ions: Possible Functional Role of a Coordinated Thiol?

Published in:

Angewandte Chemie, 2015, v. 127, n. 52, p. 15982, doi. 10.1002/ange.201508555

By:

Szunyogh, Dániel;
Szokolai, Hajnalka;
Thulstrup, Peter W.;
Larsen, Flemming H.;
Gyurcsik, Béla;
Christensen, Niels Johan;
Stachura, Monika;
Hemmingsen, Lars;
Jancsó, Attila

Publication type:

Article

Controlled Transcription of Exogenous mRNA in Platelets Using Protocells.

Published in:

Angewandte Chemie, 2015, v. 127, n. 46, p. 13794, doi. 10.1002/ange.201506500

By:

Chan, Vivienne;
Novakowski, Stefanie K.;
Law, Simon;
Klein ‐ Bosgoed, Christa;
Kastrup, Christian J.

Publication type:

Article

Characterization and expression analysis of the MADS-box gene AGL8 in cotton: insights into gene function differentiation in plant growth and stress resistance.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09902-x

By:

Wang, Zhicheng;
Cao, Yuefen;
Jiang, Yurong;
Ding, Mingquan;
Rong, Junkang

Publication type:

Article

Assessment of housekeeping genes stability for gene transcription regulation analysis of Spodoptera littoralis (Lepidoptera: Noctuidae) under Spodoptera littoralis nucleopolyhedrovirus viral infection.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09975-8

By:

Elmenofy, Wael;
Abdelsattar, Mohamed;
Kesba, Hosny H.;
El-Maksoud, Reem M. Abd

Publication type:

Article

Recent advancements in the role of histone acetylation dynamics to improve stress responses in plants.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09300-3

By:

Bajpai, Sanjay Kumar;
Nisha;
Pandita, Shivali;
Bahadur, Anand;
Verma, Praveen C.

Publication type:

Article

Identification and characterization of responsive genes in rice during compatible interactions with pathogenic pathovars of <italic>Xanthomonas oryzae</italic>.

Published in:

European Journal of Plant Pathology, 2018, v. 151, n. 1, p. 141, doi. 10.1007/s10658-017-1363-x

By:

Khojasteh, Moein;
Khahani, Bahman;
Taghavi, Mohsen;
Tavakol, Elahe

Publication type:

Article

Targeting key proteins involved in transcriptional regulation for cancer therapy: Current strategies and future prospective.

Published in:

Medicinal Research Reviews, 2022, v. 42, n. 4, p. 1607, doi. 10.1002/med.21886

By:

Pei, Haixiang;
Guo, Weikai;
Peng, Yangrui;
Xiong, Hai;
Chen, Yihua

Publication type:

Article

Unveiling the Biochar-Respiratory Growth of Methanosarcina acetivorans Involving Extracellular Polymeric Substances.

Published in:

Microbial Ecology, 2023, v. 86, n. 4, p. 2970, doi. 10.1007/s00248-023-02294-8

By:

Huang, Rui;
Tang, Chuyan;
Zhao, Yameng;
Liu, Lina;
Chen, Jiazhe;
Shi, Zhirui;
Yan, Zhen

Publication type:

Article

Activity‐regulated gene expression across cell types of the mouse hippocampus.

Published in:

Hippocampus, 2023, v. 33, n. 9, p. 1009, doi. 10.1002/hipo.23548

By:

Nelson, Erik D.;
Maynard, Kristen R.;
Nicholas, Kyndall R.;
Tran, Matthew N.;
Divecha, Heena R.;
Collado‐Torres, Leonardo;
Hicks, Stephanie C.;
Martinowich, Keri

Publication type:

Article

Transcriptional regulation of Nox4 by histone deacetylases in human endothelial cells.

Published in:

Basic Research in Cardiology, 2012, v. 107, n. 5, p. 1, doi. 10.1007/s00395-012-0283-3

By:

Siuda, Daniel;
Zechner, Ulrich;
El Hajj, Nady;
Prawitt, Dirk;
Langer, David;
Xia, Ning;
Horke, Sven;
Pautz, Andrea;
Kleinert, Hartmut;
Förstermann, Ulrich;
Li, Huige

Publication type:

Article

Chromatin remodeling by polyamines and polyamine analogs.

Published in:

Amino Acids, 2014, v. 46, n. 3, p. 595, doi. 10.1007/s00726-013-1550-9

By:

Pasini, Alice;
Caldarera, Claudio;
Giordano, Emanuele

Publication type:

Article

Transcriptional regulation and functional implication of S100P in cancer.

Published in:

Amino Acids, 2011, v. 41, n. 4, p. 885, doi. 10.1007/s00726-010-0495-5

By:

Gibadulinova, Adriana;
Tothova, Veronika;
Pastorek, Jaromir;
Pastorekova, Silvia

Publication type:

Article

Functional and transcriptional regulation of the anthocyanidin acyl modifier gene Gs5AT of Gentiana sino-ornata.

Published in:

Functional Plant Biology, 2024, v. 51, n. 11, p. 1, doi. 10.1071/FP23143

By:

Meng, Han;
Chen, Siqi;
Wu, Yanmei;
Jin, Xuehua

Publication type:

Article

Physiological and transcriptome analysis of Dendrobium officinale under low nitrogen stress.

Published in:

Functional Plant Biology, 2023, v. 50, n. 4, p. 314, doi. 10.1071/FP22061

By:

Wu, Hangtao;
Li, Jin;
Pu, Qian;
Mi, Chunyi;
Zeng, Guohong;
Chen, Ying;
Kong, Dedong;
Zuo, Xiaorong;
Hu, Xiufang;
Li, Ou

Publication type:

Article

The molecular events underpinning cultivar differences in melatonin counteracting salt damage in Phaseolus vulgaris.

Published in:

Functional Plant Biology, 2022, v. 49, n. 2, p. 201, doi. 10.1071/FP21126

By:

Han, Yiqiang;
Gao, Yamei;
Li, Ming;
Du, Yanli;
Zhang, Yuxian;
Zhang, Wenhui;
Du, Jidao

Publication type:

Article

Comprehensive analysis of 14-3-3 family genes and their responses to cold and drought stress in cucumber.

Published in:

Functional Plant Biology, 2021, v. 48, n. 12, p. 1264, doi. 10.1071/FP21022

By:

Mingyuan Xu;
Zhaoyang Hu;
Wei Lai;
Shiqiang Liu;
Hao Wu;
Yong Zhou

Publication type:

Article

High-affinity binding site for a specific nuclear protein in the human IgM gene.

Published in:

Nature, 1985, p. 289, doi. 10.1038/314289a0

By:

Hennighausen, Lothar;
Siebenlist, Ulrich;
Danner, David;
Leder, Philip;
Rawlins, Dan;
Rosenfeld, Philip;
Kelly Jr, Thomas

Publication type:

Article

Independent effects of growth hormone releasing factor on growth hormone release and gene transcription.

Published in:

Nature, 1985, p. 279, doi. 10.1038/314279a0

By:

Barinaga, Marcia;
Bilezikjian, Louise M.;
Vale, Wylie W.;
Rosenfeld, Michael G.;
Evans, Ronald M.

Publication type:

Article

Technological advancements in the CRISPR toolbox for improving plant salt tolerance.

Published in:

Discover Agriculture, 2024, v. 2, n. 1, p. 1, doi. 10.1007/s44279-024-00105-3

By:

Sharma, Madhvi;
Sidhu, Amanpreet K.;
Samota, Mahesh Kumar;
Shah, Priya;
Pandey, Manish K.;
Gangurde, Sunil S.

Publication type:

Article

Novel insights into the recognition of acetylated histone H4 tail by the TRIM24 PHD-Bromo module.

Published in:

Biochemical Journal, 2023, v. 480, n. 9, p. 629, doi. 10.1042/BCJ20230011

By:

Bardhan, Ishita;
Barman, Soumen;
Roy, Anirban;
Sudhamalla, Babu

Publication type:

Article

TRFBA: an algorithm to integrate genome-scale metabolic and transcriptional regulatory networks with incorporation of expression data.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 1057, doi. 10.1093/bioinformatics/btw772

By:

Motamedian, Ehsan;
Mohammadi, Maryam;
Shojaosadati, Seyed Abbas;
Heydari, Mona

Publication type:

Article

BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3758, doi. 10.1093/bioinformatics/btv466

By:

De Witte, Dieter;
Van de Velde, Jan;
Decap, Dries;
Van Bel, Michiel;
Audenaert, Pieter;
Demeester, Piet;
Dhoedt, Bart;
Vandepoele, Klaas;
Fostier, Jan

Publication type:

Article

INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2829, doi. 10.1093/bioinformatics/btv288

By:

de Pretis, Stefano;
Kress, Theresia;
Morelli, Marco J.;
Melloni, Giorgio E. M.;
Riva, Laura;
Amati, Bruno;
Pelizzola, Mattia

Publication type:

Article

Modeling time-dependent transcription effects of HER2 oncogene and discovery of a role for E2F2 in breast cancer cell-matrix adhesion.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3036, doi. 10.1093/bioinformatics/btu400

By:

Bollig-Fischer, Aliccia;
Marchetti, Luca;
Mitrea, Cristina;
Wu, Jiusheng;
Kruger, Adéle;
Manca, Vincenzo;
Drăghici, Sorin

Publication type:

Article

Estimating the activity of transcription factors by the effect on their target genes.

Published in:

2014

By:

Schacht, Theresa;
Oswald, Marcus;
Eils, Roland;
Eichmüller, Stefan B.;
König, Rainer

Publication type:

Case Study

MIRA: mutual information-based reporter algorithm for metabolic networks.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i175, doi. 10.1093/bioinformatics/btu290

By:

Cicek, A. Ercument;
Roeder, Kathryn;
Ozsoyoglu, Gultekin

Publication type:

Article

TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2292, doi. 10.1093/bioinformatics/btt381

By:

Nariai, Naoki;
Hirose, Osamu;
Kojima, Kaname;
Nagasaki, Masao

Publication type:

Article