Works matching DE "EPIGENOMICS"

Results: 4869

Impact of child sex abuse on adult psychopathology: A genetically and epigenetically informed investigation.

Published in:

2013

By:

Beach, Steven R. H.;
Brody, Gene H.;
Lei, Man Kit;
Gibbons, Frederick X.;
Gerrard, Meg;
Simons, Ronald L.;
Cutrona, Carolyn E.;
Philibert, Robert A.

Publication type:

Journal Article

Genetics and epigenetics in family context: Introduction to the special section.

Published in:

2013

By:

Beach, Steven R. H.;
Whisman, Mark A.

Publication type:

Journal Article

Genomics and Your Health - U.S. Centers for Disease Control and Prevention.

Published in:

Journal of Consumer Health on the Internet, 2025, v. 29, n. 2, p. 257, doi. 10.1080/15398285.2025.2494947

By:

Bihn, Clara

Publication type:

Article

Epigenetic Therapies in Melanoma—Targeting DNA Methylation and Histone Modification.

Published in:

Biomedicines, 2025, v. 13, n. 5, p. 1188, doi. 10.3390/biomedicines13051188

By:

Tigu, Adrian Bogdan;
Ivancuta, Andrei;
Uhl, Andrada;
Sabo, Alexandru Cristian;
Nistor, Madalina;
Mureșan, Ximena-Maria;
Cenariu, Diana;
Timis, Tanase;
Diculescu, Doru;
Gulei, Diana

Publication type:

Article

BIT: Bayesian Identification of Transcriptional regulators from epigenomics-based query region sets.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60269-4

By:

Lu, Zeyu;
Xu, Lin;
Wang, Xinlei

Publication type:

Article

Epigenetic Regulation of Human Vascular Calcification.

Published in:

Genes, 2025, v. 16, n. 5, p. 506, doi. 10.3390/genes16050506

By:

Kajuluri, Lova Prasadareddy;
Guo, Yugene Young;
Lee, Sujin;
Christof, Michael;
Malhotra, Rajeev

Publication type:

Article

Boosting Immunity Through Nutrition and Gut Health: A Narrative Review on Managing Allergies and Multimorbidity.

Published in:

Nutrients, 2025, v. 17, n. 10, p. 1685, doi. 10.3390/nu17101685

By:

Andreou, Eleni;
Papaneophytou, Christos

Publication type:

Article

annATAC: automatic cell type annotation for scATAC-seq data based on language model.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02244-5

By:

Cui, Lingyu;
Wang, Fang;
Li, Hongfei;
Liu, Qiaoming;
Zhou, Murong;
Wang, Guohua

Publication type:

Article

The epigenetic impact of lifestyle factors on metabolic syndrome: A systematic review.

Published in:

Journal of Clinical Sciences, 2025, v. 22, n. 2, p. 108, doi. 10.4103/jcls.jcls_28_25

By:

Adedeji, Temitope Gabriel

Publication type:

Article

Cycles in spatial and temporal chromosomal organization driven by the circadian clock.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 10, p. 1206, doi. 10.1038/nsmb.2667

By:

Aguilar-Arnal, Lorena;
Hakim, Ofir;
Patel, Vishal R;
Baldi, Pierre;
Hager, Gordon L;
Sassone-Corsi, Paolo

Publication type:

Article

Young-Onset Pancreatobiliary Cancers—Whereto from Here?

Published in:

Indian Journal of Surgery, 2022, v. 84, p. 349, doi. 10.1007/s12262-022-03533-x

By:

Barreto, Savio George

Publication type:

Article

Role of epigenetic regulation in diminished ovarian reserve.

Published in:

2025

By:

Chen, Wen;
Dong, Li;
Wei, Chaofeng;
Wu, Haicui

Publication type:

Literature Review

The roles of chromatin regulatory factors in endometriosis.

Published in:

Journal of Assisted Reproduction & Genetics, 2024, v. 41, n. 4, p. 863, doi. 10.1007/s10815-024-03026-8

By:

Luo, Liumei;
Zhao, Ling;
Cui, Lanyu;
Peng, Chuyu;
Ou, Shanshan;
Zeng, Yan;
Liu, Bo

Publication type:

Article

Profiling the DNA methylation patterns of imprinted genes in abnormal semen samples by next-generation bisulfite sequencing.

Published in:

Journal of Assisted Reproduction & Genetics, 2020, v. 37, n. 9, p. 2211, doi. 10.1007/s10815-020-01839-x

By:

He, Wanhong;
Sun, Υuhua;
Zhang, Sufen;
Feng, Xing;
Xu, Minjie;
Dai, Jianfeng;
Ni, Xiaohua;
Wang, Xin;
Wu, Qihan

Publication type:

Article

Molecular signature of eutopic endometrium in endometriosis based on the multi-omics integrative synthesis.

Published in:

Journal of Assisted Reproduction & Genetics, 2020, v. 37, n. 7, p. 1593, doi. 10.1007/s10815-020-01833-3

By:

Prašnikar, Erika;
Knez, Jure;
Kovačič, Borut;
Kunej, Tanja

Publication type:

Article

Reproductive biology and medicine 2015-the year in review.

Published in:

2015

By:

Albertini, David

Publication type:

Editorial

Integrated analysis of transcriptome, methylome and copy number aberrations data of marginal zone lymphoma and follicular lymphoma in dog.

Published in:

Veterinary & Comparative Oncology, 2020, v. 18, n. 4, p. 645, doi. 10.1111/vco.12588

By:

Giannuzzi, Diana;
Giudice, Luca;
Marconato, Laura;
Ferraresso, Serena;
Giugno, Rosalba;
Bertoni, Francesco;
Aresu, Luca

Publication type:

Article

T677T Methylenetetrahydrofolate Reductase Single Nucleotide Polymorphisms Increased Prevalence in a Subgroup of Infertile Patients with Endometriosis.

Published in:

Journal of Women's Health (15409996), 2022, v. 31, n. 10, p. 1501, doi. 10.1089/jwh.2022.0019

By:

Clément, Patrice;
Alvarez, Silvia;
Jacquesson-Fournols, Laetitia;
Cornet, Dominique;
Clément, Arthur;
Brack, Michel;
Lalau-Keraly, Marc;
Delafontaine, Didier;
Cohen, Marc;
Menezo, Yves

Publication type:

Article

Global epigenetic changes of histone modification under environmental stresses in rice root.

Published in:

Chromosome Research, 2019, v. 27, n. 4, p. 287, doi. 10.1007/s10577-019-09611-3

By:

Polosoro, Aqwin;
Enggarini, Wening;
Ohmido, Nobuko

Publication type:

Article

Predicting chromatin architecture from models of polymer physics.

Published in:

Chromosome Research, 2017, v. 25, n. 1, p. 25, doi. 10.1007/s10577-016-9545-5

By:

Bianco, Simona;
Chiariello, Andrea;
Annunziatella, Carlo;
Esposito, Andrea;
Nicodemi, Mario

Publication type:

Article

Targeting epigenetic modifications in Parkinson's disease therapy.

Published in:

Medicinal Research Reviews, 2023, v. 43, n. 5, p. 1748, doi. 10.1002/med.21962

By:

Zhang, Dan;
Zhang, Jifa;
Wang, Yuxi;
Wang, Guan;
Tang, Pan;
Liu, Yun;
Zhang, Yiwen;
Ouyang, Liang

Publication type:

Article

Epigenetic modification in alcohol‐related liver diseases.

Published in:

Medicinal Research Reviews, 2022, v. 42, n. 4, p. 1463, doi. 10.1002/med.21881

By:

Ajoolabady, Amir;
Aslkhodapasandhokmabad, Hamid;
Zhou, Yuan;
Ren, Jun

Publication type:

Article

Circulating monocytes: an appropriate model for bone-related study.

Published in:

Osteoporosis International, 2015, v. 26, n. 11, p. 2561, doi. 10.1007/s00198-015-3250-7

By:

Zhou, Y.;
Deng, H.-W.;
Shen, H.

Publication type:

Article

Mechanisms of migraine as a chronic evolutive condition.

Published in:

Journal of Headache & Pain, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s10194-019-1066-0

By:

Andreou, Anna P.;
Edvinsson, Lars

Publication type:

Article

Advances in genetics of migraine.

Published in:

Journal of Headache & Pain, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s10194-019-1017-9

By:

Sutherland, Heidi G.;
Albury, Cassie L.;
Griffiths, Lyn R.

Publication type:

Article

Association of DNA methylation in BDNF with escitalopram treatment response in depressed Chinese Han patients.

Published in:

European Journal of Clinical Pharmacology, 2018, v. 74, n. 8, p. 1011, doi. 10.1007/s00228-018-2463-z

By:

Wang, Peipei;
Zhang, Cuizhen;
Lv, Qinyu;
Bao, Chenxi;
Sun, Hong;
Ma, Guo;
Fang, Yiru;
Yi, Zhenghui;
Cai, Weimin

Publication type:

Article

Epigenetic changes and their relationship to somaclonal variation: a need to monitor the micropropagation of plantation crops.

Published in:

Functional Plant Biology, 2020, v. 47, n. 6, p. 508, doi. 10.1071/FP19077

By:

Azizi, Parisa;
Hanafi, Mohamed M.;
Sahebi, Mahbod;
Harikrishna, Jennifer A.;
Taheri, Sima;
Yassoralipour, Ali;
Nasehi, Abbas

Publication type:

Article

Epigenomic annotation-based interpretation of genomic data: from enrichment analysis to machine learning.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3323, doi. 10.1093/bioinformatics/btx414

By:

Dozmorov, Mikhail G.

Publication type:

Article

EpiCompare: an online tool to define and explore genomic regions with tissue or cell type-specific epigenomic features.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3268, doi. 10.1093/bioinformatics/btx371

By:

Yu He;
Ting Wang

Publication type:

Article

GLANET: genomic loci annotation and enrichment tool.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2818, doi. 10.1093/bioinformatics/btx326

By:

Otlu, Burçak;
Firtina, Can;
Keleş, Sündüz;
Tastan, Oznur

Publication type:

Article

Association testing of bisulfite-sequencing methylation data via a Laplace approximation.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i325, doi. 10.1093/bioinformatics/btx248

By:

Weissbrod, Omer;
Rahmani, Elior;
Schweiger, Regev;
Rosset, Saharon;
Halperin, Eran

Publication type:

Article

DeepBlueR: large-scale epigenomic analysis in R.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2063, doi. 10.1093/bioinformatics/btx099

By:

Albrecht, Felipe;
List, Markus;
Bock, Christoph;
Lengauer, Thomas

Publication type:

Article

GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1870, doi. 10.1093/bioinformatics/btx059

By:

Rahmani, Elior;
Yedidim, Reut;
Shenhav, Liat;
Schweiger, Regev;
Weissbrod, Omer;
Zaitlen, Noah;
Halperin, Eran

Publication type:

Article

VEXOR: an integrative environment for prioritization of functional variants in fine-mapping analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 9, p. 1389, doi. 10.1093/bioinformatics/btw826

By:

Lemaçon, Audrey;
Beauparlant, Charles Joly;
Soucy, Penny;
Allen, Jamie;
Easton, Douglas;
Kraft, Peter;
Simard, Jacques;
Droit, Arnaud

Publication type:

Article

QCEWAS: automated quality control of results of epigenome-wide association studies.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1243, doi. 10.1093/bioinformatics/btw766

By:

Van der Most, Peter J.;
Küpers, Leanne K.;
Snieder, Harold;
Nolte, Ilja

Publication type:

Article

ChAsE: chromatin analysis and exploration tool.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3324, doi. 10.1093/bioinformatics/btw382

By:

Younesy, Hamid;
Nielsen, Cydney B.;
Lorincz, Matthew C.;
Jones, Steven J. M.;
Karimi, Mohammad M.;
Möller, Torsten

Publication type:

Article

Higher order methylation features for clustering and prediction in epigenomic studies.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i405, doi. 10.1093/bioinformatics/btw432

By:

Kapourani, Chantriolnt-Andreas;
Sanguinetti, Guido

Publication type:

Article

SNPhood: investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2359, doi. 10.1093/bioinformatics/btw127

By:

Arnold, Christian;
Bhat, Pooja;
Zaugg, Judith B.

Publication type:

Article

GenomeRunner web server: regulatory similarity and differences define the functional impact of SNP sets.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2256, doi. 10.1093/bioinformatics/btw169

By:

Dozmorov, Mikhail G.;
Cara, Lukas R.;
Giles, Cory B.;
Wren, Jonathan D.

Publication type:

Article

Visual Omics Explorer (VOE): a cross-platform portal for interactive data visualization.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2050, doi. 10.1093/bioinformatics/btw119

By:

Baekdoo Kim;
Ali, Thahmina;
Hosmer, Samuel;
Krampis, Konstantinos

Publication type:

Article

TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. 1911, doi. 10.1093/bioinformatics/btw035

By:

De Sano, Luca;
Caravagna, Giulio;
Ramazzotti, Daniele;
Graudenzi, Alex;
Mauri, Giancarlo;
Mishra, Bud;
Antoniotti, Marco

Publication type:

Article

PINCAGE: probabilistic integration of cance genomics data for perturbed gene identification and sample classification.

Published in:

Bioinformatics, 2016, v. 32, n. 9, p. 1353, doi. 10.1093/bioinformatics/btv758

By:

Switnicki, Michał P.;
Juul, Malene;
Madsen, Tobias;
Sørense, Karina D.;
Pedersen, Jakob S.

Publication type:

Article

MCAST: scanning for cis-regulatory motif clusters.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1217, doi. 10.1093/bioinformatics/btv750

By:

Grant, Charles E.;
Johnson, James;
Bailey, Timothy L.;
Noble, William Stafford

Publication type:

Article

LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 587, doi. 10.1093/bioinformatics/btv612

By:

Sheffield, Nathan C.;
Bock, Christoph

Publication type:

Article

regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 289, doi. 10.1093/bioinformatics/btv562

By:

Gel, Bernat;
Díez-Villanueva, Anna;
Serra, Eduard;
Buschbeck, Marcus;
Peinado, Miguel A.;
Malinverni, Roberto

Publication type:

Article

Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 2939, doi. 10.1093/bioinformatics/btv295

By:

Giancarlo, Raffaele;
Rombo, Simona E.;
Utro, Filippo

Publication type:

Article

GREGOR: evaluating global enrichment of trait-associated variants in epigenomic features using a systematic, data-driven approach.

Published in:

2015

By:

Schmidt, Ellen M.;
Ji Zhang;
Wei Zhou;
Jin Chen;
Mohlke, Karen L.;
Chen, Y. Eugene;
Willer, Cristen J.

Publication type:

Product Review

Learning chromatin states with factorized information criteria.

Published in:

Bioinformatics, 2015, v. 31, n. 15, p. 2426, doi. 10.1093/bioinformatics/btv163

By:

Michiaki Hamada;
Yukiteru Ono;
Ryohei Fujimaki;
Kiyoshi Asai

Publication type:

Article

Lacking alignments? The next-generation sequencing mapper segemehl revisited.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1837, doi. 10.1093/bioinformatics/btu146

By:

Otto, Christian;
Stadler, Peter F.;
Hoffmann, Steve

Publication type:

Article

ALEA: a toolbox for allele-specific epigenomics analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1172, doi. 10.1093/bioinformatics/btt744

By:

Younesy, Hamid;
Möller, Torsten;
Heravi-Moussavi, Alireza;
Cheng, Jeffrey B.;
Costello, Joseph F.;
Lorincz, Matthew C.;
Karimi, Mohammad M.;
Jones, Steven J. M.

Publication type:

Article