Works matching DE "RIBONUCLEOTIDES"

Results: 154

Evidence that processing of ribonucleotides in DNA by topoisomerase 1 is leading-strand specific.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 4, p. 291, doi. 10.1038/nsmb.2989

By:

Williams, Jessica S;
Clausen, Anders R;
Lujan, Scott A;
Marjavaara, Lisette;
Clark, Alan B;
Burgers, Peter M;
Chabes, Andrei;
Kunkel, Thomas A

Publication type:

Article

Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 3, p. 185, doi. 10.1038/nsmb.2957

By:

Clausen, Anders R;
Lujan, Scott A;
Burkholder, Adam B;
Orebaugh, Clinton D;
Williams, Jessica S;
Clausen, Maryam F;
Malc, Ewa P;
Mieczkowski, Piotr A;
Fargo, David C;
Smith, Duncan J;
Kunkel, Thomas A

Publication type:

Article

Ribonucleotides in DNA: hidden in plain sight.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 3, p. 176, doi. 10.1038/nsmb.2981

By:

Jinks-Robertson, Sue;
Klein, Hannah L

Publication type:

Article

The Chemical Likelihood of Ribonucleotide-α-Amino acid Copolymers as Players for Early Stages of Evolution.

Published in:

Journal of Molecular Evolution, 2019, v. 87, n. 2/3, p. 83, doi. 10.1007/s00239-019-9887-7

By:

Liu, Ziwei;
Ajram, Ghinwa;
Rossi, Jean-Christophe;
Pascal, Robert

Publication type:

Article

Alarmones as Vestiges of a Bygone RNA World.

Published in:

Journal of Molecular Evolution, 2019, v. 87, n. 1, p. 37, doi. 10.1007/s00239-018-9883-3

By:

Hernández-Morales, Ricardo;
Becerra, Arturo;
Lazcano, Antonio

Publication type:

Article

Primitive Dark-Phase Cycle of Photosynthesis at the Origin of Life.

Published in:

Journal of Molecular Evolution, 2018, v. 86, n. 3/4, p. 167, doi. 10.1007/s00239-018-9840-1

By:

Koenig, Michel

Publication type:

Article

Efficient Heritable Gene Expression Readily Evolves in RNA Pools.

Published in:

Journal of Molecular Evolution, 2017, v. 84, n. 5/6, p. 236, doi. 10.1007/s00239-017-9800-1

By:

Yarus, Michael

Publication type:

Article

Conversion of Biosynthetic Precursors of RNA to Those of DNA by Photoredox Chemistry.

Published in:

Journal of Molecular Evolution, 2014, v. 78, n. 5, p. 245, doi. 10.1007/s00239-014-9617-0

By:

Ritson, Dougal;
Sutherland, John

Publication type:

Article

Modulation of Strain-Specific Differences in Gene Expression by Cannabinoid Type 2 Receptor Deficiency.

Published in:

Calcified Tissue International, 2014, v. 94, n. 4, p. 423, doi. 10.1007/s00223-013-9823-6

By:

Sophocleous, Antonia;
Sims, Andrew;
Idris, Aymen;
Ralston, Stuart

Publication type:

Article

Avoidance of ribonucleotide-induced mutations by RNase H2 and Srs2-Exo1 mechanisms.

Published in:

Nature, 2014, v. 511, n. 7508, p. 251, doi. 10.1038/nature13292

By:

Potenski, Catherine J.;
Niu, Hengyao;
Sung, Patrick;
Klein, Hannah L.

Publication type:

Article

Multiple Non-Canonical Base-Stacking Interactions as One of the Major Determinants of RNA Tertiary Structure Organization.

Published in:

Biochemistry (00062979), 2023, v. 88, n. 6, p. 792, doi. 10.1134/S000629792306007X

By:

Metelev, Valeriy G.;
Baulin, Eugene F.;
Bogdanov, Alexey A.

Publication type:

Article

Genetic requirements for repair of lesions caused by single genomic ribonucleotides in S phase.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36866-6

By:

Schindler, Natalie;
Tonn, Matthias;
Kellner, Vanessa;
Fung, Jia Jun;
Lockhart, Arianna;
Vydzhak, Olga;
Juretschke, Thomas;
Möckel, Stefanie;
Beli, Petra;
Khmelinskii, Anton;
Luke, Brian

Publication type:

Article

Genome Instability Induced by Topoisomerase Misfunction.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 19, p. 10247, doi. 10.3390/ijms251910247

By:

Nitiss, Karin C.;
Bandak, Afif;
Berger, James M.;
Nitiss, John L.

Publication type:

Article

Upregulated Expression of Activation-Induced Cytidine Deaminase in Ocular Adnexal Marginal Zone Lymphoma with IgG4-Positive Cells.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 8, p. 4083, doi. 10.3390/ijms22084083

By:

Nishikori, Asami;
Nishimura, Yoshito;
Shibata, Rei;
Ohshima, Koh-ichi;
Gion, Yuka;
Ikeda, Tomoka;
Nishimura, Midori Filiz;
Yoshino, Tadashi;
Sato, Yasuharu

Publication type:

Article

One, No One, and One Hundred Thousand: The Many Forms of Ribonucleotides in DNA.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 5, p. 1706, doi. 10.3390/ijms21051706

By:

Nava, Giulia Maria;
Grasso, Lavinia;
Sertic, Sarah;
Pellicioli, Achille;
Muzi Falconi, Marco;
Lazzaro, Federico

Publication type:

Article

Perturbations in the Replication Program Contribute to Genomic Instability in Cancer.

Published in:

International Journal of Molecular Sciences, 2017, v. 18, n. 6, p. 1138, doi. 10.3390/ijms18061138

By:

Blumenfeld, Britny;
Ben-Zimra, Micha;
Simon, Itamar

Publication type:

Article

MicroRNA (miRNA) Signaling in the Human CNS in Sporadic Alzheimer's Disease (AD)-Novel and Unique Pathological Features.

Published in:

International Journal of Molecular Sciences, 2015, v. 16, n. 12, p. 30105, doi. 10.3390/ijms161226223

By:

Yuhai Zhao;
Aileen I., Pogue;
Lukiw, Walter J.

Publication type:

Article

In search of the mRNA modification landscape in plants.

Published in:

BMC Plant Biology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12870-019-2033-2

By:

Chmielowska-Bąk, Jagna;
Arasimowicz-Jelonek, Magdalena;
Deckert, Joanna

Publication type:

Article

CRISPR-Cas13a-Triggered DNAzyme Signal Amplification-Based Colorimetric miRNA Detection Method and Its Application in Evaluating the Anxiety.

Published in:

Applied Biochemistry & Biotechnology, 2024, v. 196, n. 11, p. 7896, doi. 10.1007/s12010-024-04951-1

By:

Yan, Na;
Hu, Zhiwei;
Zhang, Lingling

Publication type:

Article

Biotechnological Utilization of Biodiesel-Derived Glycerol for the Production of Ribonucleotides and Microbial Biomass.

Published in:

Applied Biochemistry & Biotechnology, 2012, v. 167, n. 7, p. 2054, doi. 10.1007/s12010-012-9749-x

By:

Rivaldi, Juan;
Sarrouh, Boutros;
Branco, Ricardo;
Mancilha, Ismael;
Silva, Silvio

Publication type:

Article

Chemical Synthesis of Mono- and Bis-Labeled Pre-MicroRNAs.

Published in:

Angewandte Chemie, 2013, v. 125, n. 46, p. 12250, doi. 10.1002/ange.201304986

By:

Pradère, Ugo;
Brunschweiger, Andreas;
Gebert, Luca F. R.;
Lucic, Matije;
Roos, Martina;
Hall, Jonathan

Publication type:

Article

The Zea mays glycine-rich RNA-binding protein MA16 is bound to a ribonucleotide(s) by a stable linkage.

Published in:

Journal of Plant Research, 2012, v. 125, n. 5, p. 653, doi. 10.1007/s10265-012-0476-8

By:

Freire, Miguel

Publication type:

Article

Internal initiation of polyuridylic acid translation in bacterial cell-free system.

Published in:

Biochemistry (00062979), 2013, v. 78, n. 12, p. 1354, doi. 10.1134/S0006297913120055

By:

Sogorin, E.;
Agalarov, S.;
Spirin, A.

Publication type:

Article

PREPARATION AND CHARACTERIZATION OF A NEW GENERATION OF CHITOSAN HYDROGELS CONTAINING PYRIMIDINE RIBONUCLEOTIDES.

Published in:

Progress on Chemistry & Application of Chitin & its Derivatives, 2020, v. 25, p. 192, doi. 10.15259/PCACD.25.015

By:

Pieklarz, Katarzyna;
Tylman, Michał;
Modrzejewska, Zofia

Publication type:

Article

Effects of Dietary Energy Density in a Fermented Total Mixed Ration Formulated with Different Ratios of Rice Straw and Cassava Pulp on 2- or 14-Day-Aged Meat Quality, Collagen, Fatty Acids, and Ribonucleotides of Native Thai Cattle Longissimus Muscle.

Published in:

Foods, 2022, v. 11, n. 14, p. 2046, doi. 10.3390/foods11142046

By:

Chaosap, Chanporn;
Lukkananukool, Achara;
Polyorach, Sineenart;
Sommart, Kritapon;
Sivapirunthep, Panneepa;
Limsupavanich, Rutcharin

Publication type:

Article

Processing of a single ribonucleotide embedded into DNA by human nucleotide excision repair and DNA polymerase η.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-50421-8

By:

Sassa, Akira;
Tada, Haruto;
Takeishi, Ayuna;
Harada, Kaho;
Suzuki, Megumi;
Tsuda, Masataka;
Sasanuma, Hiroyuki;
Takeda, Shunichi;
Sugasawa, Kaoru;
Yasui, Manabu;
Honma, Masamitsu;
Ura, Kiyoe

Publication type:

Article

Scientific Opinion on the safety and efficacy of disodium 5'-ribonucleotides, disodium 5'-guanylate, disodium 5'-inosinate for all animal species and categories.

Published in:: EFSA Journal, 2014, v. 12, n. 3, p. 1, doi. 10.2903/j.efsa.2014.3606
Publication type:: Article

Physiologically based pharmacokinetic model for 6-mercpatopurine: exploring the role of genetic polymorphism in TPMT enzyme activity.

Published in:

British Journal of Clinical Pharmacology, 2015, v. 80, n. 1, p. 86, doi. 10.1111/bcp.12588

By:

Ogungbenro, Kayode;
Aarons, Leon

Publication type:

Article

Co-evolution of specific amino acid in sigma 1.2 region and nucleotide base in the discriminator to act as sensors of small molecule effectors of transcription initiation in mycobacteria.

Published in:

Molecular Microbiology, 2013, v. 90, n. 3, p. 569, doi. 10.1111/mmi.12384

By:

Tare, Priyanka;
Mallick, Bratati;
Nagaraja, Valakunja

Publication type:

Article

Gene editing with CRISPR-Cas12a guides possessing ribose-modified pseudoknot handles.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26989-z

By:

Ageely, Eman A.;
Chilamkurthy, Ramadevi;
Jana, Sunit;
Abdullahu, Leonora;
O'Reilly, Daniel;
Jensik, Philip J.;
Damha, Masad J.;
Gagnon, Keith T.

Publication type:

Article

Structural basis for proficient oxidized ribonucleotide insertion in double strand break repair.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24486-x

By:

Jamsen, Joonas A.;
Sassa, Akira;
Perera, Lalith;
Shock, David D.;
Beard, William A.;
Wilson, Samuel H.

Publication type:

Article

The Importance ofMitochondrial DNA in Aging and Cancer.

Published in:

Journal of Aging Research, 2011, p. 1, doi. 10.4061/2011/407536

By:

Desler, Claus;
Lise Marcker, Maiken;
Singh, Keshav K.;
Juel Rasmussen1, Lene

Publication type:

Article

Structures and reaction mechanisms of the two related enzymes, PurN and PurU.

Published in:

Journal of Biochemistry, 2013, v. 154, n. 6, p. 569, doi. 10.1093/jb/mvt090

By:

Sampei, Gen-ichi;
Kanagawa, Mayumi;
Baba, Seiki;
Shimasaki, Toshiaki;
Taka, Hiroyuki;
Mitsui, Shohei;
Fujiwara, Shinji;
Yanagida, Yuki;
Kusano, Mayumi;
Suzuki, Sakiko;
Terao, Kayoko;
Kawai, Hiroya;
Fukai, Yoko;
Nakagawa, Noriko;
Ebihara, Akio;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Kawai, Gota

Publication type:

Article

The Importance of the Presence of a 5'-Ribonucleotide and the Contribution of the T1R1 + T1R3 Heterodimer and an Additional Low-Affinity Receptor in the Taste Detection of L-Glutamate as Assessed Psychophysically.

Published in:

Journal of Neuroscience, 2014, v. 34, n. 39, p. 13234, doi. 10.1523/JNEUROSCI.0417-14.2014

By:

Smith, Kimberly R.;
Spector, Alan C.

Publication type:

Article

Concurrent analysis of human equilibrative nucleoside transporter 1 and ribonucleotide reductase subunit 1 expression increases predictive value for prognosis in cholangiocarcinoma patients treated with adjuvant gemcitabine-based chemotherapy.

Published in:

British Journal of Cancer, 2014, v. 111, n. 7, p. 1275, doi. 10.1038/bjc.2014.399

By:

Sasaki, H;
Murakami, Y;
Uemura, K;
Sudo, T;
Hashimoto, Y;
Kondo, N;
Sueda, T

Publication type:

Article

Origin of Coding RNA from Random-Sequence RNA.

Published in:

DNA & Cell Biology, 2019, v. 38, n. 3, p. 223, doi. 10.1089/dna.2018.4389

By:

Banfalvi, Gaspar

Publication type:

Article

MicroRNAs in model and complex organisms.

Published in:

2017

By:

Budak, Hikmet;
Zhang, Baohong

Publication type:

Editorial

Recent findings in the regulation of G6PD and its role in diseases.

Published in:

Frontiers in Pharmacology, 2022, v. 13, p. 01, doi. 10.3389/fphar.2022.932154

By:

Qingfei Meng;
Yanghe Zhang;
Shiming Hao;
Huihui Sun;
Bin Liu;
Honglan Zhou;
Yishu Wang;
Zhi-Xiang Xu

Publication type:

Article

New insights into the plant epitranscriptome.

Published in:

Journal of Experimental Botany, 2018, v. 69, n. 20, p. 4659, doi. 10.1093/jxb/ery262

By:

Vandivier, Lee E;
Gregory, Brian D

Publication type:

Article

Stable isotope resolved metabolomics analysis of ribonucleotide and RNA metabolism in human lung cancer cells.

Published in:

Metabolomics, 2012, v. 8, n. 3, p. 517, doi. 10.1007/s11306-011-0337-9

By:

Fan, Teresa;
Tan, Jinlian;
McKinney, Martin;
Lane, Andrew

Publication type:

Article

Podocytes maintain high basal levels of autophagy independent of mtor signaling.

Published in:

Autophagy, 2020, v. 16, n. 11, p. 1932, doi. 10.1080/15548627.2019.1705007

By:

Bork, Tillmann;
Liang, Wei;
Yamahara, Kosuke;
Lee, Philipp;
Tian, Zhejia;
Liu, Shuya;
Schell, Christoph;
Thedieck, Kathrin;
Hartleben, Bjoern;
Patel, Ketan;
Tharaux, Pierre-Louis;
Lenoir, Olivia;
Huber, Tobias B.

Publication type:

Article

Vasohibin 2 reduces chemosensitivity to gemcitabine in pancreatic cancer cells via Jun proto-oncogene dependent transactivation of ribonucleotide reductase regulatory subunit M2.

Published in:

Molecular Cancer, 2017, v. 16, p. 1, doi. 10.1186/s12943-017-0619-6

By:

Min Tu;
Haifeng Li;
Nan Lv;
Chunhua Xi;
Zipeng Lu;
Jishu Wei;
Jianmin Chen;
Feng Guo;
Kuirong Jiang;
Guoxin Song;
Wentao Gao;
Yi Miao

Publication type:

Article

Hepatitis C Virus Core Protein Promotes miR-122 Destabilization by Inhibiting GLD-2.

Published in:

PLoS Pathogens, 2016, v. 12, n. 7, p. 1, doi. 10.1371/journal.ppat.1005714

By:

Kim, Geon-Woo;
Lee, Seung-Hoon;
Cho, Hee;
Kim, Minwoo;
Shin, Eui-Cheol;
Oh, Jong-Won

Publication type:

Article

Gene-based SNP identification and validation in soybean using next-generation transcriptome sequencing.

Published in:

Molecular Genetics & Genomics, 2018, v. 293, n. 3, p. 623, doi. 10.1007/s00438-017-1410-5

By:

Guo, Yong;
Su, Bohong;
Tang, Junyong;
Zhou, Fulai;
Qiu, Li-Juan

Publication type:

Article

Imidazoleacetic acid-ribotide in vestibulo-sympathetic pathway neurons.

Published in:

Experimental Brain Research, 2016, v. 234, n. 10, p. 2747, doi. 10.1007/s00221-016-4725-2

By:

Holstein, Gay;
Friedrich, Victor;
Martinelli, Giorgio

Publication type:

Article

The promise and challenges of exploiting the proton-coupled folate transporter for selective therapeutic targeting of cancer.

Published in:

2018

By:

Matherly, Larry H.;
Hou, Zhanjun;
Gangjee, Aleem

Publication type:

journal article

AICAR Sustains J1 Mouse Embryonic Stem Cell Self-Renewal and Pluripotency by Regulating Transcription Factor and Epigenetic Modulator Expression.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2013, v. 32, n. 2, p. 459, doi. 10.1159/000354451

By:

Shi, Xiaoyan;
Wu, Yongyan;
ai, Zhiying;
Liu, Xin;
Yang, Liping;
Du, Juan;
Shao, Jingjing;
Guo, Zekun;
Zhang, Yong

Publication type:

Article

Detection of ribonucleotides embedded in DNA by Nanopore sequencing.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06077-w

By:

Grasso, Lavinia;
Fonzino, Adriano;
Manzari, Caterina;
Leonardi, Tommaso;
Picardi, Ernesto;
Gissi, Carmela;
Lazzaro, Federico;
Pesole, Graziano;
Muzi-Falconi, Marco

Publication type:

Article

An efficient and practical synthesis of formylglycinamide ribonucleotide (FGAR).

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2018, v. 37, n. 2, p. 79, doi. 10.1080/15257770.2017.1414242

By:

Zheng, Xiu-An;
Wang, Rui;
Gong, Shan-Shan;
Kong, Rui;
Liu, Rong;
Sun, Qi

Publication type:

Article

The Evaluation of Some Biomarkers According to Rheumatoid Factor in Early Diagnosis of Rheumatoid Arthritis Patients in Baghdad City.

Published in:

Iraqi Journal of Science, 2020, v. 61, n. 9, p. 2196, doi. 10.24996/ijs.2020.61.9.6

By:

Hassoon, Hind Jaber;
Jasim, Walaa Esmail;
Hassan Abbas, Ahmed Abdul

Publication type:

Article