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Emerging Technologies for Genome-Wide Profiling of DNA Breakage.
- Published in:
- Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.610386
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- Publication type:
- Article
Complex genomic patterns of abasic sites in mammalian DNA revealed by a high-resolution SSiNGLe-AP method.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33594-1
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- Publication type:
- Article
Dynamic Patterns of Mammalian Mitochondrial DNA Replication Uncovered Using SSiNGLe-5′ES.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 11, p. 9711, doi. 10.3390/ijms24119711
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- Publication type:
- Article
Evidence for Existence of Multiple Functional Human Small RNAs Derived from Transcripts of Protein-Coding Genes.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 4, p. 4163, doi. 10.3390/ijms24044163
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- Publication type:
- Article
Functional annotation of the vlinc class of non-coding RNAs using systems biology approach.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 7, p. 3233, doi. 10.1093/nar/gkw162
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- Publication type:
- Article
A concept of eliminating nonhomologous recombination for scalable and safe AAV vector generation for human gene therapy.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 13, p. 6609, doi. 10.1093/nar/gkt404
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- Publication type:
- Article
Biological function of unannotated transcription during the early development of Drosophila melanogaster.
- Published in:
- Nature Genetics, 2006, v. 38, n. 10, p. 1151, doi. 10.1038/ng1875
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- Publication type:
- Article
Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.
- Published in:
- Nature Methods, 2010, v. 7, n. 7, p. 528, doi. 10.1038/nmeth.1470
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- Publication type:
- Article
Efficient targeted transcript discovery via array-based normalization of RACE libraries.
- Published in:
- Nature Methods, 2008, v. 5, n. 7, p. 629, doi. 10.1038/nmeth.1216
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- Publication type:
- Article
Very long intergenic non-coding (vlinc) RNAs directly regulate multiple genes in cis and trans.
- Published in:
- BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-021-01044-x
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- Publication type:
- Article
Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila.
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- Nature Structural & Molecular Biology, 2013, v. 20, n. 11, p. 1333, doi. 10.1038/nsmb.2675
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- Publication type:
- Article
5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary.
- Published in:
- Nature Structural & Molecular Biology, 2012, v. 19, n. 10, p. 1037, doi. 10.1038/nsmb.2372
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- Publication type:
- Article
Proteomics Analysis of Co-Purifying Cellular Proteins Associated with rAAV Vectors.
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- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0086453
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- Publication type:
- Article
Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells.
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- PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0028213
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- Publication type:
- Article
Protocol Dependence of Sequencing-Based Gene Expression Measurements.
- Published in:
- PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0019287
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- Publication type:
- Article
Genome-Wide Mapping Indicates That p73 and p63 Co-Occupy Target Sites and Have Similar DNA-Binding Profiles In Vivo.
- Published in:
- PLoS ONE, 2010, v. 5, n. 7, p. 1, doi. 10.1371/journal.pone.0011572
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- Publication type:
- Article
Genome-wide transcription and the implications for genomic organization.
- Published in:
- Nature Reviews Genetics, 2007, v. 8, n. 6, p. 413, doi. 10.1038/nrg2083
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- Publication type:
- Article
Identification of novel GLI1 target genes and regulatory circuits in human cancer cells.
- Published in:
- Molecular Oncology, 2018, v. 12, n. 10, p. 1718, doi. 10.1002/1878-0261.12366
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- Publication type:
- Article
Differential analysis for high density tiling microarray data.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 359, doi. 10.1186/1471-2105-8-359
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- Publication type:
- Article
Diversification of Retinoblastoma Protein Function Associated with Cis and Trans Adaptations.
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- Molecular Biology & Evolution, 2019, v. 36, n. 12, p. 2790, doi. 10.1093/molbev/msz187
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- Publication type:
- Article
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.
- Published in:
- Nature, 2011, v. 473, n. 7347, p. 394, doi. 10.1038/nature10102
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- Publication type:
- Article
New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism.
- Published in:
- Nature, 2010, v. 466, n. 7306, p. 642, doi. 10.1038/nature09190
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- Publication type:
- Article
Transcriptomics for Clinical and Experimental Biology Research: Hang on a Seq.
- Published in:
- Advanced Genetics, 2023, v. 4, n. 2, p. 1, doi. 10.1002/ggn2.202200024
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- Publication type:
- Article
A CRISPR/Cas13-based approach demonstrates biological relevance of vlinc class of long non-coding RNAs in anticancer drug response.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-58104-5
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- Publication type:
- Article
Microarray-based DNA methylation profiling: technology and applications.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 2, p. 528, doi. 10.1093/nar/gkj461
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- Publication type:
- Article
Common occurrence of hotspots of single strand DNA breaks at transcriptional start sites.
- Published in:
- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10284-4
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- Publication type:
- Article
Beyond expression profiling: Next generation uses of high density oligonucleotide arrays.
- Published in:
- Briefings in Functional Genomics & Proteomics, 2003, v. 2, n. 1, p. 47, doi. 10.1093/bfgp/2.1.47
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- Publication type:
- Article
FLI1 Induces Megakaryopoiesis Gene Expression Through WAS/WIP-Dependent and Independent Mechanisms; Implications for Wiskott-Aldrich Syndrome.
- Published in:
- Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.607836
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- Publication type:
- Article
Erratum: A vlincRNA participates in senescence maintenance by relieving H2AZ-mediated repression at the INK4 locus.
- Published in:
- Nature Communications, 2015, v. 6, n. 4, p. 6918, doi. 10.1038/ncomms7918
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- Publication type:
- Article
A vlincRNA participates in senescence maintenance by relieving H2AZ-mediated repression at the INK4 locus.
- Published in:
- Nature Communications, 2015, v. 6, n. 1, p. 5971, doi. 10.1038/ncomms6971
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- Publication type:
- Article
RNA editing regulates transposon-mediated heterochromatic gene silencing.
- Published in:
- Nature Communications, 2013, v. 4, n. 11, p. 2745, doi. 10.1038/ncomms3745
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- Publication type:
- Article
VlincRNAs controlled by retroviral elements are a hallmark of pluripotency and cancer.
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- Genome Biology, 2013, v. 14, n. 7, p. R73, doi. 10.1186/gb-2013-14-7-r73
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- Publication type:
- Article
The majority of total nuclear-encoded non-ribosomal RNA in a human cell is `dark matter" un-annotated RNA.
- Published in:
- BMC Biology, 2010, v. 8, p. 149, doi. 10.1186/1741-7007-8-149
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- Publication type:
- Article
FLI1 promotes protein translation via the transcriptional regulation of MKNK1 expression.
- Published in:
- International Journal of Oncology, 2020, v. 56, n. 2, p. 430, doi. 10.3892/ijo.2019.4943
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- Publication type:
- Article
Methods to Analyze the Non-Coding RNA Interactome—Recent Advances and Challenges.
- Published in:
- Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.857759
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- Publication type:
- Article
Complex Age- and Cancer-Related Changes in Human Blood Transcriptome—Implications for Pan-Cancer Diagnostics.
- Published in:
- Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.746879
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- Publication type:
- Article
Evidence for widespread existence of functional novel and non-canonical human transcripts.
- Published in:
- BMC Biology, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12915-023-01753-5
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- Publication type:
- Article
Lessons from discovery of true ADAR RNA editing sites in a human cell line.
- Published in:
- BMC Biology, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12915-023-01651-w
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- Publication type:
- Article
Variation in novel exons (RACEfrags) of the MECP2 gene in Rett syndrome patients and controls.
- Published in:
- Human Mutation, 2009, v. 30, n. 9, p. E866, doi. 10.1002/humu.21073
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- Publication type:
- Article
Reverse-genetics studies of lncRNAs—what we have learnt and paths forward.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-01994-5
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- Publication type:
- Article
Genome-Wide Profiling of Endogenous Single-Stranded DNA Using the SSiNGLe-P1 Method.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 15, p. 12062, doi. 10.3390/ijms241512062
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- Publication type:
- Article
Dark matter RNA illuminates the puzzle of genome-wide association studies.
- Published in:
- BMC Medicine, 2014, v. 12, n. 1, p. 1, doi. 10.1186/1741-7015-12-97
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- Publication type:
- Article
Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells.
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- 2012
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- Publication type:
- Back Cover
Genome‐wide profiles of DNA damage represent highly accurate predictors of mammalian age.
- Published in:
- Aging Cell, 2024, v. 23, n. 5, p. 1, doi. 10.1111/acel.14122
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- Publication type:
- Article
Novel approach reveals genomic landscapes of single-strand DNA breaks with nucleotide resolution in human cells.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-13602-7
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- Publication type:
- Article
Identification of novel non-coding RNA-based negative feedback regulating the expression of the oncogenic transcription factor GLI1.
- Published in:
- Molecular Oncology, 2014, v. 8, n. 5, p. 912, doi. 10.1016/j.molonc.2014.03.009
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- Publication type:
- Article