Works matching DE "CIS-regulatory elements (Genetics)"

Results: 554

Effects of Water Stress on Cotton (Gossypium spp.) Plants and Productivity.

Published in:

Egyptian Journal of Agronomy, 2021, v. 43, n. 3, p. 307, doi. 10.21608/agro.2021.89343.1272

By:

Rehman, Mashal;
Bakhsh, Ali;
Zubair, Muhammad;
Rehmani, Muhammad Ishaq Asif;
Shahzad, Aqeel;
Nayab, Syeda Fiza;
Khan, Madiha Mobeen;
Anum, Wajiha;
Akhta, Rubina;
Kanwal, Natasha;
Manzoor, Nadia;
Ali, Imtiaz

Publication type:

Article

A Recombinant Multivalent Vaccine (rCpa1) Induces Protection for C57BL/6 and HLA Transgenic Mice against Pulmonary Infection with Both Species of Coccidioides.

Published in:

Vaccines, 2024, v. 12, n. 1, p. 67, doi. 10.3390/vaccines12010067

By:

Campuzano, Althea;
Pentakota, Komali Devi;
Liao, Yu-Rou;
Zhang, Hao;
Wiederhold, Nathan P.;
Ostroff, Gary R.;
Hung, Chiung-Yu

Publication type:

Article

Genome‐wide identification and expression analysis of detoxification efflux carriers (DTX) genes family under abiotic stresses in flax.

Published in:

Physiologia Plantarum, 2021, v. 171, n. 4, p. 483, doi. 10.1111/ppl.13105

By:

Ali, Essa;
Saand, Mumtaz Ali;
Khan, Ali Raza;
Shah, Jawad Munawar;
Feng, Simin;
Ming, Cai;
Sun, Peilong

Publication type:

Article

Genome-Wide Acetylation Modification of H3K27ac in Bovine Rumen Cell Following Butyrate Exposure.

Published in:

Biomolecules (2218-273X), 2023, v. 13, n. 7, p. 1137, doi. 10.3390/biom13071137

By:

Kang, Xiaolong;
Li, Chenglong;
Liu, Shuli;
Baldwin VI, Ransom L.;
Liu, George E.;
Li, Cong-Jun

Publication type:

Article

Genetic risk variants for multiple sclerosis are linked to differences in alternative pre-mRNA splicing.

Published in:

Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.931831

By:

Putscher, Elena;
Hecker, Michael;
Fitzner, Brit;
Boxberger, Nina;
Schwartz, Margit;
Koczan, Dirk;
Lorenz, Peter;
Zettl, Uwe Klaus

Publication type:

Article

Contribution of Immunoglobulin Enhancers to B Cell Nuclear Organization.

Published in:

Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.877930

By:

Bruzeau, Charlotte;
Cook-Moreau, Jeanne;
Pinaud, Eric;
Le Noir, Sandrine

Publication type:

Article

Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing.

Published in:

Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00199

By:

Lee, Christopher;
Wang, Kai;
Qin, Tingting;
Sartor, Maureen A.

Publication type:

Article

4See: A Flexible Browser to Explore 4C Data.

Published in:

Frontiers in Genetics, 2020, v. 10, p. 1, doi. 10.3389/fgene.2019.01372

By:

Ben Zouari, Yousra;
Platania, Angeliki;
Molitor, Anne M.;
Sexton, Tom

Publication type:

Article

eQTLMAPT: Fast and Accurate eQTL Mediation Analysis With Efficient Permutation Testing Approaches.

Published in:

Frontiers in Genetics, 2020, v. 10, p. 1, doi. 10.3389/fgene.2019.01309

By:

Wang, Tao;
Peng, Qidi;
Liu, Bo;
Liu, Xiaoli;
Liu, Yongzhuang;
Peng, Jiajie;
Wang, Yadong

Publication type:

Article

Unraveling the Regulatory G-Quadruplex Puzzle: Lessons From Genome and Transcriptome-Wide Studies.

Published in:

Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.01002

By:

Ravichandran, Subramaniyam;
Ahn, Jin-Hyun;
Kim, Kyeong Kyu

Publication type:

Article

Elimination of Reference Mapping Bias Reveals Robust Immune Related Allele-Specific Expression in Crossbred Sheep.

Published in:

Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00863

By:

Salavati, Mazdak;
Bush, Stephen J.;
Palma-Vera, Sergio;
McCulloch, Mary E. B.;
Hume, David A.;
Clark, Emily L.

Publication type:

Article

The Length of the Expressed 3′ UTR Is an Intermediate Molecular Phenotype Linking Genetic Variants to Complex Diseases.

Published in:

Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00714

By:

Mariella, Elisa;
Marotta, Federico;
Grassi, Elena;
Gilotto, Stefano;
Provero, Paolo

Publication type:

Article

An improved method for rapid analysis of promoters using modified sonication-assisted transient assay.

Published in:

3 Biotech, 2018, v. 8, n. 4, p. 1, doi. 10.1007/s13205-018-1219-x

By:

Chauhan, Chetan;
Joshi, Gauri;
Chaudhary, Darshna;
Das, Sandip

Publication type:

Article

Regulome‐wide association study identifies genetically driven accessible regions associated with pancreatic cancer risk.

Published in:

International Journal of Cancer, 2024, v. 154, n. 4, p. 670, doi. 10.1002/ijc.34761

By:

Liu, Shuai;
Zhong, Hua;
Zhu, Jingjing;
Wu, Yong;
Deng, Youping;
Wu, Lang

Publication type:

Article

Remote modulation of WWOX by an intronic variant associated with survival of Chinese gastric cancer patients.

Published in:

International Journal of Cancer, 2024, v. 154, n. 2, p. 307, doi. 10.1002/ijc.34703

By:

Cheng, Lei;
Chang, Yuanyuan;
Xia, Zuguang;
Liu, Yizhen;
Liu, Xiao;
Xiong, Liwen;
Liu, Chenchen;
Zhu, Xiaodong;
Wang, Mengyun;
Qiu, Lixin

Publication type:

Article

Novel functional variants in the Notch pathway and survival of Chinese colorectal cancer.

Published in:

International Journal of Cancer, 2021, v. 149, n. 1, p. 84, doi. 10.1002/ijc.33561

By:

Qu, Xiaofei;
Zhao, Liqin;
Wang, Mengyun;
Zhang, Ruoxin;
Cheng, Lei;
Qiu, Lixin;
Tong, Xiaoxia;
Cai, Sanjun;
Wei, Qingyi;
Li, Qingguo

Publication type:

Article

Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36364-9

By:

Choudhary, Mayank N. K.;
Quaid, Kara;
Xing, Xiaoyun;
Schmidt, Heather;
Wang, Ting

Publication type:

Article

A genome-wide relay of signalling-responsive enhancers drives hematopoietic specification.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-35910-9

By:

Edginton-White, B.;
Maytum, A.;
Kellaway, S. G.;
Goode, D. K.;
Keane, P.;
Pagnuco, I.;
Assi, S. A.;
Ames, L.;
Clarke, M.;
Cockerill, P. N.;
Göttgens, B.;
Cazier, J. B.;
Bonifer, C.

Publication type:

Article

Robust Genetic Analysis of the X-Linked Anophthalmic (Ie) Mouse.

Published in:

Genes, 2022, v. 13, n. 10, p. N.PAG, doi. 10.3390/genes13101797

By:

Hernandez-Moran, Brianda A.;
Papanastasiou, Andrew S.;
Parry, David;
Meynert, Alison;
Gautier, Philippe;
Grimes, Graeme;
Adams, Ian R.;
Trejo-Reveles, Violeta;
Bengani, Hemant;
Keighren, Margaret;
Jackson, Ian J.;
Adams, David J.;
FitzPatrick, David R.;
Rainger, Joe

Publication type:

Article

Genome-Wide cis -Regulatory Element Based Discovery of Auxin-Responsive Genes in Higher Plant.

Published in:

Genes, 2022, v. 13, n. 1, p. 24, doi. 10.3390/genes13010024

By:

Wu, Jianfei;
Gao, Fan;
Li, Tongtong;
Guo, Haixia;
Zhang, Li;
Fan, Yijie;
Chen, Aiyun;
Wang, Jianjun;
Shi, Fengjuan;
Shan, Guangyao;
Guo, Huihui;
Zeng, Fanchang

Publication type:

Article

Differential Expression of Long Non-Coding RNA (lncRNA) in Mediterranean Mussel (Mytilus galloprovincialis) Hemocytes under Immune Stimuli.

Published in:

Genes, 2021, v. 12, n. 9, p. 1393, doi. 10.3390/genes12091393

By:

Pereiro, Patricia;
Moreira, Rebeca;
Novoa, Beatriz;
Figueras, Antonio

Publication type:

Article

A Genome-Wide Analysis of Pathogenesis-Related Protein-1 (PR-1) Genes from Piper nigrum Reveals Its Critical Role during Phytophthora capsici Infection.

Published in:

Genes, 2021, v. 12, n. 7, p. 1007, doi. 10.3390/genes12071007

By:

Kattupalli, Divya;
Srinivasan, Asha;
Soniya, Eppurath Vasudevan

Publication type:

Article

Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode Meloidogyne incognita and a Promoter Motif Associated with Effector Genes.

Published in:

Genes, 2021, v. 12, n. 5, p. 771, doi. 10.3390/genes12050771

By:

Da Rocha, Martine;
Bournaud, Caroline;
Dazenière, Julie;
Thorpe, Peter;
Bailly-Bechet, Marc;
Pellegrin, Clément;
Péré, Arthur;
Grynberg, Priscila;
Perfus-Barbeoch, Laetitia;
Eves-van den Akker, Sebastian;
Danchin, Etienne G. J.;
Takken, Frank L.W.

Publication type:

Article

Set-Based Rare Variant Expression Quantitative Trait Loci in Blood and Brain from Alzheimer Disease Study Participants.

Published in:

Genes, 2021, v. 12, n. 3, p. 419, doi. 10.3390/genes12030419

By:

Patel, Devanshi;
Zhang, Xiaoling;
Farrell, John J.;
Lunetta, Kathryn L.;
Farrer, Lindsay A.;
Ibanez, Laura

Publication type:

Article

Insights into the Transcriptional Regulation of Branching Hormonal Signaling Pathways Genes under Drought Stress in Arabidopsis.

Published in:

Genes, 2021, v. 12, n. 2, p. 298, doi. 10.3390/genes12020298

By:

Rolly, Nkulu Kabange;
Mun, Bong-Gyu;
Yun, Byung-Wook

Publication type:

Article

Evolution of Homeologous Gene Expression in Polyploid Wheat.

Published in:

Genes, 2020, v. 11, n. 12, p. 1401, doi. 10.3390/genes11121401

By:

Zhao, Na;
Dong, Qianli;
Nadon, Brian D.;
Ding, Xiaoyang;
Wang, Xutong;
Dong, Yuzhu;
Liu, Bao;
Jackson, Scott A.;
Xu, Chunming

Publication type:

Article

Computational Methods for the Analysis of Genomic Data and Biological Processes.

Published in:

2020

By:

Gómez-Vela, Francisco;
Divina, Federico;
García-Torres, Miguel

Publication type:

Editorial

Chromatin Interaction Changes during the iPSC-NPC Model to Facilitate the Study of Biologically Significant Genes Involved in Differentiation.

Published in:

Genes, 2020, v. 11, n. 10, p. 1176, doi. 10.3390/genes11101176

By:

Choi, Won-Young;
Hwang, Ji-Hyun;
Lee, Jin-Young;
Cho, Ann-Na;
Lee, Andrew J;
Jung, Inkyung;
Cho, Seung-Woo;
Kim, Lark Kyun;
Kim, Young-Joon

Publication type:

Article

Genome-Wide Analysis of OPR Family Genes in Cotton Identified a Role for GhOPR9 in Verticillium dahliae Resistance.

Published in:

Genes, 2020, v. 11, n. 10, p. 1134, doi. 10.3390/genes11101134

By:

Liu, Shichao;
Sun, Ruibin;
Zhang, Xiaojian;
Feng, Zili;
Wei, Feng;
Zhao, Lihong;
Zhang, Yalin;
Zhu, Longfu;
Feng, Hongjie;
Zhu, Heqin

Publication type:

Article

Biodegradation of Tetralin: Genomics, Gene Function and Regulation.

Published in:

Genes, 2019, v. 10, n. 5, p. 339, doi. 10.3390/genes10050339

By:

Floriano, Belén;
Santero, Eduardo;
Reyes-Ramírez, Francisca

Publication type:

Article

Population Genetic and Functional Analysis of a cis-Regulatory Polymorphism in the DrosophilamelanogasterMetallothionein A gene.

Published in:

Genes, 2019, v. 10, n. 2, p. 147, doi. 10.3390/genes10020147

By:

Ramnarine, Timothy J. S.;
Glaser-Schmitt, Amanda;
Catalán, Ana;
Parsch, John

Publication type:

Article

RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis.

Published in:

Genes, 2018, v. 9, n. 6, p. 278, doi. 10.3390/genes9060278

By:

Chen, Xin;
Ma, Anjun;
McDermaid, Adam;
Ma, Qin;
Zhang, Hanyuan;
Liu, Chao;
Cao, Huansheng

Publication type:

Article

The DNAJ gene family in yerba mate (Ilex paraguariensis): genome-wide identification, structural characterization, orthology based classification and expression analysis.

Published in:

Rodriguésia, 2023, v. 74, p. 1, doi. 10.1590/2175-7860202374020

By:

Mabel Aguilera, Patricia;
Julio Debat, Humberto;
Lorena Castrillo, María;
Angel Bich, Gustavo;
Grabiele, Mauro

Publication type:

Article

Identifying causal models between genetically regulated methylation patterns and gene expression in healthy colon tissue.

Published in:

Clinical Epigenetics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13148-021-01148-9

By:

Díez-Villanueva, Anna;
Jordà, Mireia;
Carreras-Torres, Robert;
Alonso, Henar;
Cordero, David;
Guinó, Elisabet;
Sanjuan, Xavier;
Santos, Cristina;
Salazar, Ramón;
Sanz-Pamplona, Rebeca;
Moreno, Victor

Publication type:

Article

Chromatin accessibility changes at intergenic regions are associated with ovarian cancer drug resistance.

Published in:

Clinical Epigenetics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13148-021-01105-6

By:

Gallon, John;
Loomis, Erick;
Curry, Edward;
Martin, Nicholas;
Brody, Leigh;
Garner, Ian;
Brown, Robert;
Flanagan, James M.

Publication type:

Article

Leveraging epigenetics to enhance the efficacy of immunotherapy.

Published in:

Clinical Epigenetics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13148-021-01100-x

By:

Licht, Jonathan D.;
Bennett, Richard L.

Publication type:

Article

Circadian rhythms in the three-dimensional genome: implications of chromatin interactions for cyclic transcription.

Published in:

Clinical Epigenetics, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13148-019-0677-2

By:

Pacheco-Bernal, Ignacio;
Becerril-Pérez, Fernando;
Aguilar-Arnal, Lorena

Publication type:

Article

Focus on your locus with a massively parallel reporter assay.

Published in:

Journal of Neurodevelopmental Disorders, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s11689-022-09461-x

By:

McAfee, Jessica C.;
Bell, Jessica L.;
Krupa, Oleh;
Matoba, Nana;
Stein, Jason L.;
Won, Hyejung

Publication type:

Article

Rare dosage abnormalities flanking the SHOX gene.

Published in:

Egyptian Journal of Medical Human Genetics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s43042-021-00209-1

By:

Bunyan, David J.;
Gevers, Evelien;
Hobbs, James I.;
Duncan-Flavell, Philippa J.;
Howarth, Rachel J.;
Holder-Espinasse, Muriel;
Klee, Philippe;
Van-Heurk, Roxane;
Lemmens, Laure;
Carminho-Rodrigues, Maria Teresa;
Mohamed, Zainaba;
Goturu, Aruna;
Hughes, Claire R.;
Ajzensztejn, Michal;
Thomas, N. Simon

Publication type:

Article

A polymorphic transcriptional regulatory domain in the amyotrophic lateral sclerosis risk gene CFAP410 correlates with differential isoform expression.

Published in:

Frontiers in Molecular Neuroscience, 2022, v. 15, p. 1, doi. 10.3389/fnmol.2022.954928

By:

Marshall, Jack N. G.;
Fröhlich, Alexander;
Li Li;
Pfaff, Abigail L.;
Middlehurst, Ben;
Spargo, Thomas P.;
Iacoangeli, Alfredo;
Bing Lang;
Al-Chalabi, Ammar;
Koks, Sulev;
Bubb, Vivien J.;
Quinn, John P.

Publication type:

Article

CRISPR/Cas9-mediated genome editing reveals differences in the contribution of INDEHISCENT homologues to pod shatter resistance in Brassica napus L.

Published in:

Theoretical & Applied Genetics, 2019, v. 132, n. 7, p. 2111, doi. 10.1007/s00122-019-03341-0

By:

Zhai, Yungu;
Cai, Shengli;
Hu, Limin;
Yang, Yang;
Amoo, Olalekan;
Fan, Chuchuan;
Zhou, Yongming

Publication type:

Article

Addiction-Associated Genetic Variants Implicate Brain Cell Type- and Region-Specific Cis-Regulatory Elements in Addiction Neurobiology.

Published in:

Journal of Neuroscience, 2021, v. 41, n. 43, p. 9008, doi. 10.1523/JNEUROSCI.2534-20.2021

By:

Srinivasan, Chaitanya;
Phan, BaDoi N.;
Lawler, Alyssa J.;
Ramamurthy, Easwaran;
Kleyman, Michael;
Brown, Ashley R.;
Kaplow, Irene M.;
Wirthlin, Morgan E.;
Pfenning, Andreas R.

Publication type:

Article

Genome-Wide Identification, Expression Analysis under Abiotic Stress and Co-Expression Analysis of MATE Gene Family in Torreya grandis.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 7, p. 3859, doi. 10.3390/ijms25073859

By:

Shen, Hang;
Hou, Ying;
Wang, Xiaorong;
Li, Yaru;
Wu, Jiasheng;
Lou, Heqiang

Publication type:

Article

Genome-Wide Identification of PEBP Gene Family in Two Dendrobium Species and Expression Patterns in Dendrobium chrysotoxum.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 24, p. 17463, doi. 10.3390/ijms242417463

By:

Zhang, Meng-Meng;
Zhao, Xuewei;
He, Xin;
Zheng, Qinyao;
Huang, Ye;
Li, Yuanyuan;
Ke, Shijie;
Liu, Zhong-Jian;
Lan, Siren

Publication type:

Article

Genome-Wide Identification and Expression Analysis of NCED Gene Family in Pear and Its Response to Exogenous Gibberellin and Paclobutrazol.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 8, p. 7566, doi. 10.3390/ijms24087566

By:

Liu, Jinming;
Yuan, Xing;
Quan, Shaowen;
Zhang, Meng;
Kang, Chao;
Guo, Caihua;
Zhang, Zhongrong;
Niu, Jianxin

Publication type:

Article

Genome-Scale Investigation of GARP Family Genes Reveals Their Pivotal Roles in Nutrient Stress Resistance in Allotetraploid Rapeseed.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 22, p. 14484, doi. 10.3390/ijms232214484

By:

Hua, Ying-Peng;
Wu, Peng-Jia;
Zhang, Tian-Yu;
Song, Hai-Li;
Zhang, Yi-Fan;
Chen, Jun-Fan;
Yue, Cai-Peng;
Huang, Jin-Yong;
Sun, Tao;
Zhou, Ting

Publication type:

Article

OsTBP2.1, a TATA-Binding Protein, Alters the Ratio of OsNRT2.3b to OsNRT2.3a and Improves Rice Grain Yield.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 18, p. N.PAG, doi. 10.3390/ijms231810795

By:

Zhang, Yong;
Iqbal, Muhammad Faseeh;
Wang, Yulong;
Qian, Kaiyun;
Xiang, Jinxia;
Xu, Guohua;
Fan, Xiaorong

Publication type:

Article

K-mer Content Changes with Node Degree in Promoter–Enhancer Network of Mouse ES Cells.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 15, p. 8067, doi. 10.3390/ijms22158067

By:

Szyman, Kinga;
Wilczyński, Bartek;
Dąbrowski, Michał

Publication type:

Article

Arabidopsis thaliana Myb59 Gene Is Involved in the Response to Heterodera schachtii Infestation, and Its Overexpression Disturbs Regular Development of Nematode-Induced Syncytia.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 12, p. 6450, doi. 10.3390/ijms22126450

By:

Wiśniewska, Anita;
Wojszko, Kamila;
Różańska, Elżbieta;
Lenarczyk, Klaudia;
Kuczerski, Karol;
Sobczak, Mirosław

Publication type:

Article

A cis -Acting Mutation in the Px ABCG1 Promoter Is Associated with Cry1Ac Resistance in Plutella xylostella (L.).

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 11, p. 6106, doi. 10.3390/ijms22116106

By:

Qin, Jianying;
Ye, Fan;
Xu, Linzheng;
Zhou, Xuguo;
Crickmore, Neil;
Zhou, Xiaomao;
Zhang, Youjun;
Guo, Zhaojiang

Publication type:

Article