Works matching DE "GENE expression profiling"

Results: 5000

KMT2D Regulates Tooth Enamel Development.

Published in:

Journal of Dental Research, 2025, v. 104, n. 8, p. 920, doi. 10.1177/00220345251320922

By:

Lee, J.-M.;
Jung, H.;
Tang, Q.;
Li, L.;
Lee, S.-K.;
Lee, J.W.;
Park, Y.;
Kwon, H.-J.E.

Publication type:

Article

Characterization of large transgene integrations in Chinese hamster ovary cells using a bioengineered mammalian transposase.

Published in:

Biotechnology Progress, 2025, v. 41, n. 3, p. 1, doi. 10.1002/btpr.3524

By:

Marx, Nicolas;
Otte, Anna‐Maria;
Leitner, Klaus;
Sitepu, Rehmadanta;
Berger, Thomas;
Schäpertöns, Veronika;
Huber, Christian G.;
Zhu, Quan;
Nema, Sandeep;
Higgins, Joseph J.;
Borth, Nicole

Publication type:

Article

RIDDEN: Data-driven inference of receptor activity from transcriptomic data.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 6, p. 1, doi. 10.1371/journal.pcbi.1013188

By:

Barsi, Szilvia;
Varga, Eszter;
Dimitrov, Daniel;
Saez-Rodriguez, Julio;
Hunyady, László;
Szalai, Bence

Publication type:

Article

Drug repositioning for pan-cancers of the digestive system: Identification of amonafide and BX795 as potential therapeutics via integrative Omics analysis.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0325700

By:

Liu, Weidong;
Gao, Jiaying;
Ren, Shuqiang;
Nashun, Buhe;
Gao, Fei

Publication type:

Article

From inserts to chips: microfluidic culture and 3D astrocyte co-culture drive functional and transcriptomic changes in hiPSC-derived endothelial cells.

Published in:

Fluids & Barriers of the CNS, 2025, v. 22, n. 1, p. 1, doi. 10.1186/s12987-025-00672-7

By:

Sonninen, Tuuli-Maria;
Peltonen, Sanni;
Kälvälä, Sara;
Nguyen, Hoang-Tuan;
Ruponen, Marika;
Singh, Prateek;
Lehtonen, Šárka

Publication type:

Article

Elucidating the complexity of radiation-induced brain injury: comprehensive assessment of hippocampal and cortical impacts.

Published in:

Journal of Neuro-Oncology, 2025, v. 173, n. 3, p. 571, doi. 10.1007/s11060-025-05018-9

By:

Chen, Beibei;
Wang, Yao;
Dang, Ruili;
Zhao, ShiYuan;
Wei, Shanshan;
Li, Jialu;
Meng, Xiangjiao;
Rong, Rong;
Jiang, Pei

Publication type:

Article

Exosomal LncRNA and CircRNA Regulate Peripheral Blood Mononuclear Cell Function through a Competitive Endogenous RNA Mechanism in Allergic Rhinitis.

Published in:

International Archives of Allergy & Immunology, 2025, v. 186, n. 6, p. 509, doi. 10.1159/000542695

By:

Mao, Guangyao;
Zhu, Qian;
Zeng, Yiyun;
Cong, LiQiang;
Ye, Jun;
Kong, Xuhui

Publication type:

Article

MTHFD2 对脑胶质母细胞瘤细胞生长和转移的作用和机制研究.

Published in:

Journal of Clinical Neurosurgery / Linchuang Shenjingwaike Zazhi, 2025, v. 22, n. 2, p. 166, doi. 10.3969/j.issn.1672-7770.2025.02.008

By:

张亮;
李菲;
张凌雪;
蒋小兵;
赵海康

Publication type:

Article

Prognostic Value of SERPINA1 as a Biomarker for Poor Survival of Gliomas.

Published in:

Journal of Medical Sciences (1011-4564), 2025, v. 45, n. 3, p. 77, doi. 10.4103/jmedsci.jmedsci_184_24

By:

Cheng, Nai-Jui;
Hung, Hao-Yuan;
Chung, Tzu-Tsao;
Song, Wen-Shin;
Hong, Kun-Ting;
Hueng, Dueng-Yuan

Publication type:

Article

Towards the Regulatory Network of Methanotrophs Based on Available Gene Expression Profiles.

Published in:

Microbiology (00262617), 2025, v. 94, n. 3, p. 415, doi. 10.1134/S0026261724610571

By:

Sokolova, T. S.;
Kolmykov, S. K.;
Kulyashov, M. A.;
Khlebodarova, T. M.;
Kalyuzhnaya, M. G.;
Akberdin, I. R.

Publication type:

Article

Integrative analysis of 115 transcriptomic studies decodes the molecular landscape of neurodevelopmental disorders.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08330-2

By:

Koetsier, Jarno;
Eijssen, Lars M. T.;
Schurgers, Leon J.;
Curfs, Leopold M. G.;
Reutelingsperger, Chris P.;
Bahram Sangani, Nasim

Publication type:

Article

Biological Network Analysis of Genes and Non-coding RNAs in Polycystic Ovary Syndrome.

Published in:

Cyprus Journal of Medical Sciences, 2025, v. 10, p. 1, doi. 10.4274/cjms.2025.2024-131

By:

Hasanzadeh, Bita Ostad;
Hasanzadeh, Parham Ostad;
Tulay, Pınar

Publication type:

Article

The impact of SRRM2-AS1 in ovarian cancer: a comprehensive analysis based on pan-cancer and in vitro validation.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02933-1

By:

Lu, Jiaojiao;
Zheng, Xia;
Li, Xu

Publication type:

Article

Machine Learning Developed a T Cell Exhaustion Transcription Factor Signature for Predicting Clinical Outcomes and Immunotherapy Response in Skin Cutaneous Melanoma.

Published in:

European Journal of Cancer Care, 2025, v. 2025, p. 1, doi. 10.1155/ecc/5062083

By:

Sun, Zhaosheng;
Wu, Yanyun;
Tong, Jie;
Maulik Kariya, Khyati

Publication type:

Article

Palatal segment contributions to midfacial anterior–posterior growth.

Published in:

Journal of Anatomy, 2025, v. 247, n. 1, p. 52, doi. 10.1111/joa.14222

By:

Welsh, Ian C.;
Feiler, Maria E.;
Lipman, Danika;
Mormile, Isabel;
Hansen, Karissa;
Percival, Christopher J.

Publication type:

Article

Linalool-based silver nanoconjugates as potential therapeutics for glioblastoma: in silico and in vitro insights.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0325281

By:

Manzoor, Hina;
Khan, Muhammad Umer;
Khan, Samiullah;
Shah, Mohibullah;
Shabbir, Chaudhry Ahmed;
Alkhtani, Hamad M.

Publication type:

Article

Exploring the role of neutrophils in inflammatory pain hypersensitivity via single-cell transcriptome profiling.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1552993

By:

Ding, Kai;
Liu, Xing;
Zeng, Bin;
Liu, Songyu;
Zhang, Lu;
Li, Bo;
Zhou, Jinyi;
Su, Xiaosan;
Wang, Jun

Publication type:

Article

Comparison of Cytopathology Yield of Fine-Needle Aspiration Biopsy Using 25G Versus 27G Needles for Melanocytic Uveal Tumors †.

Published in:

Journal of Clinical Medicine, 2025, v. 14, n. 11, p. 3650, doi. 10.3390/jcm14113650

By:

Gameiro, Gustavo Rosa;
Valente, Carolina C.;
Augsburger, James J.;
Correa, Zelia M.

Publication type:

Article

Genomic and Biomarker Innovations in Predicting Kidney Transplant Rejection.

Published in:

Journal of Clinical Medicine, 2025, v. 14, n. 11, p. 3642, doi. 10.3390/jcm14113642

By:

Punukollu, Rachana;
Parajuli, Sandesh;
Chaudhari, Harshad;
Mour, Girish

Publication type:

Article

NF2 loss-of-function and hypoxia drive radiation resistance in grade 2 meningiomas Open Access.

Published in:

JNCI: Journal of the National Cancer Institute, 2025, v. 117, n. 6, p. 1175, doi. 10.1093/jnci/djaf022

By:

Patel, Bhuvic;
Pugazenthi, Sangami;
English, Collin W;
Nitturi, Vijay;
Pari, Shree S;
Mahlokozera, Tatenda;
Leidig, William A;
Lu, Hsiang-Chih;
Yang, Alicia;
Roberts, Kaleigh;
DeSouza, Patrick;
McGeehan, Kyle P;
Mao, Diane D;
Sinha, Namita;
Ippolito, Joseph E;
Dahiya, Sonika;
Petti, Allegra;
Yano, Hiroko;
Klisch, Tiemo J;
Harmanci, Akdes S

Publication type:

Article

Tissue degrading and remodelling molecules in giant cell arteritis Open Access.

Published in:

Rheumatology, 2025, v. 64, n. 5, p. 3095, doi. 10.1093/rheumatology/keae710

By:

Watanabe, Nobumasa;
Hara, Yuichiro;
Nishito, Yasumasa;
Kounoe, Mai;
Sekiyama, Kazunari;
Takamasu, Eisuke;
Kise, Takayasu;
Chinen, Naofumi;
Shimada, Kota;
Sugihara, Makoto;
Kawaji, Hideya

Publication type:

Article

Synovial transcriptome-wide association study implicates novel genes underlying rheumatoid arthritis risk.

Published in:

Rheumatology, 2025, v. 64, n. 5, p. 2515, doi. 10.1093/rheumatology/keae654

By:

Hu, Shou-Ye;
Jiang, Feng;
Song, Hui-Miao;
Wang, Ya-Kang;
Tian, Wen;
Wu, Hao;
Yao, Shi;
He, Chang-Yi;
Gao, Hui-Wu;
Yang, Tie-Lin;
Yang, Zhi;
Guo, Yan

Publication type:

Article

Type I interferon biomarker in idiopathic inflammatory myopathies: associations of Siglec-1 with disease activity and treatment response Open Access.

Published in:

Rheumatology, 2025, v. 64, n. 5, p. 2979, doi. 10.1093/rheumatology/keae630

By:

Kamperman, Renske G;
Veldkamp, Saskia R;
Evers, Sanne W;
Lim, Johan;
Schaik, Ivo van;
Royen-Kerkhof, Annet van;
Wijk, Femke van;
Kooi, Anneke J van der;
Jansen, Marc;
Raaphorst, Joost

Publication type:

Article

RNA sequencing uncovers key players of cartilage calcification: potential implications for osteoarthritis pathogenesis Open Access.

Published in:

Rheumatology, 2025, v. 64, n. 5, p. 3151, doi. 10.1093/rheumatology/keae587

By:

Bernabei, Ilaria;
Faure, Elodie;
Wegrzyn, Julien;
Bertheaume, Nicolas;
Falgayrac, Guillaume;
Hugle, Thomas;
Nasi, Sonia;
Busso, Nathalie

Publication type:

Article

The role and mechanism of CRISPLD2 in skin fibrosis of systemic sclerosis.

Published in:

Rheumatology, 2025, v. 64, n. 5, p. 3134, doi. 10.1093/rheumatology/keae541

By:

Ding, Liqing;
Bao, Ding;
Dai, Bingying;
Meng, Qiming;
Lv, Chunliu;
Luo, Hui;
Zhu, Honglin

Publication type:

Article

Exploring genetic and immune cell dynamics in systemic lupus erythematosus patients with Epstein–Barr virus infection via machine learning.

Published in:

Rheumatology, 2025, v. 64, n. 5, p. 2656, doi. 10.1093/rheumatology/keae537

By:

Gui, Jiajun;
Fang, Mengyuan;
Tu, Jianxin;
Chen, Xiaowei;
Sun, Li

Publication type:

Article

Genome-Wide Analysis of the Polygalacturonase Gene Family in Macadamia and Identification of Members Involved in Fruit Abscission.

Published in:

Plants (2223-7747), 2025, v. 14, n. 11, p. 1610, doi. 10.3390/plants14111610

By:

Fei, Yu-Chong;
Mo, Yi;
Xu, Jiajing;
Lin, Kai;
Tao, Liang;
He, Xiyong;
Li, Meng;
Xu, Zeng-Fu

Publication type:

Article

Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08335-x

By:

Akaiwa, Takanori;
Oda, Hiroki;
Akiyama-Oda, Yasuko

Publication type:

Article

Interleukin-4 and -13 Gene Expression Profiles in Immune-Related Bullous Pemphigoid Indicate Efficacy of IL-4/IL-13 Inhibitors.

Published in:

Cancers, 2025, v. 17, n. 11, p. 1845, doi. 10.3390/cancers17111845

By:

Arnold, Lisa;
Morak, Monika;
Kramer, Nora;
Berking, Carola;
Schefzyk, Matthias;
Hassel, Jessica C.;
Ziemer, Mirjana;
French, Lars E.;
Gutzmer, Ralf;
Nashan, Dorothee;
Heinzerling, Lucie

Publication type:

Article

RNA Sequencing Identifies WT1 Overexpression as a Predictor of Poor Outcomes in Acute Myeloid Leukemia.

Published in:

Cancers, 2025, v. 17, n. 11, p. 1818, doi. 10.3390/cancers17111818

By:

Goel, Harsh;
Pandey, Avanish Kumar;
Kumar, Rahul;
Kumar, Rakesh;
Ningombam, Somorjit Singh;
Naz, Farhat;
Makkar, Harshita;
Singh, Jay;
Ali, Shadab;
Chopra, Anita;
Ranjan, Amar;
Gupta, Aditya Kumar;
Meena, Jagdish Prasad;
Viswanathan, Ganesh Kumar;
Bakhshi, Sameer;
Sahoo, Ranjit Kumar;
Batra, Atul;
Rath, Goura Kishor;
Hussain, Showket;
Jha, Abhimanyu Kumar

Publication type:

Article

Modeling the Transitional Phase of Epithelial Cells Reveals Prognostic and Therapeutic Targets in Pancreatic Ductal Adenocarcinoma.

Published in:

Cancers, 2025, v. 17, n. 11, p. 1813, doi. 10.3390/cancers17111813

By:

Ye, Linhan;
Chen, Zongyao;
Zhang, Jingcheng;
Li, Qiaolin

Publication type:

Article

Identification of an Immune-Related Gene Signature for Prognostic Prediction in Glioblastoma: Insights from Integrated Bulk and Single-Cell RNA Sequencing.

Published in:

Cancers, 2025, v. 17, n. 11, p. 1799, doi. 10.3390/cancers17111799

By:

Chen, Jianan;
Wu, Qiong;
Berglund, Anders E.;
Macaulay, Robert J.;
Mulé, James J.;
Etame, Arnold B.

Publication type:

Article

Lactate Is a Major Promotor of Breast Cancer Cell Aggressiveness.

Published in:

Cancers, 2025, v. 17, n. 11, p. 1793, doi. 10.3390/cancers17111793

By:

Khajah, Maitham A.;
Khushaish, Sarah;
Luqmani, Yunus

Publication type:

Article

Low TAS1R2 Sweet Taste Receptor Expression in Skeletal Muscle of Genetically Diverse BXD Mice Mirrors Transcriptomic Signatures of Loss-of-Function Mice.

Published in:

Nutrients, 2025, v. 17, n. 11, p. 1918, doi. 10.3390/nu17111918

By:

King, Kendall;
Serrano, Joan;
Meshram, Nishita N.;
Saadi, Mahdiye;
Moreira, Lynn;
Papachristou, Evaggelia G.;
Kyriazis, George A.

Publication type:

Article

Effect of Alpha-1 Antitrypsin Deficiency on Zinc Homeostasis Gene Regulation and Interaction with Endoplasmic Reticulum Stress Response-Associated Genes.

Published in:

Nutrients, 2025, v. 17, n. 11, p. 1913, doi. 10.3390/nu17111913

By:

Liuzzi, Juan P.;
Gonzales, Samantha;
Barbieri, Manuel A.;
Vidal, Rebecca;
Yoo, Changwon

Publication type:

Article

Dihydromyricetin May Attenuate Skin Aging as a RAGE Inhibitor.

Published in:

Nutrients, 2025, v. 17, n. 11, p. 1862, doi. 10.3390/nu17111862

By:

Wang, Fei;
Jian, Yuanzhi;
Xia, Fangzhi;
Kuo, Liangchun;
Wang, Junbo

Publication type:

Article

Tacrolimus Modulates TGF-β Signaling–Related Genes and MicroRNAs in Human Retinal Pigment Epithelial Cells Activated by Lipopolysaccharide.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5402, doi. 10.3390/ijms26115402

By:

Kiełbasińska, Aleksandra;
Krysik, Katarzyna;
Janiszewska-Bil, Dominika;
Machaj, Martyna;
Lelek, Zuzanna;
Sułkowska, Joanna;
Nawotny-Czupryna, Olga;
Grabarek, Beniamin Oskar

Publication type:

Article

Transcriptome and Co-Expression Network Analyses of Resistant and Susceptible Rice Cultivars in Response to Meloidogyne graminicola.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5315, doi. 10.3390/ijms26115315

By:

Zhang, Shirui;
Xiao, Zitong;
Shen, Kexiang;
Lai, Wentao;
Du, Shunbiao;
Zhou, Linyan;
Chen, Jiansong

Publication type:

Article

Deciphering the Overlapping Immune Mechanism Between Depression and Breast Cancer.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5229, doi. 10.3390/ijms26115229

By:

Ma, Yiming;
Ming, Yu;
Hou, Zhiyong;
Yu, Yanan;
Liu, Jun;
Wang, Zhong

Publication type:

Article

Roseburia intestinalis Modulates Immune Responses by Inducing M1 Macrophage Polarization.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5049, doi. 10.3390/ijms26115049

By:

Bircher, Anna;
Katkeviciute, Egle;
Morsy, Yasser;
Lang, Silvia;
Montalban-Arques, Ana;
Scharl, Michael

Publication type:

Article

A Five-Gene Signature for the Prediction of Event-Free Survival of Both Pediatric and Adult Acute Myeloid Leukemia.

Published in:

Diagnostics (2075-4418), 2025, v. 15, n. 11, p. 1421, doi. 10.3390/diagnostics15111421

By:

Chen, Dechang;
Liu, Alvin J.;
Sheng, Li;
Liu, Zhenqiu;
Elcheva, Irina

Publication type:

Article

Elevated Mutation Burdens in Canadian Oat and Wheat Cultivars Released over the Past Century.

Published in:

Cells (2073-4409), 2025, v. 14, n. 11, p. 844, doi. 10.3390/cells14110844

By:

Fu, Yong-Bi;
Horbach, Carolee

Publication type:

Article

Identification of a novel anoikis-related gene signature to predict prognosis and tumor microenvironment in intrahepatic cholangiocarcinoma carcinoma.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02840-5

By:

Zhou, Xuan;
Wei, Bai;
Wang, Yan;
Liu, Mingjie;
Guo, Xiangru;
Duan, Yuting

Publication type:

Article

Predicting atezolizumab response in metastatic urothelial carcinoma patients using machine learning on integrated tumour gene expression and clinical data.

Published in:

NPJ Precision Oncology, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41698-025-00969-8

By:

Piyawajanusorn, Chayanit;
Ghislat, Ghita;
Ballester, Pedro J.

Publication type:

Article

Extracellular matrix modulating effects of amnion‐derived mesenchymal stem cells on aging skin wounds in α‐Klotho knockout mice.

Published in:

Geriatrics & Gerontology International, 2025, v. 25, n. 5, p. 701, doi. 10.1111/ggi.70043

By:

Sasaki, Yuki;
Ohnishi, Shunsuke;
Takahashi, Hiroko;
Ishikawa, Kosuke;
Miura, Takahiro;
Funayama, Emi;
Okubo, Naoto;
Yamamoto, Yuhei;
Maeda, Taku

Publication type:

Article

Role of the SPI1/CDKN2A/p53 signaling pathway in cuproptosis of lung adenocarcinoma cells.

Published in:

Oncology Letters, 2025, v. 30, n. 1, p. N.PAG, doi. 10.3892/ol.2025.15099

By:

An, Jiayue;
Song, Wei;
Wang, Qin;
Tan, Boyu;
Fei, Xuan;
Wang, Ruoxi;
Li, Siyan;
Lu, Xiyu;
Li, Youjie;
Xie, Ning

Publication type:

Article

Modified pea apyrase has altered nuclear functions and enhances the growth of yeast and Arabidopsis.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1584871

By:

Tripathy, Manas K.;
Wang, Huan;
Slocum, Robert D.;
Jiang, Han-Wei;
Nam, Ji-Chul;
Sabharwal, Tanya;
Veerappa, Roopadarshini;
Brown, Katherine A.;
Cai, Xingbo;
Faull, Peter Allen;
Clark, Greg;
Roux, Stanley J.

Publication type:

Article

Comments on the paper "Extensive epigenomic dysregulation is a hallmark of homologous recombination deficiency in triple‐negative breast cancer" by Y. Chen et al.

Published in:

International Journal of Cancer, 2025, v. 157, n. 3, p. 588, doi. 10.1002/ijc.35433

By:

Lønning, Per Eystein;
Nikolaienko, Oleksii;
Knappskog, Stian

Publication type:

Article

Electroacupuncture ameliorates cartilage damage in a rat model of knee osteoarthritis and regulates expression of miRNAs and the TLR4/NF-κB pathway.

Published in:

Acupuncture in Medicine, 2025, v. 43, n. 3, p. 164, doi. 10.1177/09645284251342259

By:

Wang, Zhenzhen;
Zheng, Xiahai;
Lin, Jing;
Zhou, Bin;
Zeng, Zhenming;
Gao, Haiwei;
Chen, Haoxiong;
Tang, Chunzhi

Publication type:

Article

Screening and validation of 3'-Methoxydaidzein as a therapeutic agent in ulcerative colitis based on disulfidptosis-associated molecular clusters.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0324586

By:

Yuan, Jie;
Gao, Chongyong;
Xin, Wang;
Meng, Fanlin;
Zhang, Hong

Publication type:

Article