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B cell class switch recombination is regulated by DYRK1A through MSH6 phosphorylation.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37205-5
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- Article
Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals.
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- PLoS Genetics, 2019, v. 15, n. 6, p. 1, doi. 10.1371/journal.pgen.1008181
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- Article
A BALB/c IGHV Reference Set, Defined by Haplotype Analysis of Long-Read VDJ-C Sequences From F1 (BALB/c x C57BL/6) Mice.
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- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.888555
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- Article
Quantification of read species behavior within whole genome sequencing of cancer genomes for the stratification and visualization of genomic variation.
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- Nucleic Acids Research, 2016, v. 44, n. 9, p. 1, doi. 10.1093/nar/gkw031
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- Article
Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations.
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- Nucleic Acids Research, 2013, v. 41, n. 18, p. e170, doi. 10.1093/nar/gkt660
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- Article
Quantifying selection in high-throughput Immunoglobulin sequencing data sets.
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- Nucleic Acids Research, 2012, v. 40, n. 17, p. e134, doi. 10.1093/nar/gks457
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- Article
Detecting selection in immunoglobulin sequences.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W499, doi. 10.1093/nar/gkr413
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- Article
T cell receptor beta germline variability is revealed by inference from repertoire data.
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- Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-021-01008-4
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- Article
Slicing and Dicing the Genome: A Statistical Physics Approach to Population Genetics.
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- Journal of Statistical Physics, 2011, v. 142, n. 6, p. 1302, doi. 10.1007/s10955-010-0113-7
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- Article
Digger: directed annotation of immunoglobulin and T cell receptor V, D, and J gene sequences and assemblies.
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- Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae144
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- Article
A novel approach to T-cell receptor beta chain (TCRB) repertoire encoding using lossless string compression.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad426
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- Article
simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods.
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- GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad074
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- Article
Evidence for Sequential Performance Effects in Professional Darts.
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- Frontiers in Psychology, 2018, p. 1, doi. 10.3389/fpsyg.2018.00591
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- Article
Identification of Subject-Specific Immunoglobulin Alleles From Expressed Repertoire Sequencing Data.
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- Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00129
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- Article
"Hot Hand" on Strike: Bowling Data Indicates Correlation to Recent Past Results, Not Causality.
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- PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0030112
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- Article
The Hot (Invisible?) Hand: Can Time Sequence Patterns of Success/Failure in Sports Be Modeled as Repeated Random Independent Trials?
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- PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0024532
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- Article
Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming.
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- Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00435
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- Article
Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08489-3
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- Article
AIRR-C IG Reference Sets: curated sets of immunoglobulin heavy and light chain germline genes.
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- Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2023.1330153
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- Publication type:
- Article
Altered somatic hypermutation patterns in COVID-19 patients classifies disease severity.
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- Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1031914
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- Article
Consistent scaling of persistence time in metapopulations.
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- Ecology, 2012, v. 93, n. 5, p. 1214, doi. 10.1890/11-1077.1
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- Article
The immune cell infiltrate populating meningiomas is composed of mature, antigen-experienced T and B cells.
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- Neuro-Oncology, 2013, v. 15, n. 11, p. 1479, doi. 10.1093/neuonc/not110
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- Article
Optimizing Metapopulation Sustainability through a Checkerboard Strategy.
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- PLoS Computational Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000643
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- Article
Cross-reactive antibodies against human coronaviruses and the animal coronavirome suggest diagnostics for future zoonotic spillovers.
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- Science Immunology, 2021, v. 6, n. 61, p. 1, doi. 10.1126/sciimmunol.abe9950
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- Article
Guidelines for reproducible analysis of adaptive immune receptor repertoire sequencing data.
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- Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae221
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- Article
Immune2vec: Embedding B/T Cell Receptor Sequences in ℝ <sup>N</sup> Using Natural Language Processing.
- Published in:
- Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.680687
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- Article
Machine Learning Analysis of Naïve B-Cell Receptor Repertoires Stratifies Celiac Disease Patients and Controls.
- Published in:
- Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.627813
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- Article
The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies.
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- PLoS Pathogens, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.ppat.1003754
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- Article
Breast cancer is marked by specific, Public T-cell receptor CDR3 regions shared by mice and humans.
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- PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008486
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- Article
B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes.
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- Science Translational Medicine, 2014, v. 6, n. 248, p. 1, doi. 10.1126/scitranslmed.3008879
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- Article
Gambling Strategies and Prize-Pricing Recommendation in Sports Multi-Bets.
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- Big Data & Cognitive Computing, 2021, v. 5, n. 4, p. 1, doi. 10.3390/bdcc5040070
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- Article
Species survival emerge from rare events of individual migration.
- Published in:
- Scientific Reports, 2015, p. 7877, doi. 10.1038/srep07877
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- Article
IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data.
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- Nucleic Acids Research, 2023, v. 51, n. 16, p. e86, doi. 10.1093/nar/gkad603
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- Article
Polymorphisms in human immunoglobulin heavy chain variable genes and their upstream regions.
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- Nucleic Acids Research, 2020, v. 48, n. 10, p. 5499, doi. 10.1093/nar/gkaa310
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- Article
VDJbase: an adaptive immune receptor genotype and haplotype database.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D1051, doi. 10.1093/nar/gkz872
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- Article
OGRDB: a reference database of inferred immune receptor genes.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D964, doi. 10.1093/nar/gkz822
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- Article
nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.
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- PLoS Computational Biology, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.pcbi.1012265
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- Article
Practical guidelines for B-cell receptor repertoire sequencing analysis.
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- Genome Medicine, 2015, v. 7, p. 1, doi. 10.1186/s13073-015-0243-2
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- Publication type:
- Article
Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE).
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- PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006899
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- Article
RAbHIT: R Antibody Haplotype Inference Tool.
- Published in:
- Bioinformatics, 2019, v. 35, n. 22, p. 4840, doi. 10.1093/bioinformatics/btz481
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- Article
Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data.
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- Bioinformatics, 2015, v. 31, n. 20, p. 3356, doi. 10.1093/bioinformatics/btv359
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- Publication type:
- Article
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.
- Published in:
- Bioinformatics, 2014, v. 30, n. 13, p. 1930, doi. 10.1093/bioinformatics/btu138
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- Publication type:
- Article
Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data.
- Published in:
- Frontiers in Immunology, 2013, v. 4, p. 1, doi. 10.3389/fimmu.2013.00358
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- Publication type:
- Article